© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02343 |
| Gene name | |
| Location | scaffold_02:3409195..3411288 |
| Strand | - |
| Gene length (bp) | 2093 |
| Transcript length (bp) | 1494 |
| Coding sequence length (bp) | 1494 |
| Protein length (aa) | 498 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1851 | 0.1598 | 0.1532 | 0.5382 | 0.0982 | 0.0011 | 0.1947 | 0.6329 | 0.5324 | 0.0038 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 162 | 184 | 22 |
| 2 | 208 | 227 | 19 |
| 3 | 234 | 256 | 22 |
| 4 | 288 | 310 | 22 |
| 5 | 336 | 358 | 22 |
| 6 | 368 | 387 | 19 |
| 7 | 394 | 412 | 18 |
| 8 | 432 | 454 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 55.52 | 31.59 | 79.45 |
| Alive | In ants, during behavior modification | 112.26 | 62.65 | 161.87 |
| Dead | In ants, recently dead | 83.47 | 47.87 | 119.07 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.063972 | no |
| Dead | Fungus | 0.025389 | yes |
| Orthofinder run ID | 4 |
| Orthogroup | 1431 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02343 MPALFLQVPTATPSSVNYCVIARATPPPGPWLNVSFALFSVQHHAPVSRSVLAPPSFSSLDLLFIHHRHSHQSSR LQSLVQPALAQSPVLATRTSSLDYNSKYSREFGQAYPQPAYSQPAYAENANLNAGFDQGYAYRQGLASSNPARSV YRDRMSFLKSKWPAAFMAVASLQAIVCLAFESFVFASFQSSLGRYDNKPDVQSQYKTIPTFLTLIIFGFLYELVV VWDALRMKNTIQVIGVCIANLALLVYTAIQVDQIQMAISTLGIAALKPGITPDQVWSQLRPFLVAIPAIIALATA AMVFIAWKLYQEFAWDILKNIGADYRMKKRFLHYQIYIALLKFDFFFFLGFIIQFVVIVAQKTDPEFALTIATIP VTICILLAAAYFTRRENKLGMMAVIILYLGGLIYFIFKLVRIYQPAYRLFYLPVRKSLTAFAVITILLILLTIAN AVICMGNFDKGLKAHLLTPRRMDEKPDAHSISLHDVKPQIPSRMTID* |
| Coding | >Ophcf2|02343 ATGCCCGCCCTCTTCCTCCAAGTTCCCACTGCTACCCCTTCCAGCGTCAACTACTGTGTCATCGCGCGCGCGACG CCACCGCCGGGGCCTTGGTTGAACGTTTCGTTCGCACTGTTCTCGGTACAACATCACGCGCCCGTTTCCCGCTCC GTTCTTGCGCCACCCTCATTCTCCTCCTTGGACCTCCTGTTTATTCATCATCGTCACTCTCATCAATCATCTCGT CTTCAGTCTCTCGTTCAGCCGGCACTCGCCCAGTCGCCCGTCCTGGCTACCAGGACGTCGTCTCTCGATTACAAC TCAAAGTACTCGCGCGAATTCGGACAGGCCTACCCGCAGCCCGCATACTCGCAGCCCGCCTACGCGGAGAATGCC AATCTGAACGCTGGCTTCGATCAGGGCTACGCCTATCGCCAGGGCCTGGCCTCTTCCAATCCGGCCAGGAGTGTC TACCGCGACAGGATGAGCTTCCTCAAGTCGAAATGGCCCGCCGCCTTCATGGCCGTCGCCAGTCTCCAGGCCATC GTTTGCCTGGCATTTGAGTCATTTGTCTTTGCTTCCTTCCAGTCGAGCCTCGGCCGTTATGACAACAAGCCCGAT GTTCAATCCCAGTACAAGACGATTCCCACCTTTTTGACCCTCATCATCTTTGGCTTCCTGTACGAGCTGGTCGTC