Protein ID | Ophcf2|02176 |
Gene name | |
Location | scaffold_02:2831994..2833504 |
Strand | - |
Gene length (bp) | 1510 |
Transcript length (bp) | 1446 |
Coding sequence length (bp) | 1446 |
Protein length (aa) | 482 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 41 | 0.5 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 42 | 64 | 22 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
Fungus | Fungus in pure culture | 21.52 | 10.63 | 32.40 |
Alive | In ants, during behavior modification | 17.06 | 7.96 | 26.15 |
Dead | In ants, recently dead | 18.06 | 8.56 | 27.55 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
Alive | Fungus | 0.336088 | no |
Alive | Dead | 0.820165 | no |
Dead | Fungus | 0.469484 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|02176 MPNSPAIPPCTGKVPSLRPDIIHNHYYTTNPKALPWYRRKPFFWTAIAVLVFIVVAAAVSLGVVLKLELGKSRMR VDHQTSSSPPATDQNTSSLQTMQPSQTRTSDTSSGAMSSTAGVSSKSSSPSSTTSTETAAATPSVIFTVSEKSRL ASVYVEDEQANLHRRFLAWQDDKGHLIVTEWSAGNRSHYRIRDQLRSRIPDAKLGSPLAMAASPSGVVHLFFLDT QDALSHVFRSATGVWETRTLRKGNGPVIASGPSPLSTAWHRTGDGTEVLAIAYANSQDLRLAMTDGPTAESPWLV SNVVSLPGPVPGQLQEPCFAVAGDWRNAMGARTMLMAVLMEDGLFAYECPIEMWPPGSKTPCRQLNDTFRDDKDR DVSFVPPPKQLGWIRLDGHHSAGYDFSLVGLGEDGFISENRIGADEARRAGHGLETRMAARAISATDEAVLFAAA GDDIYMYRLDVDSGTWRAEGSLQLTSRGRTA* |
Coding | >Ophcf2|02176 ATGCCAAACTCACCCGCGATCCCGCCTTGTACGGGAAAAGTCCCGTCGCTCCGTCCCGACATCATCCACAACCAC TATTACACGACGAATCCCAAGGCATTGCCCTGGTACCGTCGCAAGCCTTTCTTCTGGACCGCCATCGCAGTCCTC GTCTTTATCGTCGTCGCAGCCGCCGTCAGTCTCGGCGTCGTTCTCAAGCTCGAGCTCGGAAAGAGCCGGATGCGC GTTGACCATCAGACAAGTTCCTCCCCGCCTGCGACGGATCAGAACACGTCGTCTTTGCAGACGATGCAGCCTTCT CAGACTCGGACATCAGACACGTCTTCTGGTGCTATGTCCTCGACAGCCGGCGTCTCGTCAAAATCCTCGTCGCCA TCATCGACGACGTCGACCGAAACGGCGGCCGCAACACCCTCAGTCATCTTCACCGTGTCTGAGAAGTCCCGGCTA GCATCGGTATACGTAGAAGACGAGCAAGCAAATCTCCATCGCCGATTTCTGGCCTGGCAAGATGACAAAGGCCAT CTCATCGTGACGGAGTGGTCAGCCGGCAACAGAAGCCATTACCGTATCCGCGACCAGCTTCGATCCCGGATCCCA