© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|02401 |
| Gene name | |
| Location | scaffold_02:3603539..3606969 |
| Strand | + |
| Gene length (bp) | 3430 |
| Transcript length (bp) | 2178 |
| Coding sequence length (bp) | 2178 |
| Protein length (aa) | 726 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01565 | FAD_binding_4 | FAD binding domain | 3.6E-22 | 86 | 219 |
| PF01375 | Enterotoxin_a | Heat-labile enterotoxin alpha chain | 1.6E-08 | 529 | 658 |
| PF08031 | BBE | Berberine and berberine like | 3.1E-06 | 467 | 511 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005615 | extracellular space | Yes |
| GO:0090729 | toxin activity | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0000166 | nucleotide binding | No |
| GO:0005575 | cellular_component | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003824 | catalytic activity | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0036094 | small molecule binding | No |
| GO:0005488 | binding | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0097159 | organic cyclic compound binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1318 | 0.0324 | 0.9419 | 0.1161 | 0.0486 | 0.017 | 0.3158 | 0.3423 | 0.1914 | 0.004 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 21 | 0.999657 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| CAZyme category | E-value | Start | End |
|---|---|---|---|
| AA7 | 1.2E-55 | 73 | 508 |
| Orthofinder run ID | 4 |
| Orthogroup | 322 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02401 MNHMARIAALSLALLGTLVAAAPFNASTVPRYFQPSPYTRRGLSVVQVQYELGAVVSNGTAIFGPRSSAWANATE RWNTFDVPHIEIVVEVKTEADVSKVVKYCNDNSIEFLAYTRGHGFTSTLTKFRGIEINLSQLKAIKIQPDGKSAW FQGGTYGKLVIDTLWDRGYVTTTGSSGCVGLMGPGLGGGFGRYQGQYGLVSDNFVNLNVVLADGSTVTVNETSHS DLFWAMRGAGHNFGIVTSAELKIYPRKIDTWHYHNYVWDQDKLEAVFEALNKFQGKGEIPPLMGANFGQFSVEPA TNQTKAVISWTFAYAGPAQEAEALLKPFNDIKAILSTSGDVPYPQLMALQGTGIDSPSCASNPYIGGTANLQVYN VTAERQIMNVLNEKTAQHPQLAAGARVFHEGYASKRTQEIDRRSTAYAHRDDYLVVFFAAVASPGLEKIARELTQ EVRSFWYGGQPGRLPTAYVNHAAGGETVESLYGYEPWRLERLRQLKAKYDPKNHFRFYNPIVKGLEAHHLEEPGK NGFRSVYTSTSKSFGITLRFATVRPNNDRVDGWVYKIKATPNMIDMNESGVKNHFIQEHEFSAMGGIRWDQIEAW LPVPRQSVGAHDASLLCRKFNENADFPKSWIANIEYNEKYNQFTASGGQPQLSGTAENVNKYTKSLEEYGLEFMK KNGEAVGWDPKKFPFLELKVPEGEWKGPHELDALLPAFNLPANDEPVCKN* |
