© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02165 |
| Gene name | |
| Location | scaffold_02:2806859..2807697 |
| Strand | + |
| Gene length (bp) | 838 |
| Transcript length (bp) | 735 |
| Coding sequence length (bp) | 735 |
| Protein length (aa) | 245 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13561 | adh_short_C2 | Enoyl-(Acyl carrier protein) reductase | 5.9E-35 | 13 | 239 |
| PF00106 | adh_short | short chain dehydrogenase | 3.4E-34 | 7 | 181 |
| PF08659 | KR | KR domain | 2.4E-10 | 8 | 122 |
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 1.2E-08 | 10 | 88 |
| PF02254 | TrkA_N | TrkA-N domain | 3.9E-06 | 14 | 72 |
| PF02737 | 3HCDH_N | 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain | 1.1E-04 | 14 | 52 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006631 | fatty acid metabolic process | Yes |
| GO:0070403 | NAD+ binding | Yes |
| GO:0006813 | potassium ion transport | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0051234 | establishment of localization | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0043436 | oxoacid metabolic process | No |
| GO:0006810 | transport | No |
| GO:0019752 | carboxylic acid metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0008152 | metabolic process | No |
| GO:0051287 | NAD binding | No |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0005488 | binding | No |
| GO:0008150 | biological_process | No |
| GO:0051179 | localization | No |
| GO:0006812 | cation transport | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0000166 | nucleotide binding | No |
| GO:0030001 | metal ion transport | No |
| GO:0032787 | monocarboxylic acid metabolic process | No |
| GO:0036094 | small molecule binding | No |
| GO:0006811 | ion transport | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0043167 | ion binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02165 MSAAAGKTCLVTGGAGGLGKAIAKAFLAAGAQVIVCDINQERVSQATTELAPTGRFRAVTADVTDPEAMRRLFGD FARLDILVNNAAIMDRFEPVADLDLDLWERVLAVNLTAPLLLSKLAVRDMLSRPEPDGCIINVASAAAKAGWLAG LTKSTASFYGDKGIRCNALMLGPMADTNIADAFLTDSHSQGRQRVTDILTGTRPRFCHVGDVAELCVSLACGQGW NLVNGGVVAVDHGWLSLVG* |
| Coding | >Ophcf2|02165 ATGTCAGCCGCAGCCGGAAAGACCTGCCTCGTGACCGGAGGCGCCGGCGGCCTCGGTAAAGCCATAGCCAAAGCC TTCCTCGCGGCCGGAGCCCAAGTCATCGTGTGCGACATCAACCAGGAGCGCGTCTCGCAGGCAACAACAGAGCTG GCGCCAACGGGCCGCTTCCGGGCCGTGACGGCCGACGTGACGGACCCGGAAGCCATGCGCCGCCTCTTCGGCGAC TTTGCTCGTCTCGACATCCTCGTCAACAACGCGGCTATCATGGATCGCTTTGAGCCCGTTGCTGACCTTGATCTC GACTTGTGGGAAAGGGTGCTGGCGGTTAACCTGACGGCGCCCCTGCTTCTTAGCAAGTTGGCGGTTCGAGACATG TTGAGTCGGCCGGAGCCGGACGGGTGCATCATCAACGTTGCGTCGGCGGCAGCCAAGGCTGGCTGGCTTGCAGGC CTGACCAAGTCGACGGCCTCGTTCTACGGCGACAAGGGCATCCGCTGCAACGCCCTGATGCTGGGCCCCATGGCG GACACCAACATTGCCGACGCGTTCCTGACTGATAGTCATTCGCAGGGGCGTCAGAGGGTTACGGACATCTTGACG GGGACGAGGCCGCGCTTCTGTCATGTGGGTGACGTGGCGGAGCTGTGCGTTTCGCTTGCGTGCGGACAGGGGTGG AATCTTGTCAACGGAGGCGTTGTTGCTGTTGATCATGGATGGTTGAGTCTCGTGGGCTGA |
| Transcript | >Ophcf2|02165 ATGTCAGCCGCAGCCGGAAAGACCTGCCTCGTGACCGGAGGCGCCGGCGGCCTCGGTAAAGCCATAGCCAAAGCC TTCCTCGCGGCCGGAGCCCAAGTCATCGTGTGCGACATCAACCAGGAGCGCGTCTCGCAGGCAACAACAGAGCTG GCGCCAACGGGCCGCTTCCGGGCCGTGACGGCCGACGTGACGGACCCGGAAGCCATGCGCCGCCTCTTCGGCGAC TTTGCTCGTCTCGACATCCTCGTCAACAACGCGGCTATCATGGATCGCTTTGAGCCCGTTGCTGACCTTGATCTC GACTTGTGGGAAAGGGTGCTGGCGGTTAACCTGACGGCGCCCCTGCTTCTTAGCAAGTTGGCGGTTCGAGACATG TTGAGTCGGCCGGAGCCGGACGGGTGCATCATCAACGTTGCGTCGGCGGCAGCCAAGGCTGGCTGGCTTGCAGGC CTGACCAAGTCGACGGCCTCGTTCTACGGCGACAAGGGCATCCGCTGCAACGCCCTGATGCTGGGCCCCATGGCG GACACCAACATTGCCGACGCGTTCCTGACTGATAGTCATTCGCAGGGGCGTCAGAGGGTTACGGACATCTTGACG GGGACGAGGCCGCGCTTCTGTCATGTGGGTGACGTGGCGGAGCTGTGCGTTTCGCTTGCGTGCGGACAGGGGTGG AATCTTGTCAACGGAGGCGTTGTTGCTGTTGATCATGGATGGTTGAGTCTCGTGGGCTGA |
| Gene | >Ophcf2|02165 ATGTCAGCCGCAGCCGGAAAGACCTGCCTCGTGACCGGAGGCGCCGGCGGCCTCGGTAAAGCCATAGCCAAAGCC TTCCTCGCGGCCGGAGCCCAAGTCATCGTGTGCGACATCAACCAGGAGCGCGTCTCGCAGGCAACAACAGAGCTG GCGCCAACGGGCCGCTTCCGGGCCGTGACGGCCGACGTGACGGACCCGGAAGCCATGCGCCGCCTCTTCGGCGAC TTTGCTCGTCTCGACATCCTCGTCAACAACGCGGCTATCATGGATCGCTTTGAGCCCGTTGCTGACCTTGATCTC GACTTGTGGGAAAGGGTGCTGGCGGTTAACCTGACGGCGCCCCTGCTTCTTAGCAAGTTGGCGGTTCGAGACATG TTGAGTCGGCCGGAGCCGGACGGGTGCATCATCAACGTTGCGTCGGCGGCAGCCAAGGCTGGCTGGCTTGCAGGT TAGTTCATGGAGAGGGAAAAGGGGGGGCAATGGGGCTCGGGCTCACACATACATTGTTGTTCAAGGAACGGCTTA TACGACGAGCAAGCATGGGCTCATAGGCCTGACCAAGTCGACGGCCTCGTTCTACGGCGACAAGGGCATCCGCTG CAACGCCCTGATGCTGGGCCCCATGGCGGACACCAACATTGCCGACGCGTTCCTGACTGATAGTCATTCGCAGGG GCGTCAGAGGGTTACGGACATCTTGACGGGGACGAGGCCGCGCTTCTGTCATGTGGGTGACGTGGCGGAGCTGTG CGTTTCGCTTGCGTGCGGACAGGGGTGGAATCTTGTCAACGGAGGCGTTGTTGCTGTTGATCATGGATGGTTGAG TCTCGTGGGCTGA |