© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02171 |
| Gene name | |
| Location | scaffold_02:2819308..2820361 |
| Strand | + |
| Gene length (bp) | 1053 |
| Transcript length (bp) | 1053 |
| Coding sequence length (bp) | 1053 |
| Protein length (aa) | 351 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07859 | Abhydrolase_3 | alpha/beta hydrolase fold | 9.6E-48 | 95 | 316 |
| PF20434 | BD-FAE | BD-FAE | 2.8E-16 | 81 | 188 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016787 | hydrolase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 36 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 21.91 | 10.08 | 33.74 |
| Alive | In ants, during behavior modification | 28.89 | 10.80 | 46.99 |
| Dead | In ants, recently dead | 24.49 | 11.42 | 37.55 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.295096 | no |
| Alive | Dead | 0.499030 | no |
| Dead | Fungus | 0.691499 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02171 MAQHEALQPIHPSMAGKLDPVFEELYNQHVAKTAAQPVNLDRLRASYSTLYSYGTGPAPEVGRVYDADVPADDGA RLAVRVYEPAASPGPWPVHINFHGGGWGLGDLETEAHVCRHLCAKAGVAVIDVAYRLVPEFAFPTAVTDGFAALR HVRDAEGARRFKVRSESISLGGVSAGGCIALALAHMARDERPDPIPLRIVVASTPVIDDISRYSSAADSPFASMR ENEMAPTLNWARLAWFDKLKWSTGGDQQRQQAGWLANLLSAPRYDGLAKTVIYTAGADPLRDEGERYAQLLMNNG VEVTARRYPGVPHPFIHMDKHLWQARDLIDRTARELRLAHWEPLVTDSRF* |
| Coding | >Ophcf2|02171 ATGGCACAGCACGAGGCGCTGCAGCCGATCCACCCGTCTATGGCGGGCAAGCTGGATCCCGTCTTCGAGGAGCTG TACAACCAGCACGTGGCCAAGACGGCGGCCCAGCCCGTGAACCTCGACCGGTTGCGGGCCTCGTACTCGACCCTC TATAGCTACGGAACCGGCCCGGCTCCGGAAGTGGGTCGCGTCTACGATGCCGACGTTCCGGCCGACGACGGCGCC CGGCTGGCGGTTCGTGTCTACGAGCCAGCCGCCTCGCCCGGTCCGTGGCCCGTCCACATCAACTTCCACGGTGGC GGCTGGGGTCTAGGCGACCTCGAGACCGAGGCCCACGTGTGCAGACACCTCTGTGCCAAGGCCGGCGTCGCCGTC ATCGACGTGGCCTACCGCCTGGTGCCCGAGTTTGCCTTCCCAACGGCCGTGACCGACGGGTTTGCGGCCTTGCGT CACGTCCGCGACGCCGAGGGCGCCCGGCGGTTCAAGGTCCGCTCCGAAAGCATCTCGCTGGGCGGCGTCTCGGCC GGCGGCTGCATCGCCCTGGCATTGGCGCACATGGCGCGCGATGAGCGGCCGGACCCTATTCCCCTGCGGATCGTC GTCGCCTCCACGCCCGTCATCGACGACATCTCGCGGTACAGCTCAGCGGCCGACTCGCCCTTTGCCTCGATGCGA GAGAACGAGATGGCGCCGACGCTCAACTGGGCTCGGCTCGCCTGGTTCGACAAGCTCAAATGGTCGACGGGAGGC GACCAACAGCGGCAGCAGGCCGGCTGGTTGGCCAACCTGCTCAGCGCGCCGCGCTACGACGGCCTGGCCAAGACG GTCATCTACACGGCGGGGGCAGACCCGCTGCGCGATGAAGGCGAGCGGTACGCGCAGCTGCTCATGAACAACGGT GTCGAGGTGACGGCCAGGCGCTATCCCGGGGTGCCGCACCCCTTTATCCACATGGACAAGCATCTGTGGCAGGCC AGGGACTTGATCGACCGCACGGCCCGGGAGCTTCGTCTGGCGCACTGGGAGCCCTTGGTGACCGACAGCCGATTC TAG |
