Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|02066
Gene name
Location	scaffold_02:2513817..2514947
Strand	-
Gene length (bp)	1130
Transcript length (bp)	1005
Coding sequence length (bp)	1005
Protein length (aa)	335

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00107	ADH_zinc_N	Zinc-binding dehydrogenase	3.2E-25	156	282
PF13602	ADH_zinc_N_2	Zinc-binding dehydrogenase	4.4E-22	190	330
PF08240	ADH_N	Alcohol dehydrogenase GroES-like domain	7.9E-08	31	91

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	7.21	2.18	12.24
Alive	In ants, during behavior modification	5.87	1.57	10.17
Dead	In ants, recently dead	8.23	2.59	13.87

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.551341	no
Alive	Dead	0.216417	no
Dead	Fungus	0.701255	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|02066 MMKAVDIRGGSGDRHALFLNPDFPKPTPTRGQALVRVRAFGINRMDILQRRGAYPVPAGASAVLGVEFSGVVEAL GDHHDNTTLKVGQHVLGLVYGGAYAEYVVVSYRMLIHKPSTLSWVQAAALPEAWITAIQALHRVLEFVPGRSILW HAGASGVSVAGIQLARRAGASRVFATAGSDEKCRFIVHRLGADAAFNYKTSDWAAAVREATDGQGVDYLVDFVGG GDYFNKNLDVCARDARIVMLGLLGGPKVPDANISQILAKRIRIEGSTLRSRDEDYQGWLRDKLETYLPDFEAGRL EVIIDKALPWEQVQDAHKHMEEAQNSGKIVCTIS*
Coding	>Ophcf2\|02066 ATGATGAAAGCAGTCGACATCCGAGGCGGCAGCGGTGACCGCCACGCCCTCTTCCTCAACCCCGACTTTCCGAAG CCCACCCCCACCCGGGGTCAAGCCCTCGTCCGGGTTCGAGCCTTCGGCATAAACCGCATGGACATTCTCCAGCGA CGAGGCGCGTATCCCGTCCCCGCGGGCGCCTCGGCCGTTCTGGGCGTCGAGTTCAGCGGCGTGGTCGAAGCCCTC GGCGATCATCATGATAACACCACCTTGAAAGTGGGCCAACATGTCCTTGGCCTCGTCTATGGAGGAGCCTATGCA GAGTACGTCGTCGTCAGCTACAGGATGCTCATTCATAAGCCCTCCACCTTGAGTTGGGTGCAGGCCGCCGCCTTG CCCGAAGCCTGGATCACGGCCATCCAGGCTCTGCACCGCGTGCTGGAGTTCGTGCCCGGCCGCTCCATTCTCTGG CATGCCGGCGCGTCTGGCGTCTCCGTTGCCGGCATCCAGCTCGCTCGCCGCGCTGGTGCCTCCCGCGTCTTCGCA ACCGCGGGCTCCGATGAAAAGTGTCGTTTCATCGTCCATCGCCTCGGCGCCGATGCCGCTTTCAACTACAAGACG TCTGACTGGGCTGCTGCCGTTCGCGAAGCCACCGACGGCCAGGGCGTCGATTACCTCGTCGACTTCGTTGGTGGA GGCGATTACTTCAATAAGAACCTCGACGTTTGCGCCAGGGATGCCCGCATTGTTATGCTCGGATTACTCGGCGGA CCAAAGGTCCCTGACGCCAATATCTCGCAGATCCTCGCCAAGCGCATTCGCATCGAGGGCAGCACCTTGCGCAGT CGTGACGAGGATTATCAGGGCTGGCTGCGCGACAAGCTCGAGACGTACCTGCCAGATTTTGAGGCCGGTCGCCTT GAGGTTATCATCGACAAGGCTCTGCCTTGGGAACAGGTACAGGATGCGCACAAGCACATGGAGGAGGCCCAGAAC TCGGGCAAGATTGTGTGCACCATTTCTTGA
