Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|02280
Gene name
Locationscaffold_02:3122682..3123081
Strand+
Gene length (bp)399
Transcript length (bp)288
Coding sequence length (bp)288
Protein length (aa) 96

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05347 Complex1_LYR Complex 1 protein (LYR family) 3.0E-17 30 85
PF13233 Complex1_LYR_2 Complex1_LYR-like 1.5E-06 31 91

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Mitochondrion Mitochondrial transit peptide 0.245 0.1086 0.0331 0.1108 0.969 0.0585 0.0266 0.0303 0.0267 0.0064

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Orthologs

Orthofinder run ID4
Orthogroup5248
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|768
Ophiocordyceps australis map64 (Brazil) OphauB2|4389
Ophiocordyceps camponoti-floridani Ophcf2|02280 (this protein)
Ophiocordyceps kimflemingae Ophio5|5099
Ophiocordyceps subramaniannii Hirsu2|4413

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|02280
MRPSVATALRNATRPNHPIPTLQHFLQRARVLALYRAIMRATGRIADARTRAETRSHVRHEFERYRHVDDLSHIR
YLLSTGKTQWDSMERYIDGL*
Coding >Ophcf2|02280
ATGAGGCCCTCCGTCGCCACAGCCCTCCGAAACGCCACGCGTCCAAACCACCCCATACCAACCCTCCAGCACTTC
CTACAACGAGCCCGCGTCCTGGCTCTGTACCGCGCCATCATGAGGGCTACGGGCCGCATCGCTGATGCGCGGACC
AGGGCAGAGACGCGTAGCCATGTGCGTCATGAGTTTGAGCGGTACCGTCATGTTGACGATCTTTCGCATATACGA
TATCTCCTGTCGACGGGAAAGACGCAGTGGGACAGCATGGAGAGGTATATAGACGGCTTGTAG
Transcript >Ophcf2|02280
ATGAGGCCCTCCGTCGCCACAGCCCTCCGAAACGCCACGCGTCCAAACCACCCCATACCAACCCTCCAGCACTTC
CTACAACGAGCCCGCGTCCTGGCTCTGTACCGCGCCATCATGAGGGCTACGGGCCGCATCGCTGATGCGCGGACC
AGGGCAGAGACGCGTAGCCATGTGCGTCATGAGTTTGAGCGGTACCGTCATGTTGACGATCTTTCGCATATACGA
TATCTCCTGTCGACGGGAAAGACGCAGTGGGACAGCATGGAGAGGTATATAGACGGCTTGTAG
Gene >Ophcf2|02280
ATGAGGCCCTCCGTCGCCACAGCCCTCCGAAACGCCACGCGTCCAAACCACCCCATACCAACCCTCCAGCACGTA
CAATTCACCGACTCCACCCTTCCCGTACCCCCCCTGACGCGCAAACACCCCAGTTCCTACAACGAGCCCGCGTCC
TGGCTCTGTACCGCGCCATCATGAGGGCTACGGGCCGCATCGCTGATGCGCGGACCAGGGCAGAGACGCGTAGCC
ATGTGCGTCATGAGTTTGAGCGGTACCGTCATGTTGACGATCTTGTACGTTGCGTCTTGATCACCTCTCCCTTTT
GGAATCTCGTTGACCGGGATCAAGTCGCATATACGATATCTCCTGTCGACGGGAAAGACGCAGTGGGACAGCATG
GAGAGGTATATAGACGGCTTGTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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