© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02354 |
| Gene name | |
| Location | scaffold_02:3442474..3444104 |
| Strand | - |
| Gene length (bp) | 1630 |
| Transcript length (bp) | 1506 |
| Coding sequence length (bp) | 1506 |
| Protein length (aa) | 502 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13641 | Glyco_tranf_2_3 | Glycosyltransferase like family 2 | 1.3E-26 | 72 | 315 |
| PF13506 | Glyco_transf_21 | Glycosyl transferase family 21 | 3.5E-07 | 141 | 315 |
| PF00535 | Glycos_transf_2 | Glycosyl transferase family 2 | 3.4E-06 | 74 | 251 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016757 | glycosyltransferase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0016740 | transferase activity | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 342 | 364 | 22 |
| 2 | 376 | 398 | 22 |
| 3 | 405 | 427 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 11.47 | 4.86 | 18.07 |
| Alive | In ants, during behavior modification | 13.28 | 5.77 | 20.80 |
| Dead | In ants, recently dead | 29.31 | 15.42 | 43.20 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.611958 | no |
| Alive | Dead | 0.000238 | yes |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02354 MNDAAVAQLLAGIAGRALVRLINSPRTSPLAWAIVFWILWIHRYLRLLVHCVSHWTYKSKPIPEKPSYTSREVTV VIPTIHNVFEELRPSIESILICDPQELILVTTDPKRAELEKLAASLRVYDGNDKRCNRVSVYSTPIANKRLQVRE ALPHVKTEITIMADDDVTWPTTMLPWILAPFEDKDMGGVGTCQRAKRDRSGSVASSIWNWLGAAYIERRNFEISA THNIDGGTSCMSGRTGAYRTSILQKYDFLDGLINEKWRRWILNADDDNFVTRWLVSHQWKTWVQYEPECELETTL ENNTKFLYQCTRWARSNWRSNWTSLVQERYVWTQQPWCTYALHFATFTSLAFVVDALLLVSCWLATSEWELYQRR WAFWSLFVFIFAFTKTVKLVGLWRRHPVDIIFLPVSIAFGYFHGLIKLYALLTLNMTSWGSRADGDADNDKRLVN LLPRADVLQNPDGTALVRYNDECPGIDPPRGRDHTKRMMPTAKPAVGQVPS* |
| Coding | >Ophcf2|02354 ATGAACGACGCTGCCGTGGCCCAGCTGCTGGCGGGAATCGCGGGCCGTGCTCTGGTGCGCCTCATCAACTCTCCG CGGACCTCGCCCCTCGCATGGGCCATTGTGTTTTGGATCCTCTGGATCCATCGCTACCTGCGTCTGCTCGTCCAT TGCGTCAGTCACTGGACCTACAAGTCGAAGCCGATCCCGGAGAAGCCAAGCTACACGTCCCGAGAAGTCACGGTT GTGATTCCAACCATCCACAACGTCTTTGAAGAGCTGCGACCGTCGATCGAGAGTATCCTCATCTGCGACCCCCAA GAGCTGATCCTGGTGACGACGGATCCCAAGCGGGCCGAGCTCGAGAAGCTGGCGGCCTCGCTCCGTGTCTACGAT GGCAACGACAAGCGCTGCAACCGCGTGAGCGTCTACAGCACCCCCATCGCCAACAAACGGCTTCAGGTACGAGAG