Transcript	>Ophcf2\|02066 ATGATGAAAGCAGTCGACATCCGAGGCGGCAGCGGTGACCGCCACGCCCTCTTCCTCAACCCCGACTTTCCGAAG CCCACCCCCACCCGGGGTCAAGCCCTCGTCCGGGTTCGAGCCTTCGGCATAAACCGCATGGACATTCTCCAGCGA CGAGGCGCGTATCCCGTCCCCGCGGGCGCCTCGGCCGTTCTGGGCGTCGAGTTCAGCGGCGTGGTCGAAGCCCTC GGCGATCATCATGATAACACCACCTTGAAAGTGGGCCAACATGTCCTTGGCCTCGTCTATGGAGGAGCCTATGCA GAGTACGTCGTCGTCAGCTACAGGATGCTCATTCATAAGCCCTCCACCTTGAGTTGGGTGCAGGCCGCCGCCTTG CCCGAAGCCTGGATCACGGCCATCCAGGCTCTGCACCGCGTGCTGGAGTTCGTGCCCGGCCGCTCCATTCTCTGG CATGCCGGCGCGTCTGGCGTCTCCGTTGCCGGCATCCAGCTCGCTCGCCGCGCTGGTGCCTCCCGCGTCTTCGCA ACCGCGGGCTCCGATGAAAAGTGTCGTTTCATCGTCCATCGCCTCGGCGCCGATGCCGCTTTCAACTACAAGACG TCTGACTGGGCTGCTGCCGTTCGCGAAGCCACCGACGGCCAGGGCGTCGATTACCTCGTCGACTTCGTTGGTGGA GGCGATTACTTCAATAAGAACCTCGACGTTTGCGCCAGGGATGCCCGCATTGTTATGCTCGGATTACTCGGCGGA CCAAAGGTCCCTGACGCCAATATCTCGCAGATCCTCGCCAAGCGCATTCGCATCGAGGGCAGCACCTTGCGCAGT CGTGACGAGGATTATCAGGGCTGGCTGCGCGACAAGCTCGAGACGTACCTGCCAGATTTTGAGGCCGGTCGCCTT GAGGTTATCATCGACAAGGCTCTGCCTTGGGAACAGGTACAGGATGCGCACAAGCACATGGAGGAGGCCCAGAAC TCGGGCAAGATTGTGTGCACCATTTCTTGA
Gene	>Ophcf2\|02066 ATGATGAAAGCAGTCGGTAGTAATCCCCAGCAAACAAACATGCCTTTCATACATACACACATACGCAAATACCTT CCACCAACAACCAAGAAATCCCTCAACCACAACAATCCCGCAATGCCACTGACCGCCCCCGCGCAGACATCCGAG GCGGCAGCGGTGACCGCCACGCCCTCTTCCTCAACCCCGACTTTCCGAAGCCCACCCCCACCCGGGGTCAAGCCC TCGTCCGGGTTCGAGCCTTCGGCATAAACCGCATGGACATTCTCCAGCGACGAGGCGCGTATCCCGTCCCCGCGG GCGCCTCGGCCGTTCTGGGCGTCGAGTTCAGCGGCGTGGTCGAAGCCCTCGGCGATCATCATGATAACACCACCT TGAAAGTGGGCCAACATGTCCTTGGCCTCGTCTATGGAGGAGCCTATGCAGAGTACGTCGTCGTCAGCTACAGGA TGCTCATTCATAAGCCCTCCACCTTGAGTTGGGTGCAGGCCGCCGCCTTGCCCGAAGCCTGGATCACGGCCATCC AGGCTCTGCACCGCGTGCTGGAGTTCGTGCCCGGCCGCTCCATTCTCTGGCATGCCGGCGCGTCTGGCGTCTCCG TTGCCGGCATCCAGCTCGCTCGCCGCGCTGGTGCCTCCCGCGTCTTCGCAACCGCGGGCTCCGATGAAAAGTGTC GTTTCATCGTCCATCGCCTCGGCGCCGATGCCGCTTTCAACTACAAGACGTCTGACTGGGCTGCTGCCGTTCGCG AAGCCACCGACGGCCAGGGCGTCGATTACCTCGTCGACTTCGTTGGTGGAGGCGATTACTTCAATAAGAACCTCG ACGTTTGCGCCAGGGATGCCCGCATTGTTATGCTCGGATTACTCGGCGGACCAAAGGTCCCTGACGCCAATATCT CGCAGATCCTCGCCAAGCGCATTCGCATCGAGGGCAGCACCTTGCGCAGTCGTGACGAGGATTATCAGGGCTGGC TGCGCGACAAGCTCGAGACGTACCTGCCAGATTTTGAGGCCGGTCGCCTTGAGGTTATCATCGACAAGGCTCTGC CTTGGGAACAGGTACAGGATGCGCACAAGCACATGGAGGAGGCCCAGAACTCGGGCAAGATTGTGTGCACCATTT CTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail