Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|02377
Gene name
Locationscaffold_02:3492089..3493628
Strand-
Gene length (bp)1539
Transcript length (bp)1386
Coding sequence length (bp)1386
Protein length (aa) 462

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00494 SQS_PSY Squalene/phytoene synthase 6.6E-37 48 323

GO

GO Term Description Terminal node
GO:0009058 biosynthetic process Yes
GO:0008152 metabolic process No
GO:0008150 biological_process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 29 0.45

Transmembrane Domains

Domain # Start End Length
1 408 430 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|02377
MGAIYYLLHPYQLRSIIQWKLWHNPVHQRDTASESETLKECFRYLTLTSRSFATVIQELDHELLVPVALFYLVLR
GLDTIEDDMTIAVAEKVALLQKFDHSMTQDGWQFHDSSERDRELLANFDVVVTELKKLKPAYLEIIRDIASKMGN
GMADYVQNTKMIEDGIQTIEEYELYCHYVAGLVGEGLTRLFVESKLGNPKLLERPSLTESMGQFLQKTNIIRDIH
EDWQDGRRWYPKEIWRKHVDEWEHMFDGSHRQQAINCITEMVLDALKHVEECLFYMAGMREQSVFNFVVIPQAMA
IATLELVFRNPAVLERNVKITKGDACQIMLESTQNLSTACNVFRTYARRIQAKNDPRDPNYLAVSVRCAKIEQFI
ETLFPTQDAGRAELEKTSGPEKEPPMGSGETFMLFAIVMACLLVVSGVMVGTAWLMGARFPILSDLSQLTGTLLS
GPKAGSGRDEL*
Coding >Ophcf2|02377
ATGGGCGCCATATACTACCTGCTGCACCCGTACCAGCTGCGGTCCATAATTCAGTGGAAGCTCTGGCACAATCCC
GTTCATCAACGCGACACGGCCTCCGAGTCGGAGACGCTCAAAGAATGCTTTCGCTACCTGACCCTGACGAGTCGC
AGCTTTGCGACCGTCATCCAGGAGCTGGATCACGAGCTGCTCGTACCCGTCGCCCTCTTCTATCTCGTTCTGCGT
GGCCTCGACACCATCGAAGACGACATGACGATTGCCGTGGCGGAAAAAGTTGCCCTTCTCCAAAAATTTGATCAC
TCCATGACCCAGGACGGTTGGCAATTCCACGATAGCAGCGAGAGGGACCGAGAACTGCTGGCAAACTTTGACGTC
GTCGTCACCGAGCTCAAGAAGCTCAAGCCGGCTTACTTGGAAATTATCCGAGATATTGCGTCCAAGATGGGCAAC
GGCATGGCCGACTACGTGCAGAACACAAAGATGATAGAAGACGGCATTCAGACGATAGAAGAGTACGAGCTTTAC
TGTCATTACGTCGCCGGCCTCGTCGGCGAGGGCTTGACGCGCCTCTTTGTCGAGTCGAAGCTCGGCAACCCCAAG
CTACTAGAACGGCCGTCGCTGACCGAGTCCATGGGCCAGTTCCTACAGAAGACCAACATCATCCGCGACATCCAC
GAAGATTGGCAAGACGGGAGGCGCTGGTATCCCAAGGAGATCTGGCGCAAGCACGTCGACGAGTGGGAGCACATG
TTTGACGGAAGCCATCGCCAACAGGCCATCAACTGCATCACGGAAATGGTGCTGGACGCACTCAAACATGTCGAG
GAGTGTCTATTCTACATGGCAGGCATGCGGGAGCAGAGCGTCTTCAATTTCGTCGTCATCCCACAGGCCATGGCC
ATTGCCACCCTGGAGCTCGTCTTTCGCAACCCGGCCGTGCTCGAGCGCAACGTAAAAATCACAAAGGGAGATGCC
TGTCAGATCATGCTCGAGTCGACGCAAAACCTCTCGACTGCCTGCAACGTCTTCCGGACATACGCCCGACGGATA
CAGGCCAAGAACGACCCTCGCGATCCAAACTACCTGGCCGTGAGCGTGCGCTGCGCCAAGATTGAACAATTCATC
GAAACCCTCTTCCCAACTCAAGACGCAGGCAGGGCCGAGCTCGAAAAGACGTCAGGTCCCGAAAAGGAGCCACCG
ATGGGCTCGGGCGAGACGTTTATGCTGTTTGCCATTGTAATGGCCTGCCTGCTCGTCGTTTCGGGCGTTATGGTT
GGCACGGCGTGGCTGATGGGTGCCCGGTTTCCCATCCTGTCGGACCTCTCACAGTTAACGGGAACCCTGTTATCG
GGTCCGAAAGCCGGCAGTGGACGCGACGAGCTCTAG
Transcript >Ophcf2|02377
ATGGGCGCCATATACTACCTGCTGCACCCGTACCAGCTGCGGTCCATAATTCAGTGGAAGCTCTGGCACAATCCC
GTTCATCAACGCGACACGGCCTCCGAGTCGGAGACGCTCAAAGAATGCTTTCGCTACCTGACCCTGACGAGTCGC
AGCTTTGCGACCGTCATCCAGGAGCTGGATCACGAGCTGCTCGTACCCGTCGCCCTCTTCTATCTCGTTCTGCGT