| Coding | >Ophcf2|02401 ATGAATCACATGGCTCGGATTGCGGCTCTCTCGCTCGCTTTACTCGGAACATTGGTTGCTGCGGCCCCTTTCAAC GCTTCCACCGTCCCTCGTTATTTCCAACCTTCCCCTTACACGCGTCGAGGCCTCTCAGTTGTTCAGGTGCAGTAC GAGTTGGGGGCAGTAGTATCGAATGGAACAGCCATCTTCGGGCCTCGAAGCTCGGCGTGGGCTAATGCAACGGAG AGATGGAATACGTTTGATGTGCCTCACATCGAGATCGTTGTGGAGGTCAAGACGGAGGCAGACGTGTCCAAGGTG GTCAAGTACTGCAACGACAACAGCATCGAGTTCTTGGCCTACACCCGAGGTCACGGCTTCACCTCGACGTTGACC AAGTTTAGGGGCATCGAAATCAACCTCTCTCAACTAAAAGCCATCAAGATCCAGCCCGACGGAAAGTCGGCTTGG TTCCAAGGAGGGACGTATGGAAAACTGGTCATTGATACACTCTGGGATCGCGGCTACGTCACAACCACCGGAAGC AGCGGCTGCGTCGGCCTCATGGGGCCCGGTCTAGGCGGAGGCTTCGGACGTTACCAAGGACAATACGGTCTCGTG AGCGACAACTTTGTCAACTTGAACGTCGTCCTCGCCGATGGCTCAACGGTGACGGTCAACGAAACCAGCCATTCC GATCTCTTCTGGGCCATGAGGGGAGCCGGTCACAACTTCGGCATCGTGACCAGCGCGGAGCTCAAGATCTATCCT CGCAAGATAGACACTTGGCATTACCACAATTATGTCTGGGATCAGGACAAGCTGGAAGCCGTTTTCGAGGCTTTG AACAAGTTTCAGGGCAAGGGGGAGATTCCGCCGTTGATGGGCGCCAACTTTGGCCAGTTCTCGGTCGAGCCTGCT ACTAACCAGACCAAAGCCGTCATCAGCTGGACATTTGCGTATGCGGGTCCCGCCCAGGAGGCAGAGGCTTTACTG AAGCCCTTTAATGACATCAAGGCCATCTTGAGTACTAGCGGAGACGTTCCCTATCCCCAGCTCATGGCTCTTCAG GGAACCGGCATCGATAGCCCATCCTGCGCCTCAAACCCATACATTGGCGGCACGGCCAACCTGCAGGTCTACAAC GTCACCGCCGAGCGCCAGATCATGAATGTCTTGAACGAGAAGACAGCTCAGCATCCACAGCTCGCGGCCGGAGCT CGAGTTTTTCACGAGGGGTACGCCAGTAAGAGGACTCAGGAGATTGACCGGCGGTCGACGGCCTATGCTCATCGT GACGATTACCTCGTTGTTTTCTTCGCCGCCGTGGCGTCTCCGGGACTGGAGAAGATTGCCCGGGAGTTGACTCAG GAGGTTCGGAGTTTCTGGTACGGTGGTCAGCCAGGACGACTTCCAACGGCCTACGTCAACCACGCTGCCGGTGGA GAGACAGTCGAGTCTCTGTACGGCTACGAGCCTTGGCGCTTGGAGCGGCTACGACAGCTCAAGGCCAAGTACGAT CCCAAGAACCATTTCCGTTTCTATAATCCAATCGTCAAAGGTCTGGAAGCGCACCATCTTGAAGAGCCAGGCAAG AATGGATTCAGATCTGTTTACACTTCGACCTCGAAGAGTTTTGGAATCACGCTCAGGTTCGCCACAGTAAGGCCA AATAACGACCGGGTCGACGGCTGGGTTTACAAGATCAAAGCCACGCCAAACATGATTGATATGAATGAATCAGGC GTCAAGAACCACTTCATTCAGGAGCATGAATTCTCGGCGATGGGAGGGATACGCTGGGACCAGATCGAGGCATGG