Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|02092
Gene name
Locationscaffold_02:2583036..2583656
Strand+
Gene length (bp)620
Transcript length (bp)477
Coding sequence length (bp)477
Protein length (aa) 159

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01284 MARVEL Membrane-associating domain 6.2E-11 16 129

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0005575 cellular_component No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.5

Transmembrane Domains

Domain # Start End Length
1 7 26 19
2 41 63 22
3 70 89 19
4 115 137 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|02092
MGLLRIVVMGNHLAVFISSVIVTGLVSHFLQRYSHRGTHIVYTEVIAVITVALYMFGMILPLFDFYEGFLMPVNL
AFSYLWLTSFIFAAQDWSGDRCVLAPPGRGECGKKHTIEAFTFLAFFFLLCNTIAEALLWGLHRRDFSFFRKSGS
HRASVTEA*
Coding >Ophcf2|02092
ATGGGCTTGCTTCGGATCGTGGTCATGGGCAACCACCTGGCCGTCTTCATCTCGTCCGTGATAGTCACGGGTCTG
GTATCACACTTTCTGCAGCGGTACTCTCACCGTGGCACGCACATCGTCTACACGGAAGTCATCGCCGTCATCACT
GTCGCCCTATACATGTTCGGCATGATCCTCCCCCTCTTCGACTTCTACGAGGGCTTCCTCATGCCCGTGAACCTG
GCCTTCTCCTACCTGTGGCTCACGTCCTTCATCTTCGCCGCGCAAGACTGGAGCGGCGACCGGTGTGTCTTGGCG
CCGCCCGGCCGAGGCGAGTGCGGCAAGAAACACACCATCGAGGCCTTTACCTTCCTAGCCTTCTTCTTCCTGTTG
TGCAATACCATTGCCGAGGCCCTTCTTTGGGGGCTGCATCGGAGGGACTTTTCCTTTTTCAGGAAGTCTGGTTCT
CACCGGGCATCTGTCACGGAGGCTTGA
Transcript >Ophcf2|02092
ATGGGCTTGCTTCGGATCGTGGTCATGGGCAACCACCTGGCCGTCTTCATCTCGTCCGTGATAGTCACGGGTCTG
GTATCACACTTTCTGCAGCGGTACTCTCACCGTGGCACGCACATCGTCTACACGGAAGTCATCGCCGTCATCACT
GTCGCCCTATACATGTTCGGCATGATCCTCCCCCTCTTCGACTTCTACGAGGGCTTCCTCATGCCCGTGAACCTG
GCCTTCTCCTACCTGTGGCTCACGTCCTTCATCTTCGCCGCGCAAGACTGGAGCGGCGACCGGTGTGTCTTGGCG
CCGCCCGGCCGAGGCGAGTGCGGCAAGAAACACACCATCGAGGCCTTTACCTTCCTAGCCTTCTTCTTCCTGTTG
TGCAATACCATTGCCGAGGCCCTTCTTTGGGGGCTGCATCGGAGGGACTTTTCCTTTTTCAGGAAGTCTGGTTCT
CACCGGGCATCTGTCACGGAGGCTTGA
Gene >Ophcf2|02092
ATGGGCTTGCTTCGGATCGTGGTCATGGGCAACCACCTGGCCGTCTTCATCTCGTCCGTGATAGTCACGGGTCTG
GTATCACACTTTCTGCAGCGGTACTCTCACCGTGGCACGCACATCGTCTACACGGAAGTCATCGTCAGTCACGAC
ACTCACTTACATAGACTCACAACCTTTGTCAGGCTGACCCCGTCTTCTCCTGGATACCATGTAGGCCGTCATCAC
TGTCGCCCTATACATGTTCGGCATGATCCTCCCCCTCTTCGACTTCTACGAGGGCTTCCTCATGCCCGTGAACCT
GGCCTTCTCCTACCTGTGGCTCACGTCCTTCATCTTCGCCGCGCAAGACTGGAGCGGCGACCGGTGTGTCTTGGC
GCCGCCCGGCCGAGGCGAGTGCGGCAAGAAACACACCATCGAGGCCTTTACCTTCCTAGCCTTGTAAGTCCCTCG
GGCATCGTGAGAAGTTATCTTGGTGTTTTGTCATTGCTGACGAGTTGGCGCTAAGCTTCTTCCTGTTGTGCAATA
CCATTGCCGAGGCCCTTCTTTGGGGGCTGCATCGGAGGGACTTTTCCTTTTTCAGGAAGTCTGGTTCTCACCGGG
CATCTGTCACGGAGGCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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