GCTCTCCCTCACGTGAAGACGGAGATCACCATCATGGCCGACGACGACGTCACCTGGCCGACGACGATGCTCCCC TGGATCCTGGCCCCCTTTGAGGACAAGGACATGGGAGGCGTCGGCACCTGTCAGCGGGCCAAGCGAGACAGGTCC GGCTCCGTAGCCTCAAGCATCTGGAACTGGCTCGGGGCGGCTTATATCGAGCGGCGCAACTTTGAGATATCGGCC ACGCACAACATTGATGGAGGCACCTCGTGTATGTCGGGTCGGACGGGAGCCTACCGAACGTCCATCCTTCAGAAG TACGACTTCCTCGATGGCCTCATCAACGAGAAGTGGCGTCGCTGGATCCTCAACGCCGACGACGACAACTTCGTC ACCCGCTGGCTCGTCTCTCACCAGTGGAAGACTTGGGTTCAGTACGAGCCCGAGTGCGAGCTCGAGACCACGCTG GAGAACAACACCAAGTTCCTGTATCAGTGTACGCGTTGGGCGCGCAGCAACTGGCGCAGCAACTGGACCAGCCTC GTACAGGAGCGTTACGTCTGGACTCAGCAGCCCTGGTGCACCTACGCCCTTCACTTCGCCACTTTTACCTCGCTG GCCTTTGTCGTCGATGCGCTGCTTCTCGTCTCGTGCTGGCTGGCTACGTCGGAGTGGGAGCTTTACCAGCGCCGG TGGGCGTTTTGGTCGCTCTTCGTCTTCATCTTTGCCTTTACCAAGACGGTGAAGCTGGTCGGCCTTTGGAGGCGT CATCCCGTCGACATCATCTTCCTGCCCGTGTCCATTGCCTTTGGATACTTTCACGGGCTGATCAAGCTGTACGCT CTGTTGACGCTGAACATGACTTCCTGGGGCAGCCGTGCCGACGGAGACGCCGACAACGACAAACGCCTCGTCAAT CTTCTCCCGCGCGCCGACGTGCTGCAGAACCCCGATGGTACGGCCCTGGTCCGTTACAATGACGAATGCCCCGGC ATCGATCCGCCCCGAGGCCGGGATCACACTAAGAGGATGATGCCCACGGCCAAGCCTGCAGTTGGTCAAGTGCCG TCGTGA |
| Transcript | >Ophcf2|02354 ATGAACGACGCTGCCGTGGCCCAGCTGCTGGCGGGAATCGCGGGCCGTGCTCTGGTGCGCCTCATCAACTCTCCG CGGACCTCGCCCCTCGCATGGGCCATTGTGTTTTGGATCCTCTGGATCCATCGCTACCTGCGTCTGCTCGTCCAT TGCGTCAGTCACTGGACCTACAAGTCGAAGCCGATCCCGGAGAAGCCAAGCTACACGTCCCGAGAAGTCACGGTT GTGATTCCAACCATCCACAACGTCTTTGAAGAGCTGCGACCGTCGATCGAGAGTATCCTCATCTGCGACCCCCAA GAGCTGATCCTGGTGACGACGGATCCCAAGCGGGCCGAGCTCGAGAAGCTGGCGGCCTCGCTCCGTGTCTACGAT GGCAACGACAAGCGCTGCAACCGCGTGAGCGTCTACAGCACCCCCATCGCCAACAAACGGCTTCAGGTACGAGAG GCTCTCCCTCACGTGAAGACGGAGATCACCATCATGGCCGACGACGACGTCACCTGGCCGACGACGATGCTCCCC TGGATCCTGGCCCCCTTTGAGGACAAGGACATGGGAGGCGTCGGCACCTGTCAGCGGGCCAAGCGAGACAGGTCC GGCTCCGTAGCCTCAAGCATCTGGAACTGGCTCGGGGCGGCTTATATCGAGCGGCGCAACTTTGAGATATCGGCC ACGCACAACATTGATGGAGGCACCTCGTGTATGTCGGGTCGGACGGGAGCCTACCGAACGTCCATCCTTCAGAAG TACGACTTCCTCGATGGCCTCATCAACGAGAAGTGGCGTCGCTGGATCCTCAACGCCGACGACGACAACTTCGTC ACCCGCTGGCTCGTCTCTCACCAGTGGAAGACTTGGGTTCAGTACGAGCCCGAGTGCGAGCTCGAGACCACGCTG GAGAACAACACCAAGTTCCTGTATCAGTGTACGCGTTGGGCGCGCAGCAACTGGCGCAGCAACTGGACCAGCCTC GTACAGGAGCGTTACGTCTGGACTCAGCAGCCCTGGTGCACCTACGCCCTTCACTTCGCCACTTTTACCTCGCTG