© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02383 |
| Gene name | |
| Location | scaffold_02:3506594..3507564 |
| Strand | - |
| Gene length (bp) | 970 |
| Transcript length (bp) | 813 |
| Coding sequence length (bp) | 813 |
| Protein length (aa) | 271 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01184 | Gpr1_Fun34_YaaH | GPR1/FUN34/yaaH family | 6.6E-88 | 42 | 255 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 64 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 59 | 81 | 22 |
| 2 | 91 | 110 | 19 |
| 3 | 122 | 144 | 22 |
| 4 | 154 | 176 | 22 |
| 5 | 181 | 203 | 22 |
| 6 | 213 | 235 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 280.41 | 155.64 | 405.17 |
| Alive | In ants, during behavior modification | 279.61 | 148.86 | 410.35 |
| Dead | In ants, recently dead | 240.87 | 127.38 | 354.35 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.991944 | no |
| Alive | Dead | 0.434976 | no |
| Dead | Fungus | 0.485840 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02383 MSAENASRAPSLELEKEARSGAGPVHRHHHHDYSHMSAGPSAGALQPGLWKPYEHRKLANPAPLGLSAFALTTFV LSAINMHARGVSQPNIVVSIAFGYGGLVQLLAGMWEFACGNTFGATAFSSYGGFWISYGIILTPSWGILSQEGPY HGNVASPVGFFLTGWFIFTTLMLLCTLRSTVSFFLLFFFLDLAFLFLATEQYALDVGHKGLGLVLQKTGGAFGFA AAFLAWYNALSGLQDSSNSFFQVPVLHFPWSDHVRERRKSDRSQA* |
| Coding | >Ophcf2|02383 ATGTCAGCCGAAAACGCCAGCCGCGCTCCATCGCTAGAACTGGAAAAAGAAGCCCGCTCCGGCGCCGGCCCCGTC CACCGCCATCACCATCACGATTACTCCCACATGTCGGCCGGTCCCAGCGCCGGCGCCCTCCAGCCGGGCCTATGG AAGCCCTACGAGCATCGCAAGCTGGCCAATCCCGCGCCTCTCGGTCTCAGCGCCTTCGCCCTCACCACCTTCGTC CTGTCCGCTATCAATATGCATGCCCGCGGCGTGTCTCAGCCAAACATCGTCGTCTCAATCGCCTTCGGCTACGGC GGCCTCGTTCAGCTTCTCGCCGGCATGTGGGAGTTTGCCTGCGGTAACACATTCGGTGCCACCGCCTTCTCGTCA TATGGCGGCTTCTGGATCTCGTACGGCATCATCCTCACCCCCTCCTGGGGCATCCTCTCCCAAGAGGGCCCCTAC CACGGCAACGTCGCCAGCCCCGTCGGCTTCTTTCTCACCGGCTGGTTCATCTTCACCACCCTCATGCTGCTCTGC ACCCTTCGTTCCACCGTCAGCTTCTTCCTCCTCTTCTTCTTCCTCGATCTGGCCTTCCTCTTCCTCGCCACCGAG CAGTACGCCCTCGACGTCGGCCACAAGGGTCTCGGCCTCGTGCTGCAGAAGACGGGCGGCGCCTTCGGTTTCGCA GCCGCTTTCCTGGCCTGGTATAACGCGCTGTCCGGACTCCAGGACAGCAGCAACTCGTTCTTCCAGGTGCCCGTC CTGCACTTCCCCTGGTCCGATCACGTCCGCGAGCGCCGCAAAAGTGATCGCTCTCAGGCCTGA |