CTACCCGTTCCTCGCCAGTCGGTCGGCGCCCACGATGCGTCATTGCTCTGTCGGAAATTCAACGAAAACGCGGAT TTCCCCAAGTCTTGGATCGCCAACATCGAGTACAACGAAAAGTACAACCAATTCACGGCCAGTGGCGGACAGCCT CAGCTTTCGGGCACTGCGGAAAACGTCAACAAGTACACCAAGTCGCTCGAGGAGTACGGTCTCGAATTCATGAAG AAGAACGGCGAGGCCGTCGGCTGGGATCCGAAGAAGTTTCCGTTTCTGGAACTCAAGGTCCCAGAAGGCGAGTGG AAGGGGCCTCATGAATTGGACGCATTGCTACCTGCATTTAACCTACCGGCGAATGATGAGCCAGTTTGCAAAAAT TGA |
| Transcript | >Ophcf2|02401 ATGAATCACATGGCTCGGATTGCGGCTCTCTCGCTCGCTTTACTCGGAACATTGGTTGCTGCGGCCCCTTTCAAC GCTTCCACCGTCCCTCGTTATTTCCAACCTTCCCCTTACACGCGTCGAGGCCTCTCAGTTGTTCAGGTGCAGTAC GAGTTGGGGGCAGTAGTATCGAATGGAACAGCCATCTTCGGGCCTCGAAGCTCGGCGTGGGCTAATGCAACGGAG AGATGGAATACGTTTGATGTGCCTCACATCGAGATCGTTGTGGAGGTCAAGACGGAGGCAGACGTGTCCAAGGTG GTCAAGTACTGCAACGACAACAGCATCGAGTTCTTGGCCTACACCCGAGGTCACGGCTTCACCTCGACGTTGACC AAGTTTAGGGGCATCGAAATCAACCTCTCTCAACTAAAAGCCATCAAGATCCAGCCCGACGGAAAGTCGGCTTGG TTCCAAGGAGGGACGTATGGAAAACTGGTCATTGATACACTCTGGGATCGCGGCTACGTCACAACCACCGGAAGC AGCGGCTGCGTCGGCCTCATGGGGCCCGGTCTAGGCGGAGGCTTCGGACGTTACCAAGGACAATACGGTCTCGTG AGCGACAACTTTGTCAACTTGAACGTCGTCCTCGCCGATGGCTCAACGGTGACGGTCAACGAAACCAGCCATTCC GATCTCTTCTGGGCCATGAGGGGAGCCGGTCACAACTTCGGCATCGTGACCAGCGCGGAGCTCAAGATCTATCCT CGCAAGATAGACACTTGGCATTACCACAATTATGTCTGGGATCAGGACAAGCTGGAAGCCGTTTTCGAGGCTTTG AACAAGTTTCAGGGCAAGGGGGAGATTCCGCCGTTGATGGGCGCCAACTTTGGCCAGTTCTCGGTCGAGCCTGCT ACTAACCAGACCAAAGCCGTCATCAGCTGGACATTTGCGTATGCGGGTCCCGCCCAGGAGGCAGAGGCTTTACTG AAGCCCTTTAATGACATCAAGGCCATCTTGAGTACTAGCGGAGACGTTCCCTATCCCCAGCTCATGGCTCTTCAG GGAACCGGCATCGATAGCCCATCCTGCGCCTCAAACCCATACATTGGCGGCACGGCCAACCTGCAGGTCTACAAC GTCACCGCCGAGCGCCAGATCATGAATGTCTTGAACGAGAAGACAGCTCAGCATCCACAGCTCGCGGCCGGAGCT CGAGTTTTTCACGAGGGGTACGCCAGTAAGAGGACTCAGGAGATTGACCGGCGGTCGACGGCCTATGCTCATCGT GACGATTACCTCGTTGTTTTCTTCGCCGCCGTGGCGTCTCCGGGACTGGAGAAGATTGCCCGGGAGTTGACTCAG GAGGTTCGGAGTTTCTGGTACGGTGGTCAGCCAGGACGACTTCCAACGGCCTACGTCAACCACGCTGCCGGTGGA GAGACAGTCGAGTCTCTGTACGGCTACGAGCCTTGGCGCTTGGAGCGGCTACGACAGCTCAAGGCCAAGTACGAT CCCAAGAACCATTTCCGTTTCTATAATCCAATCGTCAAAGGTCTGGAAGCGCACCATCTTGAAGAGCCAGGCAAG