GACGCCAAGCTCGGCTCGCCACTCGCCATGGCAGCCAGTCCCTCCGGCGTCGTCCACCTCTTCTTTCTCGACACG CAAGACGCGCTCTCTCACGTCTTCCGCTCTGCCACCGGCGTGTGGGAAACGAGAACGCTGAGAAAAGGCAACGGC CCGGTAATTGCCTCGGGCCCGTCACCCCTATCGACGGCATGGCATCGCACCGGAGACGGAACCGAGGTTCTAGCC ATCGCCTACGCAAACTCGCAGGATCTGCGTCTGGCCATGACAGATGGTCCGACAGCCGAGTCTCCTTGGTTGGTC TCAAACGTGGTGTCTCTTCCGGGTCCTGTTCCCGGGCAGTTGCAGGAGCCTTGCTTTGCCGTGGCCGGAGATTGG CGTAACGCGATGGGAGCCCGTACAATGCTGATGGCTGTCTTGATGGAAGACGGACTATTCGCGTACGAGTGTCCC ATTGAGATGTGGCCGCCAGGGTCCAAGACGCCGTGTCGCCAACTCAACGACACGTTCCGAGACGACAAGGACCGA GACGTCAGTTTCGTGCCGCCCCCGAAGCAGCTCGGTTGGATCCGTCTGGACGGCCATCACAGCGCCGGCTACGAC TTCAGTCTCGTAGGCCTGGGCGAGGACGGCTTCATCAGCGAGAACAGGATCGGTGCCGACGAGGCGAGGAGAGCT GGGCACGGGTTGGAGACCCGGATGGCTGCGCGGGCCATTTCGGCGACGGACGAGGCTGTCTTGTTTGCGGCGGCG GGCGACGACATTTACATGTATCGACTGGACGTCGACAGCGGGACTTGGCGGGCGGAGGGGTCGTTGCAACTGACG TCTCGTGGCAGGACAGCATGA |
Transcript | >Ophcf2|02176 ATGCCAAACTCACCCGCGATCCCGCCTTGTACGGGAAAAGTCCCGTCGCTCCGTCCCGACATCATCCACAACCAC TATTACACGACGAATCCCAAGGCATTGCCCTGGTACCGTCGCAAGCCTTTCTTCTGGACCGCCATCGCAGTCCTC GTCTTTATCGTCGTCGCAGCCGCCGTCAGTCTCGGCGTCGTTCTCAAGCTCGAGCTCGGAAAGAGCCGGATGCGC GTTGACCATCAGACAAGTTCCTCCCCGCCTGCGACGGATCAGAACACGTCGTCTTTGCAGACGATGCAGCCTTCT CAGACTCGGACATCAGACACGTCTTCTGGTGCTATGTCCTCGACAGCCGGCGTCTCGTCAAAATCCTCGTCGCCA TCATCGACGACGTCGACCGAAACGGCGGCCGCAACACCCTCAGTCATCTTCACCGTGTCTGAGAAGTCCCGGCTA GCATCGGTATACGTAGAAGACGAGCAAGCAAATCTCCATCGCCGATTTCTGGCCTGGCAAGATGACAAAGGCCAT CTCATCGTGACGGAGTGGTCAGCCGGCAACAGAAGCCATTACCGTATCCGCGACCAGCTTCGATCCCGGATCCCA GACGCCAAGCTCGGCTCGCCACTCGCCATGGCAGCCAGTCCCTCCGGCGTCGTCCACCTCTTCTTTCTCGACACG CAAGACGCGCTCTCTCACGTCTTCCGCTCTGCCACCGGCGTGTGGGAAACGAGAACGCTGAGAAAAGGCAACGGC CCGGTAATTGCCTCGGGCCCGTCACCCCTATCGACGGCATGGCATCGCACCGGAGACGGAACCGAGGTTCTAGCC ATCGCCTACGCAAACTCGCAGGATCTGCGTCTGGCCATGACAGATGGTCCGACAGCCGAGTCTCCTTGGTTGGTC TCAAACGTGGTGTCTCTTCCGGGTCCTGTTCCCGGGCAGTTGCAGGAGCCTTGCTTTGCCGTGGCCGGAGATTGG CGTAACGCGATGGGAGCCCGTACAATGCTGATGGCTGTCTTGATGGAAGACGGACTATTCGCGTACGAGTGTCCC