© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02285 |
| Gene name | |
| Location | scaffold_02:3140541..3141463 |
| Strand | + |
| Gene length (bp) | 922 |
| Transcript length (bp) | 810 |
| Coding sequence length (bp) | 810 |
| Protein length (aa) | 270 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1158 | 0.124 | 0.1049 | 0.6826 | 0.0771 | 0.0046 | 0.2053 | 0.6149 | 0.2718 | 0.0035 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 25 | 47 | 22 |
| 2 | 88 | 110 | 22 |
| 3 | 123 | 145 | 22 |
| 4 | 179 | 201 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 45.93 | 22.78 | 69.09 |
| Alive | In ants, during behavior modification | 273.13 | 146.72 | 399.53 |
| Dead | In ants, recently dead | 195.35 | 111.02 | 279.68 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.043820 | yes |
| Dead | Fungus | 0.000238 | yes |
| Orthofinder run ID | 4 |
| Orthogroup | 2767 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02285 MKVLLGKNRSYRLMPRAWPRTQRRLLAWLMPVELAMLVPVLVIFGIAQPDLYRTAMWRIGFENKLNSNPNMVLYA YANHRPLPDIPFIWSSTLTSFNVAISIVSLFFLLIKLIAHIMKTWYPVFAVFINAALAVLYAVSVYGQVGPDYAD ARYHTPAVWYLRQGCGLAKEYGKYQACQIAQASLAVTLLLLIVYLVNLGIALHAMFPNEENNVSKDDDEDAATLD SKERGAWEMHNMKAPISTPYTPRTQAFYTLDRQLPLRQPDQSYA* |
| Coding | >Ophcf2|02285 ATGAAGGTCCTCCTCGGCAAAAACCGCTCCTACCGGCTGATGCCGCGAGCCTGGCCCCGAACGCAGAGACGCCTC CTCGCATGGCTCATGCCTGTCGAACTTGCAATGCTGGTGCCCGTCCTCGTCATCTTCGGCATCGCACAGCCCGAC CTATATCGCACCGCCATGTGGCGTATCGGCTTCGAGAATAAGCTCAACTCCAACCCCAACATGGTTCTCTACGCC TACGCCAACCATCGGCCTCTTCCGGATATACCCTTCATCTGGTCTTCGACTCTGACAAGCTTCAACGTTGCCATC TCCATCGTTTCTCTCTTCTTCCTCTTGATCAAGCTCATTGCGCACATTATGAAGACGTGGTACCCCGTCTTTGCC GTCTTCATCAATGCCGCCCTGGCCGTCTTATACGCCGTTAGCGTCTACGGACAGGTCGGGCCCGACTACGCCGAC GCCCGCTATCACACGCCGGCCGTATGGTACTTGCGCCAGGGATGCGGCCTTGCCAAAGAATATGGCAAGTATCAG GCTTGTCAAATCGCCCAGGCTTCCCTCGCCGTCACTCTTCTCTTGCTTATCGTGTATCTGGTCAACTTGGGAATC GCCCTACATGCCATGTTTCCAAACGAGGAAAACAATGTAAGCAAGGATGATGATGAGGACGCCGCCACGCTCGAT TCGAAAGAGAGGGGTGCCTGGGAGATGCATAACATGAAGGCTCCCATCAGCACGCCATACACGCCCAGGACCCAG GCATTTTATACTCTCGACCGGCAGCTACCACTACGGCAGCCAGACCAGTCATACGCTTGA |
| Transcript | >Ophcf2|02285 ATGAAGGTCCTCCTCGGCAAAAACCGCTCCTACCGGCTGATGCCGCGAGCCTGGCCCCGAACGCAGAGACGCCTC CTCGCATGGCTCATGCCTGTCGAACTTGCAATGCTGGTGCCCGTCCTCGTCATCTTCGGCATCGCACAGCCCGAC CTATATCGCACCGCCATGTGGCGTATCGGCTTCGAGAATAAGCTCAACTCCAACCCCAACATGGTTCTCTACGCC TACGCCAACCATCGGCCTCTTCCGGATATACCCTTCATCTGGTCTTCGACTCTGACAAGCTTCAACGTTGCCATC TCCATCGTTTCTCTCTTCTTCCTCTTGATCAAGCTCATTGCGCACATTATGAAGACGTGGTACCCCGTCTTTGCC GTCTTCATCAATGCCGCCCTGGCCGTCTTATACGCCGTTAGCGTCTACGGACAGGTCGGGCCCGACTACGCCGAC GCCCGCTATCACACGCCGGCCGTATGGTACTTGCGCCAGGGATGCGGCCTTGCCAAAGAATATGGCAAGTATCAG GCTTGTCAAATCGCCCAGGCTTCCCTCGCCGTCACTCTTCTCTTGCTTATCGTGTATCTGGTCAACTTGGGAATC GCCCTACATGCCATGTTTCCAAACGAGGAAAACAATGTAAGCAAGGATGATGATGAGGACGCCGCCACGCTCGAT TCGAAAGAGAGGGGTGCCTGGGAGATGCATAACATGAAGGCTCCCATCAGCACGCCATACACGCCCAGGACCCAG GCATTTTATACTCTCGACCGGCAGCTACCACTACGGCAGCCAGACCAGTCATACGCTTGA |
| Gene | >Ophcf2|02285 ATGAAGGTCCTCCTCGGCAAAAACCGCTCCTACCGGCTGATGCCGCGAGCCTGGCCCCGAACGCAGAGACGCCTC CTCGCATGGCTCATGCCTGTCGAACTTGCAATGCTGGTGCCCGTCCTCGTCATCTTCGGCATCGCACAGCCCGAC CTATATCGCACCGCCATGTGGCGTATCGGCTTCGAGAATAAGCTCAACTCCAACCCCAACATGGTTCTCTACGCC TACGCCAACCATCGGCCTCTTCCGGATATACCCTTCATCTGGTCTTCGACGTGGGTCTCTGTCACTCTGATTCTA GCACGCTCCCGACGCTAACATGACGCGCCAGTCTGACAAGCTTCAACGTTGCCATCTCCATCGTTTCTCTCTTCT TCCTCTTGATCAAGCTCATTGCGCACATTATGAAGACGTGGTACCCCGTCTTTGCCGTCTTCATCAATGCCGCCC TGGCCGTCTTATACGCCGTTAGCGTCTACGGACAGGTCGGGCCCGACTACGCCGACGCCCGCTATCACACGCCGG CCGTATGGTACTTGCGCCAGGGATGCGGCCTTGCCAAAGAATATGGCAAGTATCAGGCTTGTCAAATCGCCCAGG CTTCCCTCGCCGTCACTCTTCTCTTGCTGTGGGTTTCTCGCCTGCTGGCATGACCTCAATTCGTGCGCTGACGTG TTGCTTTAGTATCGTGTATCTGGTCAACTTGGGAATCGCCCTACATGCCATGTTTCCAAACGAGGAAAACAATGT AAGCAAGGATGATGATGAGGACGCCGCCACGCTCGATTCGAAAGAGAGGGGTGCCTGGGAGATGCATAACATGAA GGCTCCCATCAGCACGCCATACACGCCCAGGACCCAGGCATTTTATACTCTCGACCGGCAGCTACCACTACGGCA GCCAGACCAGTCATACGCTTGA |