GGCCTCGACACCATCGAAGACGACATGACGATTGCCGTGGCGGAAAAAGTTGCCCTTCTCCAAAAATTTGATCAC
TCCATGACCCAGGACGGTTGGCAATTCCACGATAGCAGCGAGAGGGACCGAGAACTGCTGGCAAACTTTGACGTC
GTCGTCACCGAGCTCAAGAAGCTCAAGCCGGCTTACTTGGAAATTATCCGAGATATTGCGTCCAAGATGGGCAAC
GGCATGGCCGACTACGTGCAGAACACAAAGATGATAGAAGACGGCATTCAGACGATAGAAGAGTACGAGCTTTAC
TGTCATTACGTCGCCGGCCTCGTCGGCGAGGGCTTGACGCGCCTCTTTGTCGAGTCGAAGCTCGGCAACCCCAAG
CTACTAGAACGGCCGTCGCTGACCGAGTCCATGGGCCAGTTCCTACAGAAGACCAACATCATCCGCGACATCCAC
GAAGATTGGCAAGACGGGAGGCGCTGGTATCCCAAGGAGATCTGGCGCAAGCACGTCGACGAGTGGGAGCACATG
TTTGACGGAAGCCATCGCCAACAGGCCATCAACTGCATCACGGAAATGGTGCTGGACGCACTCAAACATGTCGAG
GAGTGTCTATTCTACATGGCAGGCATGCGGGAGCAGAGCGTCTTCAATTTCGTCGTCATCCCACAGGCCATGGCC
ATTGCCACCCTGGAGCTCGTCTTTCGCAACCCGGCCGTGCTCGAGCGCAACGTAAAAATCACAAAGGGAGATGCC
TGTCAGATCATGCTCGAGTCGACGCAAAACCTCTCGACTGCCTGCAACGTCTTCCGGACATACGCCCGACGGATA
CAGGCCAAGAACGACCCTCGCGATCCAAACTACCTGGCCGTGAGCGTGCGCTGCGCCAAGATTGAACAATTCATC
GAAACCCTCTTCCCAACTCAAGACGCAGGCAGGGCCGAGCTCGAAAAGACGTCAGGTCCCGAAAAGGAGCCACCG
ATGGGCTCGGGCGAGACGTTTATGCTGTTTGCCATTGTAATGGCCTGCCTGCTCGTCGTTTCGGGCGTTATGGTT
GGCACGGCGTGGCTGATGGGTGCCCGGTTTCCCATCCTGTCGGACCTCTCACAGTTAACGGGAACCCTGTTATCG
GGTCCGAAAGCCGGCAGTGGACGCGACGAGCTCTAG
Gene >Ophcf2|02377
ATGGGCGCCATATACTACCTGCTGCACCCGTACCAGCTGCGGTCCATAATTCAGTGGTGAGTTGTCTGTCCCGGC
ATCGGCTTCGGGCGCTCACATGTTTTATGTTGCAGGAAGCTCTGGCACAATCCCGTTCATCAACGCGACACGGCC
TCCGAGTCGGAGACGCTCAAAGAATGCTTTCGCTACCTGACCCTGACGAGTCGCAGCTTTGCGACCGTCATCCAG
GAGCTGGATCACGAGCTGCTCGTACCCGTCGCCCTCTTCTATCTCGTTCTGCGTGGCCTCGACACCATCGAAGAC
GACATGACGATTGCCGTGGCGGAAAAAGTTGCCCTTCTCCAAAAATTTGATCACTCCATGACCCAGGACGGTTGG
CAATTCCACGATAGCAGCGAGAGGGACCGAGAACTGCTGGCAAACTTTGACGTCGTCGTCACCGAGCTCAAGAAG
CTCAAGCCGGCTTACTTGGAAATTATCCGAGATATTGCGTCCAAGATGGGCAACGGCATGGCCGACTACGTGCAG
AACACAAAGATGATAGAAGACGGCATTCAGACGATAGAAGAGTACGAGCTTTACTGTCATTACGTCGCCGGCCTC
GTCGGCGAGGGCTTGACGCGCCTCTTTGTCGAGTCGAAGCTCGGCAACCCCAAGCTACTAGAACGGCCGTCGCTG
ACCGAGTCCATGGGCCAGTTCCTACAGAAGACCAACATCATCCGCGACATCCACGAAGATTGGCAAGACGGGAGG
CGCTGGTATCCCAAGGAGATCTGGCGCAAGCACGTCGACGAGTGGGAGCACATGTTTGACGGAAGCCATCGCCAA
CAGGCCATCAACTGCATCACGGAAATGGTGCTGGACGCACTCAAACATGTCGAGGAGTGTCTATTCTACATGGCA
GGCATGCGGGAGCAGAGCGTCTTCAATTTCGTCGTCATCCCACAGGCCATGGCCATTGCCACCCTGGAGCTCGTC
TTTCGCAACCCGGCCGTGCTCGAGCGCAACGTAAAAATCACAAAGGGAGATGCCTGTCAGATCATGCTCGAGTCG
ACGCAAAACCTCTCGACTGCCTGCAACGTCTTCCGGACATACGCCCGACGGATACAGGCCAAGAACGACCCTCGC
GATCCAAACTACCTGGCCGTGAGCGTGCGCTGCGCCAAGGTGGGCATCGACGACATATGAAGGATTGGAAGCCAT
GCTGATCGAGACGACAGATTGAACAATTCATCGAAACCCTCTTCCCAACTCAAGACGCAGGCAGGGCCGAGCTCG
AAAAGACGTCAGGTCCCGAAAAGGAGCCACCGATGGGCTCGGGCGAGACGTTTATGCTGTTTGCCATTGTAATGG
CCTGCCTGCTCGTCGTTTCGGGCGTTATGGTGAGCGAACCCGCTGAGAAGGAGAGCTGCTACTGACGGCTTTTAG
GTTGGCACGGCGTGGCTGATGGGTGCCCGGTTTCCCATCCTGTCGGACCTCTCACAGTTAACGGGAACCCTGTTA
TCGGGTCCGAAAGCCGGCAGTGGACGCGACGAGCTCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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