Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|02163
Gene name
Location	scaffold_02:2802959..2804332
Strand	+
Gene length (bp)	1373
Transcript length (bp)	993
Coding sequence length (bp)	993
Protein length (aa)	331

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00106	adh_short	short chain dehydrogenase	8.5E-28	55	241
PF13561	adh_short_C2	Enoyl-(Acyl carrier protein) reductase	3.2E-18	61	214
PF08659	KR	KR domain	6.3E-08	57	173

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	9	31	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	0.04	0.00	0.19
Alive	In ants, during behavior modification	539.94	205.52	874.36
Dead	In ants, recently dead	309.93	140.41	479.46

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.269212	no
Alive	Dead	0.006905	yes
Dead	Fungus	0.269212	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|02163 MLPPCVRRLCIRLLDLVQGCLLYIPLIIIFVRSRCKSSPGRKPWDESQIPALDGKVVVVTGANTGIGHQTARHLA LHGARVYLAARREEAAKTAIRRLAEEHPSIPRHNLIWLPLDLASQASVSRAARELRAKEKRLDILVNNAGVDPYE YCRTSDGFEMAMAVNHIGHWTLTYCLLPLLKKTAAEAGSDVRVVTTLRYGTSKQANILFASELQRRLDAENHDII SLSVQPGIVRTRGASRAMPWVARPLLWLFSDASSDQGARTSLFAATAEEVKRHGEAWKGRYLDGPGEVGVPSLRA RDWGLACNLWHLTEGAVRATGALDKVVVKV*
Coding	>Ophcf2\|02163 ATGCTTCCGCCTTGCGTACGCCGCTTGTGCATCCGACTCTTGGACCTTGTTCAAGGCTGTCTCCTCTACATCCCC CTAATCATCATCTTTGTTCGAAGTCGCTGCAAGTCCAGCCCGGGACGTAAGCCATGGGACGAGTCTCAGATACCA GCCCTCGATGGCAAGGTGGTCGTCGTGACGGGAGCCAACACGGGTATCGGCCATCAGACGGCCAGACACCTGGCA TTGCATGGCGCCAGGGTCTATCTCGCAGCCAGGAGGGAAGAAGCTGCAAAGACGGCAATCCGGCGTCTCGCCGAG GAGCATCCGTCGATACCGAGGCATAACCTGATTTGGCTGCCTCTCGATCTGGCCAGCCAGGCCAGCGTGTCTCGG GCGGCTCGCGAGTTGCGGGCTAAAGAGAAGCGACTGGATATACTTGTCAACAACGCGGGAGTCGATCCCTATGAA TACTGTAGGACCTCGGATGGATTCGAGATGGCGATGGCGGTTAATCATATTGGCCACTGGACTTTGACGTATTGC CTGCTGCCCCTGCTGAAGAAAACTGCGGCCGAGGCAGGCTCTGATGTTCGCGTCGTCACGACGCTCCGCTACGGA ACCTCCAAACAAGCCAACATCCTATTCGCATCCGAGCTCCAGCGCCGCCTCGACGCCGAAAACCACGACATCATC TCGCTGTCCGTCCAACCGGGCATCGTGAGGACGAGGGGAGCATCCCGGGCGATGCCCTGGGTGGCACGACCACTG CTCTGGCTGTTCTCCGACGCTTCTTCGGATCAGGGGGCTCGGACGTCGTTGTTTGCCGCGACGGCGGAGGAGGTG AAGCGTCATGGGGAGGCTTGGAAGGGTCGCTATTTGGATGGGCCGGGGGAGGTTGGGGTTCCTTCTTTGAGGGCG CGGGATTGGGGGTTGGCTTGTAATTTGTGGCATCTTACTGAAGGGGCTGTGAGAGCGACGGGGGCTTTGGACAAG GTTGTTGTCAAGGTGTGA
