Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|02167
Gene name
Locationscaffold_02:2808734..2809784
Strand-
Gene length (bp)1050
Transcript length (bp)1050
Coding sequence length (bp)1050
Protein length (aa) 350

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 0.01 0.00 0.14
Alive In ants, during behavior modification 53.65 27.66 79.63
Dead In ants, recently dead 34.74 15.28 54.19

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.095668 no
Alive Dead 0.023715 yes
Dead Fungus 0.095668 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|02167
MLLQLLYMALSATAACWKAHDPVAIARNKTTALANTIKVDWANPPSYSHTRRESSCHHYTVAFQCHRTAFISSER
LLPLDGKRLKKALKIDYDILPQRSFLNINTDSVLVTLGEAEWENQSKDDLWLASALVTNMGTIRISMAKSLDDRL
MTSRIKSHGLQGECPGGHECHFESWIFYTVFEGPCLRQAIINSCDGSDDERYLINACEWVNLPPDSYRDAVEREY
DYISSHSRHDYSSVYSTGEKRPWPGNLRCSQYYKWAWKTCRDPKGPRFDDMARCTFRTPILRDGEPLSTTVFIKQ
DRRGKRRRSVDETRESKSELTDFKVDIVWGFDGVDADGRVVFREPDRKV*
Coding >Ophcf2|02167
ATGCTTCTCCAGCTTCTTTACATGGCCCTGTCTGCTACTGCCGCATGTTGGAAAGCCCACGACCCTGTGGCCATT
GCCAGAAACAAGACAACCGCTCTGGCCAACACCATCAAAGTAGACTGGGCCAACCCCCCGTCCTACAGTCATACA
CGCAGGGAAAGCAGTTGCCACCATTACACAGTTGCTTTTCAATGCCATAGAACGGCCTTCATCAGCAGCGAGAGA
CTGTTGCCGCTGGACGGGAAGAGGTTAAAGAAGGCCTTGAAGATCGACTACGATATCCTCCCCCAACGGAGCTTC
CTGAACATCAACACGGATAGCGTGCTCGTGACTCTGGGGGAGGCCGAATGGGAAAACCAGAGCAAGGATGATTTG
TGGCTCGCCTCGGCCCTCGTCACCAACATGGGAACCATACGGATTTCCATGGCCAAGAGTCTCGACGACCGTCTC
ATGACGTCGAGAATCAAGTCCCATGGCCTTCAAGGAGAGTGCCCGGGCGGTCACGAATGTCACTTCGAGTCGTGG
ATCTTCTATACCGTATTCGAGGGACCGTGCCTACGTCAAGCCATCATCAACAGCTGCGATGGATCAGACGACGAG
AGATATCTCATCAATGCTTGTGAATGGGTCAATCTACCGCCTGATAGTTACAGAGACGCCGTAGAAAGGGAGTAC
GACTACATCTCATCCCATTCAAGACACGACTATTCCTCCGTGTACTCGACGGGCGAAAAACGTCCCTGGCCTGGG
AATCTGCGTTGCTCGCAGTACTACAAATGGGCTTGGAAGACGTGCCGCGATCCTAAGGGGCCACGCTTCGATGAC
ATGGCCAGGTGCACGTTCCGGACTCCCATCCTGAGGGACGGAGAGCCGCTGTCGACGACCGTCTTTATCAAGCAG
GACCGTCGGGGGAAGCGGAGGCGGAGCGTGGATGAGACGAGGGAGTCCAAGTCGGAGTTGACGGACTTCAAGGTC
GATATAGTATGGGGCTTTGATGGCGTGGACGCGGATGGTAGGGTGGTGTTTCGGGAGCCGGACAGGAAGGTGTGA
Transcript >Ophcf2|02167
ATGCTTCTCCAGCTTCTTTACATGGCCCTGTCTGCTACTGCCGCATGTTGGAAAGCCCACGACCCTGTGGCCATT