GTCTGGGATGCGCTGCGAATGAAAAACACCATCCAGGTCATTGGCGTCTGCATCGCCAACCTGGCCCTGCTCGTC TACACCGCCATCCAGGTCGACCAGATCCAGATGGCCATCAGCACCCTCGGTATCGCCGCCTTGAAGCCCGGCATC ACCCCGGACCAGGTCTGGTCTCAGCTGAGGCCCTTCCTCGTCGCCATCCCTGCCATCATCGCCCTCGCCACCGCC GCCATGGTCTTCATCGCCTGGAAGCTCTACCAGGAGTTTGCCTGGGACATTCTCAAGAACATTGGCGCCGACTAT CGCATGAAGAAGCGCTTCCTCCATTATCAGATCTACATTGCCCTCCTCAAGTTCGACTTCTTCTTCTTCCTCGGC TTCATCATCCAATTCGTCGTCATCGTCGCCCAAAAGACCGATCCCGAGTTCGCCCTGACCATCGCCACCATCCCC GTCACCATCTGCATCCTCCTCGCCGCCGCCTACTTCACTCGCCGCGAGAACAAGCTCGGCATGATGGCCGTCATC ATCCTCTACCTCGGCGGCCTCATCTACTTCATCTTCAAGCTCGTCCGCATCTACCAGCCCGCCTACAGGCTCTTC TACCTGCCCGTCCGCAAGTCCCTAACCGCCTTTGCCGTCATCACCATCCTATTGATCCTCCTCACCATTGCAAAC GCCGTCATCTGCATGGGCAACTTTGACAAGGGGCTCAAGGCTCACCTGCTGACCCCCCGCCGGATGGACGAGAAG CCGGATGCACACTCCATCAGTCTGCACGACGTCAAGCCGCAGATTCCCAGCCGGATGACCATCGACTGA |
| Transcript | >Ophcf2|02343 ATGCCCGCCCTCTTCCTCCAAGTTCCCACTGCTACCCCTTCCAGCGTCAACTACTGTGTCATCGCGCGCGCGACG CCACCGCCGGGGCCTTGGTTGAACGTTTCGTTCGCACTGTTCTCGGTACAACATCACGCGCCCGTTTCCCGCTCC GTTCTTGCGCCACCCTCATTCTCCTCCTTGGACCTCCTGTTTATTCATCATCGTCACTCTCATCAATCATCTCGT CTTCAGTCTCTCGTTCAGCCGGCACTCGCCCAGTCGCCCGTCCTGGCTACCAGGACGTCGTCTCTCGATTACAAC TCAAAGTACTCGCGCGAATTCGGACAGGCCTACCCGCAGCCCGCATACTCGCAGCCCGCCTACGCGGAGAATGCC AATCTGAACGCTGGCTTCGATCAGGGCTACGCCTATCGCCAGGGCCTGGCCTCTTCCAATCCGGCCAGGAGTGTC TACCGCGACAGGATGAGCTTCCTCAAGTCGAAATGGCCCGCCGCCTTCATGGCCGTCGCCAGTCTCCAGGCCATC GTTTGCCTGGCATTTGAGTCATTTGTCTTTGCTTCCTTCCAGTCGAGCCTCGGCCGTTATGACAACAAGCCCGAT GTTCAATCCCAGTACAAGACGATTCCCACCTTTTTGACCCTCATCATCTTTGGCTTCCTGTACGAGCTGGTCGTC GTCTGGGATGCGCTGCGAATGAAAAACACCATCCAGGTCATTGGCGTCTGCATCGCCAACCTGGCCCTGCTCGTC TACACCGCCATCCAGGTCGACCAGATCCAGATGGCCATCAGCACCCTCGGTATCGCCGCCTTGAAGCCCGGCATC ACCCCGGACCAGGTCTGGTCTCAGCTGAGGCCCTTCCTCGTCGCCATCCCTGCCATCATCGCCCTCGCCACCGCC GCCATGGTCTTCATCGCCTGGAAGCTCTACCAGGAGTTTGCCTGGGACATTCTCAAGAACATTGGCGCCGACTAT CGCATGAAGAAGCGCTTCCTCCATTATCAGATCTACATTGCCCTCCTCAAGTTCGACTTCTTCTTCTTCCTCGGC TTCATCATCCAATTCGTCGTCATCGTCGCCCAAAAGACCGATCCCGAGTTCGCCCTGACCATCGCCACCATCCCC GTCACCATCTGCATCCTCCTCGCCGCCGCCTACTTCACTCGCCGCGAGAACAAGCTCGGCATGATGGCCGTCATC ATCCTCTACCTCGGCGGCCTCATCTACTTCATCTTCAAGCTCGTCCGCATCTACCAGCCCGCCTACAGGCTCTTC TACCTGCCCGTCCGCAAGTCCCTAACCGCCTTTGCCGTCATCACCATCCTATTGATCCTCCTCACCATTGCAAAC GCCGTCATCTGCATGGGCAACTTTGACAAGGGGCTCAAGGCTCACCTGCTGACCCCCCGCCGGATGGACGAGAAG CCGGATGCACACTCCATCAGTCTGCACGACGTCAAGCCGCAGATTCCCAGCCGGATGACCATCGACTGA |
