© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02286 |
| Gene name | |
| Location | scaffold_02:3141866..3142562 |
| Strand | + |
| Gene length (bp) | 696 |
| Transcript length (bp) | 696 |
| Coding sequence length (bp) | 696 |
| Protein length (aa) | 232 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08510 | PIG-P | PIG-P | 4.5E-54 | 85 | 223 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 88 | 107 | 19 |
| 2 | 127 | 149 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 28.47 | 11.88 | 45.06 |
| Alive | In ants, during behavior modification | 15.01 | 4.94 | 25.08 |
| Dead | In ants, recently dead | 16.18 | 5.19 | 27.17 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.019223 | yes |
| Alive | Dead | 0.814057 | no |
| Dead | Fungus | 0.043909 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02286 MSVSSEEKDEYLSDGQSSDSSGHEWPARPLSQTYFAPPFYGRPPTPLPPSPSLTSLLRPSRPTTPDASDDDNMAP VPRASPQVPTYEYYGFVLYLFSSLTFLLWLLWSYLPAPFLHGLGIYYYPNRWWALAIPAFITMTLCYIYVALASY NTEILTLPMASVETIVDGAGKLAVIDAKGRLRGSSKRERKCDSNGRLRWREVWNEGTDAVMDIPLAGVCEVLYGD GREEHA* |
| Coding | >Ophcf2|02286 ATGTCGGTCTCATCGGAAGAGAAAGACGAGTACCTGTCGGACGGCCAATCTTCCGACTCGTCGGGCCACGAATGG CCGGCACGTCCCCTGTCACAGACCTACTTTGCGCCGCCCTTCTATGGCCGACCACCGACGCCGCTGCCCCCTTCG CCGTCATTGACGTCACTCCTTCGACCGTCGCGTCCGACGACGCCAGATGCCTCGGACGACGATAACATGGCGCCG GTGCCCCGCGCGTCGCCCCAGGTGCCGACGTACGAGTACTACGGCTTCGTGCTGTACCTCTTCAGCAGCTTGACC TTTCTTCTCTGGCTTCTATGGAGCTACCTGCCGGCGCCCTTCTTGCACGGCCTGGGCATCTACTACTACCCGAAC CGATGGTGGGCGCTTGCCATCCCGGCCTTTATAACCATGACGCTGTGCTACATCTACGTGGCGCTGGCCTCTTAC AACACGGAGATTCTGACGCTTCCTATGGCCAGCGTGGAGACAATCGTCGACGGTGCGGGAAAGCTGGCTGTCATC GATGCCAAGGGCCGGCTTCGTGGCAGCAGCAAGAGAGAGAGGAAGTGTGACAGCAACGGACGCCTGAGATGGAGG GAGGTCTGGAACGAGGGTACTGATGCCGTGATGGACATTCCTCTTGCGGGAGTGTGCGAGGTTCTTTACGGAGAC GGGCGCGAAGAACACGCCTGA |
| Transcript | >Ophcf2|02286 ATGTCGGTCTCATCGGAAGAGAAAGACGAGTACCTGTCGGACGGCCAATCTTCCGACTCGTCGGGCCACGAATGG CCGGCACGTCCCCTGTCACAGACCTACTTTGCGCCGCCCTTCTATGGCCGACCACCGACGCCGCTGCCCCCTTCG CCGTCATTGACGTCACTCCTTCGACCGTCGCGTCCGACGACGCCAGATGCCTCGGACGACGATAACATGGCGCCG GTGCCCCGCGCGTCGCCCCAGGTGCCGACGTACGAGTACTACGGCTTCGTGCTGTACCTCTTCAGCAGCTTGACC TTTCTTCTCTGGCTTCTATGGAGCTACCTGCCGGCGCCCTTCTTGCACGGCCTGGGCATCTACTACTACCCGAAC CGATGGTGGGCGCTTGCCATCCCGGCCTTTATAACCATGACGCTGTGCTACATCTACGTGGCGCTGGCCTCTTAC AACACGGAGATTCTGACGCTTCCTATGGCCAGCGTGGAGACAATCGTCGACGGTGCGGGAAAGCTGGCTGTCATC GATGCCAAGGGCCGGCTTCGTGGCAGCAGCAAGAGAGAGAGGAAGTGTGACAGCAACGGACGCCTGAGATGGAGG GAGGTCTGGAACGAGGGTACTGATGCCGTGATGGACATTCCTCTTGCGGGAGTGTGCGAGGTTCTTTACGGAGAC GGGCGCGAAGAACACGCCTGA |
| Gene | >Ophcf2|02286 ATGTCGGTCTCATCGGAAGAGAAAGACGAGTACCTGTCGGACGGCCAATCTTCCGACTCGTCGGGCCACGAATGG CCGGCACGTCCCCTGTCACAGACCTACTTTGCGCCGCCCTTCTATGGCCGACCACCGACGCCGCTGCCCCCTTCG CCGTCATTGACGTCACTCCTTCGACCGTCGCGTCCGACGACGCCAGATGCCTCGGACGACGATAACATGGCGCCG GTGCCCCGCGCGTCGCCCCAGGTGCCGACGTACGAGTACTACGGCTTCGTGCTGTACCTCTTCAGCAGCTTGACC TTTCTTCTCTGGCTTCTATGGAGCTACCTGCCGGCGCCCTTCTTGCACGGCCTGGGCATCTACTACTACCCGAAC CGATGGTGGGCGCTTGCCATCCCGGCCTTTATAACCATGACGCTGTGCTACATCTACGTGGCGCTGGCCTCTTAC AACACGGAGATTCTGACGCTTCCTATGGCCAGCGTGGAGACAATCGTCGACGGTGCGGGAAAGCTGGCTGTCATC GATGCCAAGGGCCGGCTTCGTGGCAGCAGCAAGAGAGAGAGGAAGTGTGACAGCAACGGACGCCTGAGATGGAGG GAGGTCTGGAACGAGGGTACTGATGCCGTGATGGACATTCCTCTTGCGGGAGTGTGCGAGGTTCTTTACGGAGAC GGGCGCGAAGAACACGCCTGA |