© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|02301 |
| Gene name | |
| Location | scaffold_02:3189277..3190041 |
| Strand | + |
| Gene length (bp) | 764 |
| Transcript length (bp) | 696 |
| Coding sequence length (bp) | 696 |
| Protein length (aa) | 232 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04588 | HIG_1_N | Hypoxia induced protein conserved region | 2.8E-05 | 139 | 162 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 62 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 116 | 135 | 19 |
| 3 | 145 | 167 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 122.37 | 68.68 | 176.06 |
| Alive | In ants, during behavior modification | 35.78 | 15.84 | 55.72 |
| Dead | In ants, recently dead | 43.87 | 20.51 | 67.23 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.351209 | no |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02301 MKVLSKEEEAAHFSVVLNGGIVGGIAGFGLGLGGVIFASRRYPAFRGLTLPFRTFLVTSSTTFGAIVNADRQSTR FQRAQHVDSDYRDASQRAAEMIRANESKYQSFMAWGREHRYSIVFASWVASMGVALTIVGRAPMSTPQKLVQARV YAQALTLAVLVVSAVFEMSDAKDGSGRWETVLVVDPNDPEHKHLIEKKVHKEDYEGQDMWKDMVEAEEQRLKAKE RKATKS* |
| Coding | >Ophcf2|02301 ATGAAAGTGCTCAGCAAGGAAGAAGAGGCGGCGCACTTTTCCGTCGTTCTCAACGGTGGTATCGTCGGCGGTATC GCTGGCTTCGGTCTCGGGCTCGGTGGCGTCATCTTCGCCTCTCGTCGGTATCCGGCTTTTCGCGGCCTGACGCTT CCGTTTCGCACTTTTCTCGTCACTTCGAGTACGACGTTTGGCGCCATTGTCAACGCTGATCGGCAGAGCACTCGC TTCCAGCGCGCCCAGCATGTCGATAGCGACTATCGGGATGCCAGCCAGCGTGCTGCCGAGATGATTCGCGCCAAC GAGTCCAAGTATCAGAGCTTCATGGCCTGGGGCCGCGAGCATCGCTACTCTATTGTCTTCGCTTCCTGGGTCGCT AGCATGGGCGTCGCTCTGACAATTGTCGGCCGCGCCCCAATGTCTACGCCCCAGAAGCTCGTCCAGGCTCGTGTG TACGCTCAGGCGCTGACGCTCGCCGTCCTTGTGGTCTCTGCCGTCTTCGAGATGTCCGACGCCAAAGACGGCAGT GGCCGTTGGGAGACGGTTCTCGTTGTCGATCCCAACGACCCGGAGCACAAGCACCTCATCGAGAAGAAGGTGCAC AAGGAGGATTACGAGGGCCAGGACATGTGGAAGGACATGGTCGAGGCCGAGGAGCAACGGCTCAAGGCCAAAGAG CGCAAAGCTACCAAGTCCTAG |
| Transcript | >Ophcf2|02301 ATGAAAGTGCTCAGCAAGGAAGAAGAGGCGGCGCACTTTTCCGTCGTTCTCAACGGTGGTATCGTCGGCGGTATC GCTGGCTTCGGTCTCGGGCTCGGTGGCGTCATCTTCGCCTCTCGTCGGTATCCGGCTTTTCGCGGCCTGACGCTT CCGTTTCGCACTTTTCTCGTCACTTCGAGTACGACGTTTGGCGCCATTGTCAACGCTGATCGGCAGAGCACTCGC TTCCAGCGCGCCCAGCATGTCGATAGCGACTATCGGGATGCCAGCCAGCGTGCTGCCGAGATGATTCGCGCCAAC GAGTCCAAGTATCAGAGCTTCATGGCCTGGGGCCGCGAGCATCGCTACTCTATTGTCTTCGCTTCCTGGGTCGCT AGCATGGGCGTCGCTCTGACAATTGTCGGCCGCGCCCCAATGTCTACGCCCCAGAAGCTCGTCCAGGCTCGTGTG TACGCTCAGGCGCTGACGCTCGCCGTCCTTGTGGTCTCTGCCGTCTTCGAGATGTCCGACGCCAAAGACGGCAGT GGCCGTTGGGAGACGGTTCTCGTTGTCGATCCCAACGACCCGGAGCACAAGCACCTCATCGAGAAGAAGGTGCAC AAGGAGGATTACGAGGGCCAGGACATGTGGAAGGACATGGTCGAGGCCGAGGAGCAACGGCTCAAGGCCAAAGAG CGCAAAGCTACCAAGTCCTAG |
| Gene | >Ophcf2|02301 ATGAAAGTGCTCAGCAAGGAAGAAGAGGCGGCGCACTTTTCCGTCGTTCTCAACGGTGGTATCGTCGGCGGTATC GCTGGCTTCGGTCTCGGGCTCGGTGGCGTCATCTTCGCCTCTCGTCGGTATCCGGCTTTTCGCGGCCTGACGCTT CCGTTTCGCACTTTTCTCGTCACTTCGAGTACGACGTTTGGCGCCATTGTCAACGCTGATCGGCAGAGCACTCGC TTCCAGCGCGCCCAGCATGTCGATAGCGACTATCGGGATGCCAGCCAGCGTGCTGCCGAGATGATTCGCGCCAAC GAGTCCAAGTATCAGAGCTTCATGGCCTGGGGCCGCGAGCATCGCTACTCTATTGTCTTCGCTTCCTGGGTCGCT AGCATGGGCGTCGCTCTGACAATTGTCGGCCGCGCCCCAATGTCTACGCCCCAGAAGCTCGTCCAGGCTCGTGTG TACGCTCAGGCGCTGACGCTCGCCGTCCTTGTGGTCTCTGCCGTCTTCGAGATGTCCGACGCCAAAGACGGCAGT GGCCGTTGGGAGACGGTTCTCGTTGTCGATCCCAACGACCCGGAGCACAAGCACCTCATCGAGAAGAAGGTGCAC AAGGAGGATTACGAGGGCCAGGACATGTGGAAGGGTACGACTGCCTGCACATCGTTCACCAGTTGTCTTCTTCTG AGTGGCCCCTATGCTGACTTGTCCCAGACATGGTCGAGGCCGAGGAGCAACGGCTCAAGGCCAAAGAGCGCAAAG CTACCAAGTCCTAG |