Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|02196
Gene name
Locationscaffold_02:2880214..2881252
Strand-
Gene length (bp)1038
Transcript length (bp)1038
Coding sequence length (bp)1038
Protein length (aa) 346

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07766 LETM1_RBD LETM1-like, RBD 1.5E-08 252 312

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

Domain # Start End Length
1 149 171 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|02196
MAMSHRLAWRRCALLGDQGSVRGCAYPALSRPAPLGVIQLSRQLGQSKTIKPGKANPPESTLPPPLEVASRDECE
SKMHYLIQLGKGYVRFYKNGIKAIWTNRKLLRKKLDRMPGSERPSILFPPWDVPATFTRADWVLLWRVRHDLMRL
PIFGLMLLIIGEFTALVVIYVDRVVPYTCRIPKQARNAVERSENRRRDAFRQLQVRYRNGALSPDMTPAVARRHI
LRSLDIAGNMWDRLGFIPPGMWQVKGQSRMKFLEGDDQCLVDEGDSLELSAVELSTACRERGIDTLGKKDSELKA
LLSQWLRLTRADNPAERRRRMAVLMLTRPEEWPQKRDFTVPDWEL*
Coding >Ophcf2|02196
ATGGCCATGAGCCACCGACTCGCCTGGAGGCGCTGTGCGCTACTCGGCGACCAAGGCAGCGTCAGGGGCTGCGCA
TATCCAGCCCTCTCAAGGCCAGCGCCCTTGGGCGTCATACAACTATCGAGACAACTCGGCCAATCCAAAACAATC
AAACCAGGCAAGGCCAATCCGCCAGAGTCCACACTCCCGCCGCCTCTGGAAGTGGCGTCGCGGGACGAGTGCGAG
TCGAAGATGCACTACCTCATCCAGCTGGGCAAGGGCTACGTTCGCTTCTACAAGAACGGGATTAAAGCCATCTGG
ACGAACCGCAAGCTGCTGCGCAAGAAGCTGGACAGAATGCCGGGCAGCGAGCGGCCTTCGATCCTGTTTCCGCCG
TGGGACGTGCCGGCGACGTTTACGCGCGCTGACTGGGTGCTCTTGTGGCGTGTGCGGCATGATCTCATGCGGCTG
CCCATCTTCGGACTCATGCTCCTCATCATCGGCGAGTTCACGGCGCTGGTGGTAATATATGTCGATAGGGTGGTC
CCCTACACGTGCCGGATACCGAAGCAGGCCCGCAACGCGGTGGAGCGGTCCGAGAACCGGCGACGGGACGCCTTT
CGACAGCTTCAAGTACGGTACCGGAACGGCGCGCTCAGCCCCGACATGACGCCGGCCGTGGCCCGGAGACACATC
CTCCGCAGCCTTGACATTGCCGGCAACATGTGGGATCGGCTGGGGTTCATACCGCCGGGCATGTGGCAGGTCAAG
GGCCAGTCGCGCATGAAGTTCCTCGAGGGCGACGACCAGTGTCTCGTCGACGAAGGCGACTCGTTGGAGCTCAGC
GCGGTGGAGCTTTCCACGGCCTGTCGTGAGCGGGGGATCGATACGCTCGGCAAGAAGGACAGCGAACTCAAAGCC
TTACTCTCGCAGTGGCTCCGCCTGACGAGAGCCGATAACCCGGCCGAGAGGCGGCGTCGGATGGCGGTGCTGATG
CTGACCAGGCCAGAAGAGTGGCCGCAGAAGAGGGACTTTACGGTGCCGGACTGGGAGCTGTAG
Transcript >Ophcf2|02196
ATGGCCATGAGCCACCGACTCGCCTGGAGGCGCTGTGCGCTACTCGGCGACCAAGGCAGCGTCAGGGGCTGCGCA
TATCCAGCCCTCTCAAGGCCAGCGCCCTTGGGCGTCATACAACTATCGAGACAACTCGGCCAATCCAAAACAATC