| Gene | >Ophcf2|02343 ATGCCCGCCCTCTTCCTCCAAGTTCCCACTGCTGTAACCTCATTTCGCCCAGGGGTTCCCCTACCATCCATTCAT CCCCCGGCTCCCCCTTGGCCGTCGTCGTCGGTCTGATAGGCCGGTCCTTGCTCCACGTCCAGGTTACAGTGCGCG TAGACCCCTTCCAGCGTCAACTACTGTGTCATCGCGCGCGCGACGCCACCGCCGGGGCCTTGGTTGAACGTTTCG TTCGCACTGTTCTCGGTACAACATCACGCGCCCGTTTCCCGCTCCGTTCTTGCGCCACCCTCATTCTCCTCCTTG GACCTCCTGTTTATTCATCATCGTCACTCTCATCAATCATCTCGTCTTCAGTCTCTCGTTCAGCCGGCACGTCTG TCATCTATCGTTTTTTTTTTTTTTTTTTTCACTCGGGTCCGCTCCTCTGAGAATCTCCTCTGCTCCCTACCAGCT CTCGACTTCGCCACAACATCAAGATAAAAATAACCCACCGAGAGAGGGAAAAAAAAAAAAGCAAAGAAACAAGGC CCAGAAAAGAGCGCATTTCACCCCTTCACCCTTTCATTCTATCCCGCTCTCGCCCGCCATCGACGACGACGACGA CGACGACGACGACGACTACCGCAACGATTCCCAGACGTCGAATCTCCGCTGACTCCCGGTCGGAGTCGCCCAGTC GCCCGTCCTGGCTACCAGGTCAGACAGATTCCGCACCCCTTAGGCTCTCAAGGCCCTCTTCCCGCTCACCTTCTC AGCAGGACGTCGTCTCTCGATTACAACTCAAAGTACTCGCGCGAATTCGGACAGGCCTACCCGCAGCCCGCATAC TCGCAGCCCGCCTACGCGGAGAATGCCAATCTGAACGCTGGCTTCGATCAGGGCTACGCCTATCGCCAGGGCCTG GCCTCTTCCAATCCGGCCAGGAGTGTCTACCGCGACAGGATGAGCTTCCTCAAGTCGAAATGGCCCGCCGCCTTC ATGGCCGTCGCCAGTCTCCAGGCCATCGTTTGCCTGGCATTTGAGTCGTACGCCACCCGTCGTCACCCCCTTGGA CGCCCGCTTACCAGCTTGCAACAGATTTGTCTTTGCTTCCTTCCAGTCGAGCCTCGGCCGTTATGACAACAAGCC CGATGTTCAATCCCAGTACAAGACGATTCCCACCTTTTTGACCCTCATCATCTTTGGCTTCCTGTACGAGCTGGT CGTCGTCTGGGATGCGCTGCGAATGAAAAACACCATCCAGGTCATTGGCGTCTGCATCGCCAACCTGGCCCTGCT CGTCTACACCGCCATCCAGGTCGACCAGATCCAGATGGCCATCAGCACCCTCGGTATCGCCGCCTTGAAGCCCGG CATCACCCCGGACCAGGTCTGGTCTCAGCTGAGGCCCTTCCTCGTCGCCATCCCTGCCATCATCGCCCTCGCCAC CGCCGCCATGGTCTTCATCGCCTGGAAGCTCTACCAGGAGTTTGCCTGGGACATTCTCAAGAACATTGGCGCCGA CTATCGCATGAAGAAGCGCTTCCTCCATTATCAGGTTCGCCTCCCATACCCGTTTCGCCGTCACGTCACCGCCAA CGCAAAAAAGCTCACACCCCTCTTCTCAGATCTACATTGCCCTCCTCAAGTTCGACTTCTTCTTCTTCCTCGGCT TCATCATCCAATTCGTCGTCATCGTCGCCCAAAAGACCGATCCCGAGTTCGCCCTGACCATCGCCACCATCCCCG TCACCATCTGCATCCTCCTCGCCGCCGCCTACTTCACTCGCCGCGAGAACAAGCTCGGCATGATGGCCGTCATCA TCCTCTACCTCGGCGGCCTCATCTACTTCATCTTCAAGCTCGTCCGCATCTACCAGCCCGCCTACAGGCTCTTCT ACCTGCCCGTCCGCAAGTCCCTAACCGCCTTTGCCGTCATCACCATCCTATTGATCCTCCTCACCATTGCAAACG CCGTCATCTGCATGGGCAACTTTGACAAGGGGCTCAAGGCTCACCTGCTGACCCCCCGCCGGATGGACGAGAAGC CGGATGCACACTCCATCAGTCTGCACGACGTCAAGCCGCAGATTCCCAGCCGGATGACCATCGACTGA |