ATTGAGATGTGGCCGCCAGGGTCCAAGACGCCGTGTCGCCAACTCAACGACACGTTCCGAGACGACAAGGACCGA GACGTCAGTTTCGTGCCGCCCCCGAAGCAGCTCGGTTGGATCCGTCTGGACGGCCATCACAGCGCCGGCTACGAC TTCAGTCTCGTAGGCCTGGGCGAGGACGGCTTCATCAGCGAGAACAGGATCGGTGCCGACGAGGCGAGGAGAGCT GGGCACGGGTTGGAGACCCGGATGGCTGCGCGGGCCATTTCGGCGACGGACGAGGCTGTCTTGTTTGCGGCGGCG GGCGACGACATTTACATGTATCGACTGGACGTCGACAGCGGGACTTGGCGGGCGGAGGGGTCGTTGCAACTGACG TCTCGTGGCAGGACAGCATGA |
Gene | >Ophcf2|02176 ATGCCAAACTCACCCGCGATCCCGCCTTGTACGGGAAAAGTCCCGTCGCTCCGTCCCGACATCATCCACAACCAC TATTACACGACGAATCCCAAGGCATTGCCCTGGTACCGTCGCAAGCCTTTCTTCTGGACCGCCATCGCAGTCCTC GTCTTTATCGTCGTCGCAGCCGCCGTCAGTCTCGGCGTCGTTCTCAAGCTCGAGCTCGGAAAGAGCCGGATGCGC GTTGACCATCAGACAAGTTCCTCCCCGCCTGCGACGGATCAGAACACGTCGTCTTTGCAGACGATGCAGCCTTCT CAGACTCGGACATCAGACACGTCTTCTGGTGCTATGTCCTCGACAGCCGGCGTCTCGTCAAAATCCTCGTCGCCA TCATCGACGACGTCGACCGAAACGGCGGCCGCAACACCCTCAGTCATCTTCACCGTGTCTGAGAAGTCCCGGCTA GCATCGGTATACGTAGAAGACGAGCAAGCAAATCTCCATCGCCGATTTCTGGCCTGGCAAGATGACAAAGGCCAT CTCATCGTGACGGAGTGGTCAGCCGGCAACAGAAGCCATTACCGTATCCGCGACCAGCTTCGATCCCGGATCCCA GACGCCAAGCTCGGCTCGCCACTCGCCATGGCAGCCAGTCCCTCCGGCGTCGTCCACCTCTTCTTTCTCGACACG CAAGACGCGCTCTCTCACGTCTTCCGCTCTGCCACCGGCGTGTGGGAAACGAGAACGCTGAGAAAAGGCAACGGC CCGGTAATTGCCTCGGGCCCGTCACCCCTATCGACGGCATGGCATCGCACCGGAGACGGAACCGAGGTTCTAGCC ATCGCCTACGCAAACTCGCAGGATCTGCGTCTGGCCATGACAGATGGTCCGACAGCCGAGTCTCCTTGGTTGGTC TCAAACGTGGTGTCTCTTCCGGGTCCTGTTCCCGGGCAGTTGCAGGAGCCTTGCTTTGCCGTGGCCGGAGATTGG CGTAACGCGATGGGAGCCCGTACAATGCTGATGGCTGTCTTGATGGAAGACGGACTATTCGCGTACGAGTGTCCC ATTGAGATGTGGCCGCCAGGGTCCAAGACGCCGTGTCGCCAACTCAACGACACGTTCCGAGGTGAACATCTCTTC TCCTCCCCTTCACCGCTGAATGAACAGCAAGACGCTGACAAGACTTGCAGACGACAAGGACCGAGACGTCAGTTT CGTGCCGCCCCCGAAGCAGCTCGGTTGGATCCGTCTGGACGGCCATCACAGCGCCGGCTACGACTTCAGTCTCGT AGGCCTGGGCGAGGACGGCTTCATCAGCGAGAACAGGATCGGTGCCGACGAGGCGAGGAGAGCTGGGCACGGGTT GGAGACCCGGATGGCTGCGCGGGCCATTTCGGCGACGGACGAGGCTGTCTTGTTTGCGGCGGCGGGCGACGACAT TTACATGTATCGACTGGACGTCGACAGCGGGACTTGGCGGGCGGAGGGGTCGTTGCAACTGACGTCTCGTGGCAG GACAGCATGA |