AAACCAGGCAAGGCCAATCCGCCAGAGTCCACACTCCCGCCGCCTCTGGAAGTGGCGTCGCGGGACGAGTGCGAG
TCGAAGATGCACTACCTCATCCAGCTGGGCAAGGGCTACGTTCGCTTCTACAAGAACGGGATTAAAGCCATCTGG
ACGAACCGCAAGCTGCTGCGCAAGAAGCTGGACAGAATGCCGGGCAGCGAGCGGCCTTCGATCCTGTTTCCGCCG
TGGGACGTGCCGGCGACGTTTACGCGCGCTGACTGGGTGCTCTTGTGGCGTGTGCGGCATGATCTCATGCGGCTG
CCCATCTTCGGACTCATGCTCCTCATCATCGGCGAGTTCACGGCGCTGGTGGTAATATATGTCGATAGGGTGGTC
CCCTACACGTGCCGGATACCGAAGCAGGCCCGCAACGCGGTGGAGCGGTCCGAGAACCGGCGACGGGACGCCTTT
CGACAGCTTCAAGTACGGTACCGGAACGGCGCGCTCAGCCCCGACATGACGCCGGCCGTGGCCCGGAGACACATC
CTCCGCAGCCTTGACATTGCCGGCAACATGTGGGATCGGCTGGGGTTCATACCGCCGGGCATGTGGCAGGTCAAG
GGCCAGTCGCGCATGAAGTTCCTCGAGGGCGACGACCAGTGTCTCGTCGACGAAGGCGACTCGTTGGAGCTCAGC
GCGGTGGAGCTTTCCACGGCCTGTCGTGAGCGGGGGATCGATACGCTCGGCAAGAAGGACAGCGAACTCAAAGCC
TTACTCTCGCAGTGGCTCCGCCTGACGAGAGCCGATAACCCGGCCGAGAGGCGGCGTCGGATGGCGGTGCTGATG
CTGACCAGGCCAGAAGAGTGGCCGCAGAAGAGGGACTTTACGGTGCCGGACTGGGAGCTGTAG
Gene >Ophcf2|02196
ATGGCCATGAGCCACCGACTCGCCTGGAGGCGCTGTGCGCTACTCGGCGACCAAGGCAGCGTCAGGGGCTGCGCA
TATCCAGCCCTCTCAAGGCCAGCGCCCTTGGGCGTCATACAACTATCGAGACAACTCGGCCAATCCAAAACAATC
AAACCAGGCAAGGCCAATCCGCCAGAGTCCACACTCCCGCCGCCTCTGGAAGTGGCGTCGCGGGACGAGTGCGAG
TCGAAGATGCACTACCTCATCCAGCTGGGCAAGGGCTACGTTCGCTTCTACAAGAACGGGATTAAAGCCATCTGG
ACGAACCGCAAGCTGCTGCGCAAGAAGCTGGACAGAATGCCGGGCAGCGAGCGGCCTTCGATCCTGTTTCCGCCG
TGGGACGTGCCGGCGACGTTTACGCGCGCTGACTGGGTGCTCTTGTGGCGTGTGCGGCATGATCTCATGCGGCTG
CCCATCTTCGGACTCATGCTCCTCATCATCGGCGAGTTCACGGCGCTGGTGGTAATATATGTCGATAGGGTGGTC
CCCTACACGTGCCGGATACCGAAGCAGGCCCGCAACGCGGTGGAGCGGTCCGAGAACCGGCGACGGGACGCCTTT
CGACAGCTTCAAGTACGGTACCGGAACGGCGCGCTCAGCCCCGACATGACGCCGGCCGTGGCCCGGAGACACATC
CTCCGCAGCCTTGACATTGCCGGCAACATGTGGGATCGGCTGGGGTTCATACCGCCGGGCATGTGGCAGGTCAAG
GGCCAGTCGCGCATGAAGTTCCTCGAGGGCGACGACCAGTGTCTCGTCGACGAAGGCGACTCGTTGGAGCTCAGC
GCGGTGGAGCTTTCCACGGCCTGTCGTGAGCGGGGGATCGATACGCTCGGCAAGAAGGACAGCGAACTCAAAGCC
TTACTCTCGCAGTGGCTCCGCCTGACGAGAGCCGATAACCCGGCCGAGAGGCGGCGTCGGATGGCGGTGCTGATG
CTGACCAGGCCAGAAGAGTGGCCGCAGAAGAGGGACTTTACGGTGCCGGACTGGGAGCTGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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