GCCTTTGTCGTCGATGCGCTGCTTCTCGTCTCGTGCTGGCTGGCTACGTCGGAGTGGGAGCTTTACCAGCGCCGG TGGGCGTTTTGGTCGCTCTTCGTCTTCATCTTTGCCTTTACCAAGACGGTGAAGCTGGTCGGCCTTTGGAGGCGT CATCCCGTCGACATCATCTTCCTGCCCGTGTCCATTGCCTTTGGATACTTTCACGGGCTGATCAAGCTGTACGCT CTGTTGACGCTGAACATGACTTCCTGGGGCAGCCGTGCCGACGGAGACGCCGACAACGACAAACGCCTCGTCAAT CTTCTCCCGCGCGCCGACGTGCTGCAGAACCCCGATGGTACGGCCCTGGTCCGTTACAATGACGAATGCCCCGGC ATCGATCCGCCCCGAGGCCGGGATCACACTAAGAGGATGATGCCCACGGCCAAGCCTGCAGTTGGTCAAGTGCCG TCGTGA |
| Gene | >Ophcf2|02354 ATGAACGACGCTGCCGTGGCCCAGCTGCTGGCGGGAATCGCGGGCCGTGCTCTGGTGCGCCTCATCAACTCTCCG CGGACCTCGCCCCTCGCATGGGCCATTGTGTTTTGGATCCTCTGGTAAGAAGAAGAGAGTGAGTTGGGTGTCAAG GAACTAGGTCAACTGACTTGTTCTCGACAACAGGATCCATCGCTACCTGCGTCTGCTCGTCCATTGCGTCAGTCA CTGGACCTACAAGTCGAAGCCGATCCCGGAGAAGCCAAGCTACACGTCCCGAGAAGTCACGGTTGTGATTCCAAC CATCCACAACGTCTTTGAAGAGCTGCGACCGTCGATCGAGAGTATCCTCATCTGCGACCCCCAAGAGCTGATCCT GGTGACGACGGATCCCAAGCGGGCCGAGCTCGAGAAGCTGGCGGCCTCGCTCCGTGTCTACGATGGCAACGACAA GCGCTGCAACCGCGTGAGCGTCTACAGCACCCCCATCGCCAACAAACGGCTTCAGGTACGAGAGGCTCTCCCTCA CGTGAAGACGGAGATCACCATCATGGCCGACGACGACGTCACCTGGCCGACGACGATGCTCCCCTGGATCCTGGC CCCCTTTGAGGACAAGGACATGGGAGGCGTCGGCACCTGTCAGCGGGCCAAGCGAGACAGGTCCGGCTCCGTAGC CTCAAGCATCTGGAACTGGCTCGGGGCGGCTTATATCGAGCGGCGCAACTTTGAGATATCGGCCACGCACAACAT TGATGGAGGCACCTCGTGTATGTCGGGTCGGACGGGAGCCTACCGAACGTCCATCCTTCAGAAGTACGACTTCCT CGATGGCCTCATCAACGAGAAGTGGCGTCGCTGGATCCTCAACGCCGACGACGACAACTTCGTCACCCGCTGGCT CGTCTCTCACCAGTGGAAGACTTGGGTTCAGTACGAGCCCGAGTGCGAGCTCGAGACCACGCTGGAGAACAACAC CAAGTTCCTGTATCAGTGTACGCGTTGGGCGCGCAGCAACTGGCGCAGCAACTGGACCAGCCTCGTACAGGAGCG TTACGTCTGGACTCAGCAGCCCTGGTGCACCTACGCCCTTCACTTCGCCACTTTTACCTCGCTGGCCTTTGTCGT CGATGCGCTGCTTCTCGTCTCGTGCTGGCTGGCTACGTCGGAGTGGGAGCTTTACCAGCGCCGGTGGGCGTTTTG GTCGCTCTTCGTCTTCATCTTTGCCTTTACCAAGACGGTGAAGCTGGTCGGCCTTTGGAGGCGTCATCCCGTCGA CATCATCTTCCTGCCCGTGTCCATTGCCTTTGGATACTTTCACGGGCTGATCAAGCTGTACGCTCTGTTGACGCT GAACATGGTGAGTGACATACAATCTTTACAGACATGGACCCGTAAACTGACTGACCTCCTCTTTCAGACTTCCTG GGGCAGCCGTGCCGACGGAGACGCCGACAACGACAAACGCCTCGTCAATCTTCTCCCGCGCGCCGACGTGCTGCA GAACCCCGATGGTACGGCCCTGGTCCGTTACAATGACGAATGCCCCGGCATCGATCCGCCCCGAGGCCGGGATCA CACTAAGAGGATGATGCCCACGGCCAAGCCTGCAGTTGGTCAAGTGCCGTCGTGA |