| Transcript | >Ophcf2|02171 ATGGCACAGCACGAGGCGCTGCAGCCGATCCACCCGTCTATGGCGGGCAAGCTGGATCCCGTCTTCGAGGAGCTG TACAACCAGCACGTGGCCAAGACGGCGGCCCAGCCCGTGAACCTCGACCGGTTGCGGGCCTCGTACTCGACCCTC TATAGCTACGGAACCGGCCCGGCTCCGGAAGTGGGTCGCGTCTACGATGCCGACGTTCCGGCCGACGACGGCGCC CGGCTGGCGGTTCGTGTCTACGAGCCAGCCGCCTCGCCCGGTCCGTGGCCCGTCCACATCAACTTCCACGGTGGC GGCTGGGGTCTAGGCGACCTCGAGACCGAGGCCCACGTGTGCAGACACCTCTGTGCCAAGGCCGGCGTCGCCGTC ATCGACGTGGCCTACCGCCTGGTGCCCGAGTTTGCCTTCCCAACGGCCGTGACCGACGGGTTTGCGGCCTTGCGT CACGTCCGCGACGCCGAGGGCGCCCGGCGGTTCAAGGTCCGCTCCGAAAGCATCTCGCTGGGCGGCGTCTCGGCC GGCGGCTGCATCGCCCTGGCATTGGCGCACATGGCGCGCGATGAGCGGCCGGACCCTATTCCCCTGCGGATCGTC GTCGCCTCCACGCCCGTCATCGACGACATCTCGCGGTACAGCTCAGCGGCCGACTCGCCCTTTGCCTCGATGCGA GAGAACGAGATGGCGCCGACGCTCAACTGGGCTCGGCTCGCCTGGTTCGACAAGCTCAAATGGTCGACGGGAGGC GACCAACAGCGGCAGCAGGCCGGCTGGTTGGCCAACCTGCTCAGCGCGCCGCGCTACGACGGCCTGGCCAAGACG GTCATCTACACGGCGGGGGCAGACCCGCTGCGCGATGAAGGCGAGCGGTACGCGCAGCTGCTCATGAACAACGGT GTCGAGGTGACGGCCAGGCGCTATCCCGGGGTGCCGCACCCCTTTATCCACATGGACAAGCATCTGTGGCAGGCC AGGGACTTGATCGACCGCACGGCCCGGGAGCTTCGTCTGGCGCACTGGGAGCCCTTGGTGACCGACAGCCGATTC TAG |
| Gene | >Ophcf2|02171 ATGGCACAGCACGAGGCGCTGCAGCCGATCCACCCGTCTATGGCGGGCAAGCTGGATCCCGTCTTCGAGGAGCTG TACAACCAGCACGTGGCCAAGACGGCGGCCCAGCCCGTGAACCTCGACCGGTTGCGGGCCTCGTACTCGACCCTC TATAGCTACGGAACCGGCCCGGCTCCGGAAGTGGGTCGCGTCTACGATGCCGACGTTCCGGCCGACGACGGCGCC CGGCTGGCGGTTCGTGTCTACGAGCCAGCCGCCTCGCCCGGTCCGTGGCCCGTCCACATCAACTTCCACGGTGGC GGCTGGGGTCTAGGCGACCTCGAGACCGAGGCCCACGTGTGCAGACACCTCTGTGCCAAGGCCGGCGTCGCCGTC ATCGACGTGGCCTACCGCCTGGTGCCCGAGTTTGCCTTCCCAACGGCCGTGACCGACGGGTTTGCGGCCTTGCGT CACGTCCGCGACGCCGAGGGCGCCCGGCGGTTCAAGGTCCGCTCCGAAAGCATCTCGCTGGGCGGCGTCTCGGCC GGCGGCTGCATCGCCCTGGCATTGGCGCACATGGCGCGCGATGAGCGGCCGGACCCTATTCCCCTGCGGATCGTC GTCGCCTCCACGCCCGTCATCGACGACATCTCGCGGTACAGCTCAGCGGCCGACTCGCCCTTTGCCTCGATGCGA GAGAACGAGATGGCGCCGACGCTCAACTGGGCTCGGCTCGCCTGGTTCGACAAGCTCAAATGGTCGACGGGAGGC GACCAACAGCGGCAGCAGGCCGGCTGGTTGGCCAACCTGCTCAGCGCGCCGCGCTACGACGGCCTGGCCAAGACG GTCATCTACACGGCGGGGGCAGACCCGCTGCGCGATGAAGGCGAGCGGTACGCGCAGCTGCTCATGAACAACGGT GTCGAGGTGACGGCCAGGCGCTATCCCGGGGTGCCGCACCCCTTTATCCACATGGACAAGCATCTGTGGCAGGCC AGGGACTTGATCGACCGCACGGCCCGGGAGCTTCGTCTGGCGCACTGGGAGCCCTTGGTGACCGACAGCCGATTC TAG |