| Transcript | >Ophcf2|02383 ATGTCAGCCGAAAACGCCAGCCGCGCTCCATCGCTAGAACTGGAAAAAGAAGCCCGCTCCGGCGCCGGCCCCGTC CACCGCCATCACCATCACGATTACTCCCACATGTCGGCCGGTCCCAGCGCCGGCGCCCTCCAGCCGGGCCTATGG AAGCCCTACGAGCATCGCAAGCTGGCCAATCCCGCGCCTCTCGGTCTCAGCGCCTTCGCCCTCACCACCTTCGTC CTGTCCGCTATCAATATGCATGCCCGCGGCGTGTCTCAGCCAAACATCGTCGTCTCAATCGCCTTCGGCTACGGC GGCCTCGTTCAGCTTCTCGCCGGCATGTGGGAGTTTGCCTGCGGTAACACATTCGGTGCCACCGCCTTCTCGTCA TATGGCGGCTTCTGGATCTCGTACGGCATCATCCTCACCCCCTCCTGGGGCATCCTCTCCCAAGAGGGCCCCTAC CACGGCAACGTCGCCAGCCCCGTCGGCTTCTTTCTCACCGGCTGGTTCATCTTCACCACCCTCATGCTGCTCTGC ACCCTTCGTTCCACCGTCAGCTTCTTCCTCCTCTTCTTCTTCCTCGATCTGGCCTTCCTCTTCCTCGCCACCGAG CAGTACGCCCTCGACGTCGGCCACAAGGGTCTCGGCCTCGTGCTGCAGAAGACGGGCGGCGCCTTCGGTTTCGCA GCCGCTTTCCTGGCCTGGTATAACGCGCTGTCCGGACTCCAGGACAGCAGCAACTCGTTCTTCCAGGTGCCCGTC CTGCACTTCCCCTGGTCCGATCACGTCCGCGAGCGCCGCAAAAGTGATCGCTCTCAGGCCTGA |
| Gene | >Ophcf2|02383 ATGTCAGCCGAAAACGCCAGCCGCGCTCCATCGCTAGAACTGGAAAAAGAAGCCCGCTCCGGCGCCGGCCCCGTC CACCGCCATCACCATCACGATTACTCCCACATGTCGGCCGGTCCCAGCGCCGGCGCCCTCCAGCCGGGCCTATGG AAGCCCTACGAGCATCGCAAGCTGGCCAATCCCGCGCCTCTCGGTCTCAGCGCCTTCGCCCTCACCACCTTCGTC CTGTCCGCTATCAATATGCATGCCCGCGGCGTGTCTCAGCCAAACATCGTCGTCTCAATCGCCTTCGGCTACGGC GGCCTCGTTCAGCTTCTCGCCGGCATGTGGTGAGTCGCCCTAGTTTATCGTCTTGTCTCTCTCTCTCACCTTAGT GTTTCCTCTTTTATCCTCTCATATATCTATACGTACTCAGATTCTGACCCCATTGACCAGGGAGTTTGCCTGCGG TAACACATTCGGTGCCACCGCCTTCTCGTCATATGGCGGCTTCTGGATCTCGTACGGCATCATCCTCACCCCCTC CTGGGGCATCCTCTCCCAAGAGGGCCCCTACCACGGCAACGTCGCCAGCCCCGTCGGCTTCTTTCTCACCGGCTG GTTCATCTTCACCACCCTCATGCTGCTCTGCACCCTTCGTTCCACCGTCAGCTTCTTCCTCCTCTTCTTCTTCCT CGATCTGGCCTTCCTCTTCCTCGCCACCGAGCAGTACGCCCTCGACGTCGGCCACAAGGGTCTCGGCCTCGTGCT GCAGAAGACGGGCGGCGCCTTCGGTTTCGCAGCCGCTTTCCTGGCCTGGTATAACGCGCTGTCCGGACTCCAGGA CAGCAGGTCAGTTGGCCCTGAACTCGGACCTTGTTCAGCAGACTGACTCTTCCGCAGCAACTCGTTCTTCCAGGT GCCCGTCCTGCACTTCCCCTGGTCCGATCACGTCCGCGAGCGCCGCAAAAGTGATCGCTCTCAGGCCTGA |