© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02157 |
| Gene name | |
| Location | scaffold_02:2781815..2783824 |
| Strand | + |
| Gene length (bp) | 2009 |
| Transcript length (bp) | 1008 |
| Coding sequence length (bp) | 1008 |
| Protein length (aa) | 336 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11712 | Vma12 | Endoplasmic reticulum-based factor for assembly of V-ATPase | 3.6E-42 | 67 | 209 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0070072 | vacuolar proton-transporting V-type ATPase complex assembly | Yes |
| GO:0043933 | protein-containing complex organization | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0070071 | proton-transporting two-sector ATPase complex assembly | No |
| GO:0065003 | protein-containing complex assembly | No |
| GO:0008150 | biological_process | No |
| GO:0070070 | proton-transporting V-type ATPase complex assembly | No |
| GO:0009987 | cellular process | No |
| GO:0022607 | cellular component assembly | No |
| GO:0016043 | cellular component organization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 14 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 152 | 171 | 19 |
| 2 | 181 | 203 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 22.95 | 10.52 | 35.38 |
| Alive | In ants, during behavior modification | 22.36 | 10.03 | 34.69 |
| Dead | In ants, recently dead | 17.44 | 7.39 | 27.49 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.930105 | no |
| Alive | Dead | 0.271647 | no |
| Dead | Fungus | 0.280490 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02157 MVLLTMTPPMVEGLDSLRTADGNEDDVGSEPSLAQPAVGKPISHAQVVHLWTALQSSQLSPCSLERLLRGSRVFV PPPPPKPEPSEEYKALMARLRREEAARAYQRMVSPTPPTESFYDRFPTAAVNRPTHASDLGDEDDVSYAEVQRQV MLIINFLVSILGVAGTLWVAARYWSLPARLLLALSGAIVVAVAETAVYRVYLWRKGQARAKQKAVVETQEVVNTP TEENHAGDRVQIPSDSDDTEKRCSAAPCADGHCVTQLAETERSAKPGGETKRRRRPRVQTTLNLSTGGTFAECKI CNTVWNPLFPDDVSYHTRRHAKVTARARRKKDDYL* |
| Coding | >Ophcf2|02157 ATGGTGCTCCTCACCATGACGCCGCCCATGGTTGAGGGCCTGGACAGCCTGAGAACGGCTGATGGCAACGAAGAT GACGTTGGCTCCGAGCCCTCGCTTGCCCAGCCTGCAGTCGGCAAGCCAATATCTCACGCCCAGGTGGTCCATCTC TGGACAGCTCTTCAGTCATCGCAGCTTTCTCCCTGCAGTCTGGAAAGACTCCTCCGGGGCTCTCGCGTCTTTGTG CCGCCGCCGCCGCCAAAGCCCGAGCCCTCGGAAGAATACAAGGCGCTCATGGCCCGCCTTCGCCGAGAAGAGGCC GCCCGCGCTTACCAGCGAATGGTCAGTCCGACTCCGCCGACCGAGAGCTTCTACGACCGCTTCCCGACCGCTGCG GTGAACCGTCCGACACACGCGTCCGATCTGGGAGACGAGGACGACGTGTCGTACGCAGAGGTGCAGCGACAGGTC ATGCTCATCATCAACTTTCTCGTGAGTATCCTGGGCGTCGCGGGGACCTTGTGGGTGGCGGCGCGATACTGGAGT CTCCCTGCGCGGCTGCTTCTCGCCCTGAGTGGCGCCATCGTCGTCGCCGTAGCCGAGACGGCCGTATACCGCGTC TATCTGTGGAGGAAGGGCCAGGCCAGGGCCAAGCAAAAAGCCGTGGTCGAGACTCAGGAAGTGGTCAATACCCCG ACGGAAGAAAACCACGCCGGAGACCGCGTCCAAATCCCCAGCGACTCAGACGACACCGAAAAGCGGTGCAGCGCG GCTCCCTGCGCGGACGGACACTGCGTCACCCAACTGGCCGAGACAGAGCGCAGCGCGAAGCCAGGAGGCGAGACC AAGCGGAGACGCAGGCCGCGCGTACAGACGACGCTGAACTTGTCGACGGGGGGGACTTTTGCAGAGTGCAAGATC TGCAATACGGTTTGGAATCCTCTGTTTCCGGACGATGTCAGCTACCACACGCGGCGTCACGCCAAGGTGACGGCG AGGGCGAGGAGAAAGAAAGACGATTATCTTTAG |
