Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|02184
Gene name
Location	scaffold_02:2853233..2853790
Strand	-
Gene length (bp)	557
Transcript length (bp)	465
Coding sequence length (bp)	465
Protein length (aa)	155

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01284	MARVEL	Membrane-associating domain	1.2E-15	9	136

GO

GO Term	Description	Terminal node
GO:0016020	membrane	Yes
GO:0005575	cellular_component	No
GO:0110165	cellular anatomical entity	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 21	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	7	29	22
2	44	66	22
3	79	101	22
4	121	143	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|02184 MSALDRIVSLLLRAAEVVFAVIVAAVIGYYLHHSQGAGSWSLARFIYTEVVAGLSILLGLLWLLPFARTFSHWPM DIFISLLWWAAFGVLVNLVGSSCGAIFNWQNVSPTGDQCGRFKAGIAFAFLSAIVWLASALVGLFWTGRHERRVR NSRV*
Coding	>Ophcf2\|02184 ATGTCGGCACTCGACCGCATCGTCAGCCTTCTCCTCCGGGCGGCCGAGGTGGTCTTTGCCGTCATCGTCGCCGCC GTCATTGGCTACTACCTACACCACAGCCAGGGCGCGGGATCGTGGAGCCTGGCGCGTTTCATCTACACCGAGGTG GTGGCGGGTTTGTCGATCCTGCTGGGCCTGCTATGGCTTCTGCCCTTTGCCAGGACCTTTTCGCACTGGCCGATG GACATCTTCATCAGTCTGCTGTGGTGGGCGGCCTTTGGGGTCTTGGTGAATCTCGTCGGCTCTTCTTGCGGCGCC ATCTTCAACTGGCAAAACGTCTCCCCCACCGGCGATCAGTGCGGGCGCTTCAAGGCCGGTATCGCCTTTGCCTTC CTGTCCGCTATTGTCTGGTTGGCCTCAGCCCTGGTGGGACTGTTCTGGACCGGGCGCCATGAGCGGCGCGTGCGG AACAGCAGGGTTTAG
Transcript	>Ophcf2\|02184 ATGTCGGCACTCGACCGCATCGTCAGCCTTCTCCTCCGGGCGGCCGAGGTGGTCTTTGCCGTCATCGTCGCCGCC GTCATTGGCTACTACCTACACCACAGCCAGGGCGCGGGATCGTGGAGCCTGGCGCGTTTCATCTACACCGAGGTG GTGGCGGGTTTGTCGATCCTGCTGGGCCTGCTATGGCTTCTGCCCTTTGCCAGGACCTTTTCGCACTGGCCGATG GACATCTTCATCAGTCTGCTGTGGTGGGCGGCCTTTGGGGTCTTGGTGAATCTCGTCGGCTCTTCTTGCGGCGCC ATCTTCAACTGGCAAAACGTCTCCCCCACCGGCGATCAGTGCGGGCGCTTCAAGGCCGGTATCGCCTTTGCCTTC CTGTCCGCTATTGTCTGGTTGGCCTCAGCCCTGGTGGGACTGTTCTGGACCGGGCGCCATGAGCGGCGCGTGCGG AACAGCAGGGTTTAG
Gene	>Ophcf2\|02184 ATGTCGGCACTCGACCGCATCGTCAGCCTTCTCCTCCGGGCGGCCGAGGTGGTCTTTGCCGTCATCGTCGCCGCC GTCATTGGCTACTACCTACACCACAGCCAGGGCGCGGGATCGTGGAGCCTGGCGCGTTTCATCTACACCGAGGTG GTGGCGGGTTTGTCGATCCTGCTGGGCCTGCTATGGCTTCTGCCCTTTGCCAGGACCTTTTCGCACTGGCCGATG GACATCTTCATCAGTCTGCTGTGGTGGGCGGCCTTTGGGGTCTTGGTGAATGTCGGTGATGGCTTTCCATTCATT ATCTTTTGCCTTCTGCGTGCGGATGGTGATGATGACGATGCCGATGCTGACCATGATGCTCCCTACAGCTCGTCG GCTCTTCTTGCGGCGCCATCTTCAACTGGCAAAACGTCTCCCCCACCGGCGATCAGTGCGGGCGCTTCAAGGCCG GTATCGCCTTTGCCTTCCTGTCCGCTATTGTCTGGTTGGCCTCAGCCCTGGTGGGACTGTTCTGGACCGGGCGCC ATGAGCGGCGCGTGCGGAACAGCAGGGTTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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