Transcript	>Ophcf2\|02163 ATGCTTCCGCCTTGCGTACGCCGCTTGTGCATCCGACTCTTGGACCTTGTTCAAGGCTGTCTCCTCTACATCCCC CTAATCATCATCTTTGTTCGAAGTCGCTGCAAGTCCAGCCCGGGACGTAAGCCATGGGACGAGTCTCAGATACCA GCCCTCGATGGCAAGGTGGTCGTCGTGACGGGAGCCAACACGGGTATCGGCCATCAGACGGCCAGACACCTGGCA TTGCATGGCGCCAGGGTCTATCTCGCAGCCAGGAGGGAAGAAGCTGCAAAGACGGCAATCCGGCGTCTCGCCGAG GAGCATCCGTCGATACCGAGGCATAACCTGATTTGGCTGCCTCTCGATCTGGCCAGCCAGGCCAGCGTGTCTCGG GCGGCTCGCGAGTTGCGGGCTAAAGAGAAGCGACTGGATATACTTGTCAACAACGCGGGAGTCGATCCCTATGAA TACTGTAGGACCTCGGATGGATTCGAGATGGCGATGGCGGTTAATCATATTGGCCACTGGACTTTGACGTATTGC CTGCTGCCCCTGCTGAAGAAAACTGCGGCCGAGGCAGGCTCTGATGTTCGCGTCGTCACGACGCTCCGCTACGGA ACCTCCAAACAAGCCAACATCCTATTCGCATCCGAGCTCCAGCGCCGCCTCGACGCCGAAAACCACGACATCATC TCGCTGTCCGTCCAACCGGGCATCGTGAGGACGAGGGGAGCATCCCGGGCGATGCCCTGGGTGGCACGACCACTG CTCTGGCTGTTCTCCGACGCTTCTTCGGATCAGGGGGCTCGGACGTCGTTGTTTGCCGCGACGGCGGAGGAGGTG AAGCGTCATGGGGAGGCTTGGAAGGGTCGCTATTTGGATGGGCCGGGGGAGGTTGGGGTTCCTTCTTTGAGGGCG CGGGATTGGGGGTTGGCTTGTAATTTGTGGCATCTTACTGAAGGGGCTGTGAGAGCGACGGGGGCTTTGGACAAG GTTGTTGTCAAGGTGTGA
Gene	>Ophcf2\|02163 ATGCTTCCGCCTTGCGTACGCCGCTTGTGCATCCGACTCTTGGACCTTGTTCAAGGCTGTCTCCTCTACATCCCC CTAATCATCATCTTTGTTCGAAGTCGCTGCAAGTCCAGCCCGGGACGTAAGCCATGGGACGAGTCTCAGATACCA GCCCTCGATGGCAAGGTGGTCGTCGTGACGGGAGCCAAGTTTGTCAACTTCCACGCCATGAATCGCGCGGCCTGA CGGCAGATGCAGCACGGGTATCGGCCATCAGACGGCCAGACACCTGGCATTGCATGGCGCCAGGGTCTATCTCGC AGCCAGGAGGGAAGAAGCTGCAAAGACGGCAATCCGGCGTCTCGCCGAGGAGCATCCGTCGATACCGAGGCATAA CCTGATTTGGCTGCCTCTCGATCTGGCCAGCCAGGCCAGCGTGTCTCGGGCGGCTCGCGAGTTGCGGGCTAAAGA GAAGCGACTGGATATACTTGGTATGTGTTGACGTCGAGGTTGACTGGTTGAATTGAAGAGGGATTGATATTGCTG AGAGAGGACAGTCAACAACGCGGGAGTCGATCCCTATGAATACTGTAGGACCTCGGATGGATTCGAGATGGCGAT GGCGGTTAAGTGAGACATGTCGTGGTTGCTTCTGCCCCGTTGACACCTTTGTTGACTCGATACTGTTGCGGATCG GGCAGTCATATTGGCCACTGGACTTTGACGTATTGCCTGCTGCCCCTGCTGAAGAAAACTGCGGCCGAGGCAGGC TCTGATGTTCGCGTCGTCACGGTAAGTCTCCTGACTCTCGACTCGAATCCCGAGCATAACACAACACGTACATGC ATTCGTACTAAGCCATCGTCAACCCCCCCAAGCTATCATCACGAGCCGAGGCATACTCCTCCGGAAACCGCTTCA CCTCCCCCAAAGACCTTGACGACGCCTGCACCCTCCGCGGATGGGAAGACTCATGTCTCGGCCAGACGCTCCGCT ACGGAACCTCCAAACAAGCCAACATCCTATTCGCATCCGAGCTCCAGCGCCGCCTCGACGCCGAAAACCACGACA TCATCTCGCTGTCCGTCCAACCGGGCATCGTGAGGACGAGGGGAGCATCCCGGGCGATGCCCTGGGTGGCACGAC CACTGCTCTGGCTGTTCTCCGACGCTTCTTCGGATCAGGGGGCTCGGACGTCGTTGTTTGCCGCGACGGCGGAGG AGGTGAAGCGTCATGGGGAGGCTTGGAAGGGTCGCTATTTGGATGGGCCGGGGGAGGTTGGGGTTCCTTCTTTGA GGGCGCGGGATTGGGGGTTGGCTTGTAATTTGTGGCATCTTACTGAAGGGGCTGTGAGAGCGACGGGGGCTTTGG ACAAGGTTGTTGTCAAGGTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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