| Transcript | >Ophcf2|02157 ATGGTGCTCCTCACCATGACGCCGCCCATGGTTGAGGGCCTGGACAGCCTGAGAACGGCTGATGGCAACGAAGAT GACGTTGGCTCCGAGCCCTCGCTTGCCCAGCCTGCAGTCGGCAAGCCAATATCTCACGCCCAGGTGGTCCATCTC TGGACAGCTCTTCAGTCATCGCAGCTTTCTCCCTGCAGTCTGGAAAGACTCCTCCGGGGCTCTCGCGTCTTTGTG CCGCCGCCGCCGCCAAAGCCCGAGCCCTCGGAAGAATACAAGGCGCTCATGGCCCGCCTTCGCCGAGAAGAGGCC GCCCGCGCTTACCAGCGAATGGTCAGTCCGACTCCGCCGACCGAGAGCTTCTACGACCGCTTCCCGACCGCTGCG GTGAACCGTCCGACACACGCGTCCGATCTGGGAGACGAGGACGACGTGTCGTACGCAGAGGTGCAGCGACAGGTC ATGCTCATCATCAACTTTCTCGTGAGTATCCTGGGCGTCGCGGGGACCTTGTGGGTGGCGGCGCGATACTGGAGT CTCCCTGCGCGGCTGCTTCTCGCCCTGAGTGGCGCCATCGTCGTCGCCGTAGCCGAGACGGCCGTATACCGCGTC TATCTGTGGAGGAAGGGCCAGGCCAGGGCCAAGCAAAAAGCCGTGGTCGAGACTCAGGAAGTGGTCAATACCCCG ACGGAAGAAAACCACGCCGGAGACCGCGTCCAAATCCCCAGCGACTCAGACGACACCGAAAAGCGGTGCAGCGCG GCTCCCTGCGCGGACGGACACTGCGTCACCCAACTGGCCGAGACAGAGCGCAGCGCGAAGCCAGGAGGCGAGACC AAGCGGAGACGCAGGCCGCGCGTACAGACGACGCTGAACTTGTCGACGGGGGGGACTTTTGCAGAGTGCAAGATC TGCAATACGGTTTGGAATCCTCTGTTTCCGGACGATGTCAGCTACCACACGCGGCGTCACGCCAAGGTGACGGCG AGGGCGAGGAGAAAGAAAGACGATTATCTTTAG |
| Gene | >Ophcf2|02157 ATGGTGCTCCTCACCATGACGCCGCCCATGGTTGAGGGCCTGGACAGCCTGAGAACGGCTGATGGCAACGAAGAT GACGTTGGCTCCGAGCCCTCGCTTGCCCAGCCTGCAGTCGGCAAGCCAATATCTCACGCCCAGGTGGTCCATCTC TGGACAGCTCTTCAGTCATCGCAGCTTTCTCCCTGCAGTCTGGAAAGACTCCTCCGGGGCTCTCGCGTCTTTGTG CCGCCGCCGCCGCCAAAGCCCGAGCCCGTCCGTCATGTCCTCTCCTCTGCGTCAGACGAGCACTGACCCACTGCA GTCGGAAGAATACAAGGCGCTCATGGCCCGCCTTCGCCGAGAAGAGGCCGCCCGCGCTTACCAGCGAATGGTCAG TCCGACTCCGCCGACCGAGAGCTTCTACGACCGCTTCCCGACCGCTGCGGTGAACCGTCCGACACACGCGTCCGA TCTGGGAGACGAGGACGACGTGTCGTACGCAGAGGTGCAGCGACAGGTCATGCTCATCATCAACTTTCTCGTGAG TATCCTGGGCGTCGCGGGGACCTTGTGGGTGGCGGCGCGATACTGGAGTCTCCCTGCGCGGCTGCTTCTCGCCCT GAGTGGCGCCATCGTCGTCGCCGTAGCCGAGACGGCCGTATACCGCGTCTATCTGTGGAGGAAGGGCCAGGCCAG GGCCAAGCAAAAAGCCGTGGTCGAGACTCAGGAAGTGGTCAATACGTGGGTGGTCGGGAAAGATGCCTGCCAAGA CGACGACTCGTCTGTTCTTCTGCCAGCCAGACAGGATGACATGGATAGTACGGCCCGGAGGCGAAGACCAGCGGC GACTGAGCCTTTGGAGGCAGAGGTGAAAGGAGCTTGAGTATTTGTTTTCGCGTAGGCGCCGCCATTGTACGACCT GGCCGTGATTTTCTGGCTGTCACCAGCATCGTAGACATGTCTGTCGTATGTATTCGTTGGCGCTAAAAGAGGAGC AAGGGCCGCTCAGCGATGCCGTCTCTGACAACGTTTACACATGGTGTACGGATATGATGTAAAGTATGTACAAAT AAGACACACTCACTTCGCACATCGAGCGTCATGTGATCGCGCGTCGCGTTTTTCTCAGTCTATTCGCACGCGTGA CTTGGTTTTCGCAACACCTCTTTCGCGATAAGCTCTGGACAGCACAAGATTCGTGGAAAGACTCTCTTCAAACAA GCCGAGCCGTAAACGGCCGAAAGACGGCAAACAATACGAATCTCTCTTTAACCGCATTCTGGCCTGGCAGGACGA AGCAAATCATGTCTAGCTTCCCGTCTCGAAGACGCGACGGGCCTTTGCGCACCTATGGCAAGCGATCAGCCTCTT CCAATGCGCCAGGACAGCCCTCTCCCAAGAGACAGATTATCGAAGCGAAGGAAAATAAATCTCTTGACGCGGGTG CCACCTCGATCACGAAACCTGGTCCTGCTTCCGGCGTCGCGCATGTCACATACCAACCGGCTCAAGCCAACGGGA AGCTGTCGACACGTCCGTCGATTCGCGCATACTTTAAGCCGGTGCTGCGTGCGAAGGTCGACGACTTGCCGAAGC CGGACTCTTCTGACGAACCGTCTGGCTCTCTTCGCTCGACTTACGCGCACGAAAGAAGACGACCGCGTCTACTCA GGCTTCGACCGACGACATCCAGCCCGACGGAAGAAAACCACGCCGGAGACCGCGTCCAAATCCCCAGCGACTCAG ACGACACCGAAAAGCGGTGCAGCGCGGCTCCCTGCGCGGACGGACACTGCGTCACCCAACTGGCCGAGACAGAGC GCAGCGCGAAGCCAGGAGGCGAGACCAAGCGGAGACGCAGGCCGCGCGTACAGACGACGCTGAACTTGTCGACGG GGGGGACTTTTGCAGAGTGCAAGATCTGCAATACGGTTTGGAATCCTCTGTTTCCGGACGATGTCAGCTACCACA CGCGGCGTCACGCCAAGGTGACGGCGAGGGCGAGGAGAAAGAAAGACGATTATCTTTAG |