GCCAGAAACAAGACAACCGCTCTGGCCAACACCATCAAAGTAGACTGGGCCAACCCCCCGTCCTACAGTCATACA
CGCAGGGAAAGCAGTTGCCACCATTACACAGTTGCTTTTCAATGCCATAGAACGGCCTTCATCAGCAGCGAGAGA
CTGTTGCCGCTGGACGGGAAGAGGTTAAAGAAGGCCTTGAAGATCGACTACGATATCCTCCCCCAACGGAGCTTC
CTGAACATCAACACGGATAGCGTGCTCGTGACTCTGGGGGAGGCCGAATGGGAAAACCAGAGCAAGGATGATTTG
TGGCTCGCCTCGGCCCTCGTCACCAACATGGGAACCATACGGATTTCCATGGCCAAGAGTCTCGACGACCGTCTC
ATGACGTCGAGAATCAAGTCCCATGGCCTTCAAGGAGAGTGCCCGGGCGGTCACGAATGTCACTTCGAGTCGTGG
ATCTTCTATACCGTATTCGAGGGACCGTGCCTACGTCAAGCCATCATCAACAGCTGCGATGGATCAGACGACGAG
AGATATCTCATCAATGCTTGTGAATGGGTCAATCTACCGCCTGATAGTTACAGAGACGCCGTAGAAAGGGAGTAC
GACTACATCTCATCCCATTCAAGACACGACTATTCCTCCGTGTACTCGACGGGCGAAAAACGTCCCTGGCCTGGG
AATCTGCGTTGCTCGCAGTACTACAAATGGGCTTGGAAGACGTGCCGCGATCCTAAGGGGCCACGCTTCGATGAC
ATGGCCAGGTGCACGTTCCGGACTCCCATCCTGAGGGACGGAGAGCCGCTGTCGACGACCGTCTTTATCAAGCAG
GACCGTCGGGGGAAGCGGAGGCGGAGCGTGGATGAGACGAGGGAGTCCAAGTCGGAGTTGACGGACTTCAAGGTC
GATATAGTATGGGGCTTTGATGGCGTGGACGCGGATGGTAGGGTGGTGTTTCGGGAGCCGGACAGGAAGGTGTGA
Gene >Ophcf2|02167
ATGCTTCTCCAGCTTCTTTACATGGCCCTGTCTGCTACTGCCGCATGTTGGAAAGCCCACGACCCTGTGGCCATT
GCCAGAAACAAGACAACCGCTCTGGCCAACACCATCAAAGTAGACTGGGCCAACCCCCCGTCCTACAGTCATACA
CGCAGGGAAAGCAGTTGCCACCATTACACAGTTGCTTTTCAATGCCATAGAACGGCCTTCATCAGCAGCGAGAGA
CTGTTGCCGCTGGACGGGAAGAGGTTAAAGAAGGCCTTGAAGATCGACTACGATATCCTCCCCCAACGGAGCTTC
CTGAACATCAACACGGATAGCGTGCTCGTGACTCTGGGGGAGGCCGAATGGGAAAACCAGAGCAAGGATGATTTG
TGGCTCGCCTCGGCCCTCGTCACCAACATGGGAACCATACGGATTTCCATGGCCAAGAGTCTCGACGACCGTCTC
ATGACGTCGAGAATCAAGTCCCATGGCCTTCAAGGAGAGTGCCCGGGCGGTCACGAATGTCACTTCGAGTCGTGG
ATCTTCTATACCGTATTCGAGGGACCGTGCCTACGTCAAGCCATCATCAACAGCTGCGATGGATCAGACGACGAG
AGATATCTCATCAATGCTTGTGAATGGGTCAATCTACCGCCTGATAGTTACAGAGACGCCGTAGAAAGGGAGTAC
GACTACATCTCATCCCATTCAAGACACGACTATTCCTCCGTGTACTCGACGGGCGAAAAACGTCCCTGGCCTGGG
AATCTGCGTTGCTCGCAGTACTACAAATGGGCTTGGAAGACGTGCCGCGATCCTAAGGGGCCACGCTTCGATGAC
ATGGCCAGGTGCACGTTCCGGACTCCCATCCTGAGGGACGGAGAGCCGCTGTCGACGACCGTCTTTATCAAGCAG
GACCGTCGGGGGAAGCGGAGGCGGAGCGTGGATGAGACGAGGGAGTCCAAGTCGGAGTTGACGGACTTCAAGGTC
GATATAGTATGGGGCTTTGATGGCGTGGACGCGGATGGTAGGGTGGTGTTTCGGGAGCCGGACAGGAAGGTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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