AATGGATTCAGATCTGTTTACACTTCGACCTCGAAGAGTTTTGGAATCACGCTCAGGTTCGCCACAGTAAGGCCA AATAACGACCGGGTCGACGGCTGGGTTTACAAGATCAAAGCCACGCCAAACATGATTGATATGAATGAATCAGGC GTCAAGAACCACTTCATTCAGGAGCATGAATTCTCGGCGATGGGAGGGATACGCTGGGACCAGATCGAGGCATGG CTACCCGTTCCTCGCCAGTCGGTCGGCGCCCACGATGCGTCATTGCTCTGTCGGAAATTCAACGAAAACGCGGAT TTCCCCAAGTCTTGGATCGCCAACATCGAGTACAACGAAAAGTACAACCAATTCACGGCCAGTGGCGGACAGCCT CAGCTTTCGGGCACTGCGGAAAACGTCAACAAGTACACCAAGTCGCTCGAGGAGTACGGTCTCGAATTCATGAAG AAGAACGGCGAGGCCGTCGGCTGGGATCCGAAGAAGTTTCCGTTTCTGGAACTCAAGGTCCCAGAAGGCGAGTGG AAGGGGCCTCATGAATTGGACGCATTGCTACCTGCATTTAACCTACCGGCGAATGATGAGCCAGTTTGCAAAAAT TGA |
| Gene | >Ophcf2|02401 ATGAATCACATGGCTCGGATTGCGGCTCTCTCGCTCGCTTTACTCGGAACATTGGTTGCTGCGGCCCCTTTCAAC GCTTCCACCGTCCCTCGTTATTTCCAACCTTCCCCTTACACGCGTCGAGGCCTCTCAGTTGTTCAGGTGCAGTAC GAGTTGGGGGCAGTAGTATCGAATGGAACAGCCATCTTCGGGCCTCGAAGCTCGGCGTGGGCTAATGCAACGGAG AGATGGAATACGTTTGATGTGCCTCACATCGAGATCGTTGTGGAGGTCAAGACGGAGGCAGACGTGTCCAAGGTG GTGAGTACACTCTTTGTGTCTGGTCATGTAACGCTGGAAAAAAGCTCATGGTGACGGTGGTTTTAGGTCAAGTAC TGCAACGACAACAGCATCGAGTTCTTGGCCTACACCCGAGGTCACGGCTTCACCTCGACGTTGACCAAGTTTAGG GGCATCGAAATCAACCTCTCTCAACTAAAAGCCATCAAGATCCAGCCCGACGGAAAGTCGGCTTGGTTCCAAGGA GGGACGTATGGAAAACTGGTCATTGATACACTCTGGGATCGCGGCTACGTCACAAGTGAGCAAACTGAGCGCAGT GAAAGCTATATCGAGACCCCAAGACACCCGCTGACAGCAACTCCCCCGAAGCCACCGGAAGCAGCGGCTGCGTCG GCCTCATGGGGCCCGGTCTAGGCGGAGGCTTCGGACGTTACCAAGGACAATACGGTCTCGTGAGCGACAACTTTG TCAACTTGAACGTCGTCCTCGCCGATGGCTCAACGGTGACGGTCAACGAAACCAGCCATTCCGATCTCTTCTGGG CCATGAGGGGAGCCGGTCACAACTTCGGCATCGTGACCAGCGCGGAGCTCAAGATCTATCCTCGCAAGATAGACA CTTGGCATTACCACAATTATGTCTGGGATCAGGACAAGCTGGAAGCCGTTTTCGAGGCTTTGAACAAGTTTCAGG GCAAGGGGGAGATTCCGCCGTTGATGGGCGCCAACTTTGGCCAGTTCTCGGTCGAGCCTGCTACTAACCAGACCA AAGTACGCCCTCTCAAGACGGTTGAAACGGATGAACTCTAGCTGACAGCATGCAGGCCGTCATCAGCTGGACATT TGCGTATGCGGGTCCCGCCCAGGAGGCAGAGGCTTTACTGAAGCCCTTTAATGACATCAAGGCCATCTTGAGTAC TAGCGGAGACGTTCCCTATCCCCAGCTCATGGCTCTTCAGGGAACCGGCATCGATAGCCCATCCTGCGCCTCAAA CCCATACATTGGCGGCACGGCCAACCTGCAGGTCTACAACGTCACCGCCGAGCGCCAGATCATGAATGTCTTGAA CGAGAAGACAGCTCAGCATCCACAGCTCGCGGCCGGAGCTCGAGTTTTTCACGAGGGGTACGCCAGTAAGAGGAC