© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02370 |
| Gene name | |
| Location | scaffold_02:3477916..3478624 |
| Strand | - |
| Gene length (bp) | 708 |
| Transcript length (bp) | 708 |
| Coding sequence length (bp) | 708 |
| Protein length (aa) | 236 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01988 | VIT1 | VIT family | 4.3E-53 | 9 | 213 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030026 | cellular manganese ion homeostasis | Yes |
| GO:0005384 | manganese ion transmembrane transporter activity | Yes |
| GO:0006873 | cellular ion homeostasis | No |
| GO:0055082 | cellular chemical homeostasis | No |
| GO:0065008 | regulation of biological quality | No |
| GO:0009987 | cellular process | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0046915 | transition metal ion transmembrane transporter activity | No |
| GO:0006875 | cellular metal ion homeostasis | No |
| GO:0046916 | cellular transition metal ion homeostasis | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0055076 | transition metal ion homeostasis | No |
| GO:0019725 | cellular homeostasis | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0030003 | cellular cation homeostasis | No |
| GO:0003674 | molecular_function | No |
| GO:0098771 | inorganic ion homeostasis | No |
| GO:0048878 | chemical homeostasis | No |
| GO:0055071 | manganese ion homeostasis | No |
| GO:0042592 | homeostatic process | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0055065 | metal ion homeostasis | No |
| GO:0065007 | biological regulation | No |
| GO:0046873 | metal ion transmembrane transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0055080 | cation homeostasis | No |
| GO:0050801 | ion homeostasis | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Transmembrane domain | 0.1246 | 0.1664 | 0.1059 | 0.0781 | 0.3599 | 0.0125 | 0.5134 | 0.5448 | 0.255 | 0.0366 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 39 | 61 | 22 |
| 3 | 130 | 152 | 22 |
| 4 | 156 | 178 | 22 |
| 5 | 190 | 212 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 5924 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02370 MDLADTLHHVIIGFSDGLTVPFALTAGLSSLGSTRLVVIGGLAELFSGMISMGLGAYLAAVTERDRSRQERQLAG QVDLYALLRDCYAISPSVARALVNDLGQDHDVRCQRLRDDLIHQRDHDPSRIRPCLAGFTMGASYFIGGLIPMIP YFFVARVRDALCISVIVTVAVLLVFGYVKDYLAIRNHRAGCWGAFLTLVIGVVAAGTSYAIVRALDAAGDSLSIL DSSRSVLSVK* |
| Coding | >Ophcf2|02370 ATGGACCTAGCCGACACGCTCCACCACGTCATCATCGGCTTCTCAGACGGTCTGACCGTTCCCTTTGCCCTCACC GCCGGCCTCTCCTCCCTCGGCAGCACCCGACTGGTCGTCATCGGCGGTCTGGCCGAGCTCTTCTCCGGCATGATT AGCATGGGGCTGGGCGCTTACCTCGCCGCCGTGACGGAGAGAGACCGCTCGAGACAGGAGCGCCAGCTTGCCGGT CAGGTCGATCTATACGCCCTGCTACGCGACTGCTATGCCATCTCGCCCTCCGTGGCGAGGGCCCTGGTCAATGAC CTCGGTCAGGACCACGACGTCCGCTGTCAACGTCTCCGCGATGATCTCATTCACCAGCGGGATCACGATCCTTCT CGCATCCGTCCGTGTCTCGCTGGCTTCACCATGGGCGCCAGCTACTTCATCGGAGGCCTCATCCCCATGATCCCC TACTTCTTCGTCGCCCGCGTCCGCGACGCTCTCTGCATCTCCGTCATCGTCACCGTCGCCGTCCTCCTCGTCTTT GGCTACGTCAAGGATTATCTGGCCATTCGCAATCACCGCGCCGGCTGCTGGGGCGCCTTCCTTACTCTCGTTATA GGCGTCGTCGCCGCCGGCACGAGCTACGCCATCGTCCGAGCCTTGGATGCCGCTGGCGATTCTCTCTCCATCTTA GATTCTTCTAGATCTGTTCTATCTGTCAAATAG |
| Transcript | >Ophcf2|02370 ATGGACCTAGCCGACACGCTCCACCACGTCATCATCGGCTTCTCAGACGGTCTGACCGTTCCCTTTGCCCTCACC GCCGGCCTCTCCTCCCTCGGCAGCACCCGACTGGTCGTCATCGGCGGTCTGGCCGAGCTCTTCTCCGGCATGATT AGCATGGGGCTGGGCGCTTACCTCGCCGCCGTGACGGAGAGAGACCGCTCGAGACAGGAGCGCCAGCTTGCCGGT CAGGTCGATCTATACGCCCTGCTACGCGACTGCTATGCCATCTCGCCCTCCGTGGCGAGGGCCCTGGTCAATGAC CTCGGTCAGGACCACGACGTCCGCTGTCAACGTCTCCGCGATGATCTCATTCACCAGCGGGATCACGATCCTTCT CGCATCCGTCCGTGTCTCGCTGGCTTCACCATGGGCGCCAGCTACTTCATCGGAGGCCTCATCCCCATGATCCCC TACTTCTTCGTCGCCCGCGTCCGCGACGCTCTCTGCATCTCCGTCATCGTCACCGTCGCCGTCCTCCTCGTCTTT GGCTACGTCAAGGATTATCTGGCCATTCGCAATCACCGCGCCGGCTGCTGGGGCGCCTTCCTTACTCTCGTTATA GGCGTCGTCGCCGCCGGCACGAGCTACGCCATCGTCCGAGCCTTGGATGCCGCTGGCGATTCTCTCTCCATCTTA GATTCTTCTAGATCTGTTCTATCTGTCAAATAG |
| Gene | >Ophcf2|02370 ATGGACCTAGCCGACACGCTCCACCACGTCATCATCGGCTTCTCAGACGGTCTGACCGTTCCCTTTGCCCTCACC GCCGGCCTCTCCTCCCTCGGCAGCACCCGACTGGTCGTCATCGGCGGTCTGGCCGAGCTCTTCTCCGGCATGATT AGCATGGGGCTGGGCGCTTACCTCGCCGCCGTGACGGAGAGAGACCGCTCGAGACAGGAGCGCCAGCTTGCCGGT CAGGTCGATCTATACGCCCTGCTACGCGACTGCTATGCCATCTCGCCCTCCGTGGCGAGGGCCCTGGTCAATGAC CTCGGTCAGGACCACGACGTCCGCTGTCAACGTCTCCGCGATGATCTCATTCACCAGCGGGATCACGATCCTTCT CGCATCCGTCCGTGTCTCGCTGGCTTCACCATGGGCGCCAGCTACTTCATCGGAGGCCTCATCCCCATGATCCCC TACTTCTTCGTCGCCCGCGTCCGCGACGCTCTCTGCATCTCCGTCATCGTCACCGTCGCCGTCCTCCTCGTCTTT GGCTACGTCAAGGATTATCTGGCCATTCGCAATCACCGCGCCGGCTGCTGGGGCGCCTTCCTTACTCTCGTTATA GGCGTCGTCGCCGCCGGCACGAGCTACGCCATCGTCCGAGCCTTGGATGCCGCTGGCGATTCTCTCTCCATCTTA GATTCTTCTAGATCTGTTCTATCTGTCAAATAG |