TCAGGAGATTGACCGGCGGTCGACGGCCTATGCTCATCGTGACGATTACCTCGTTGTGTGAGTCCTGACGGGGCT TCACAGACTGACTGATGCTGACTTCTCGTGCAGTTTCTTCGCCGCCGTGGCGTCTCCGGGACTGGAGAAGATTGC CCGGGAGTTGACTCAGGAGGTTCGGAGTTTCTGGTACGGTGGTCAGCCAGGACGACTTCCAACGGCCTACGTCAA CCACGCTGCCGGTGGAGAGACAGTCGAGTCTCTGTACGGCTACGAGCCTTGGCGCTTGGAGCGGCTACGACAGCT CAAGGCCAAGTACGATCCCAAGAACCATTTCCGTTTCTATAATCCAATCGTCAAAGGGTACATGTAACATGTGAG GAGCATGGATGGAATCATCTTGTATACTTTGTAAATAGATCGCCAATACCACATATACTAGAGAGCCCCGATAGT TACAGCGATGAGTGCAGTGACGAGATGCGAGGCTCTCATTCGATAACTCGGTCAATATCGACGTGAGGCGCTCTG CCTCGTACTCCATCCGCTGGGAGTAACTTGATCAAGTTAGGCTTGCATCAAATAGCGTCGACCGTTCAATGCCGC TTATGACGTCAATGTTATCATGATCCCTGCCCGAGTCTGCCTTACCGTCTTACGACACCGACGGCTCAGTACCTA TCTAGTCATGCTGAATCCACCAATCGCTATACGTACAGGATACACGATCTGGAGATCTTTGTAGGAAGTCGAGTT AGACATATCCTTTCCTGCAGAAACTCCACTTCCCGCCATCATGACAAAACAGGCTTCTAGCAAGGCTTTCTTGCT CTGCATCAAACATGTCTGTAATCGTTTAGTCACGGCTCTGAGTCGGTTTCTCGGCATATTGCAAGACCCTGACAA GCCATGAGCCCATGTAAATGGCGATTAAGGCCTTGAGCGTCAAATATTATTTATTACCACTGACACTCGTCCGAC TCGAATCTCTTCACCCTTGGATACGCACGTACTTTCCATTCCCTATAGTCCGAGGAAGCATCCGTCATGAAAGCC ATCCTCGCCATCGGCTTCTTCCTCGCCGGAGCCTCCGTCGCTGCGCCTACCAATGACCCAGCTGAGCTACACAAA CAGCAGGGTATGTAATTGACACCCGTTAATCATCATCTCAACTCCGTCGGCTGACTTTGGACCAGGCCGAGGCCC TTCCGGGTATGTGCCGCGCGTCTCGAACCCTGGTTGCGAAGCAGTTTCGTCAGAAGCCAGCAGTATCAAGACCGT CTACCGTGGCGAAAAAAGGCCGCCATCAGAACTTCGAGCACTTGGTGGGATTCCGGCCAAATGGACAGGACCTCT CACGAACAGGTCTTTCAGTCTGGAAGCGCACCATCTTGAAGAGCCAGGCAAGAATGGATTCAGATCTGTTTACAC TTCGACCTCGAAGAGTTTTGGAATCACGCTCAGGTTCGCCACAGTAAGGCCAAATAACGACCGGGTCGACGGCTG GGTTTACAAGATCAAAGCCACGCCAAACATGATTGATATGAATGAATCAGGCGTCAAGAACCACTTCATTCAGGA GCATGAATTCTCGGCGATGGGAGGGATACGCTGGGACCAGATCGAGGCATGGCTACCCGTTCCTCGCCAGTCGGT CGGCGCCCACGATGCGTCATTGCTCTGTCGGAAATTCAACGAAAACGCGGATTTCCCCAAGTCTTGGATCGCCAA CATCGAGTACAACGAAAAGTACAACCAATTCACGGCCAGTGGCGGACAGCCTCAGCTTTCGGGCACTGCGGAAAA CGTCAACAAGTACACCAAGTCGCTCGAGGAGTACGGTCTCGAATTCATGAAGAAGAACGGCGAGGCCGTCGGCTG GGATCCGAAGAAGTTTCCGTTTCTGGAACTCAAGGTCCCAGAAGGCGAGTGGAAGGGGCCTCATGAATTGGACGC ATTGCTACCTGCATTTAACCTACCGGCGAATGATGAGCCAGTTTGCAAAAATTGA |