© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02023 |
| Gene name | |
| Location | scaffold_02:2395960..2398735 |
| Strand | + |
| Gene length (bp) | 2775 |
| Transcript length (bp) | 2775 |
| Coding sequence length (bp) | 2775 |
| Protein length (aa) | 925 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06424 | PRP1_N | PRP1 splicing factor, N-terminal | 2.3E-49 | 12 | 170 |
| PF13428 | TPR_14 | Tetratricopeptide repeat | 2.4E-05 | 593 | 632 |
| PF14559 | TPR_19 | Tetratricopeptide repeat | 8.8E-06 | 604 | 662 |
| PF13432 | TPR_16 | Tetratricopeptide repeat | 1.5E-07 | 672 | 726 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 2.7E-03 | 694 | 720 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0000398 | mRNA splicing, via spliceosome | Yes |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0006397 | mRNA processing | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:0009987 | cellular process | No |
| GO:0008152 | metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0000375 | RNA splicing, via transesterification reactions | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0005488 | binding | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0008380 | RNA splicing | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0016071 | mRNA metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 41.62 | 23.73 | 59.51 |
| Alive | In ants, during behavior modification | 51.66 | 28.85 | 74.47 |
| Dead | In ants, recently dead | 61.93 | 34.44 | 89.41 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.285045 | no |
| Alive | Dead | 0.296777 | no |
| Dead | Fungus | 0.036100 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02023 MTTRRDFLSQPAPENYVAGLGRGATGFTTRSDLGPARDGPSEDQIKEALAKRAAQLGIAPDGKDKKKGKDDAEAD DDDGRFQDPDNEVGLFAGGVYDKEDEEADRIWEWVDERMDRRKRQREERENAERSEYERNNPKIQQQFTDLKRAL STVTDDEWANLPEVGDLTGKNRRSKQALRQRFYAVPDSVLAAARDSTEMSTTVADEAGGDGTMTNFAEIGAARDK VLKSRLEQASQSSVTGGEGGSSTSIDPQGYITSLNKMQSGAQAQVGDVNRVRELLQSVVKTNPNNALGWIAAARL EELAGKTVAARKTIDKGCAQCPKSEDAWLENIRFNSESANAKVIARRALESNPHSVRLWVEAMKLETLTSNKKRV VRQALDHVPESEALWKEAVNLEEDAKDAKLLLAKATDLIPLSVDLWLALARLETPDKAQKVLNRARKAVPTSHEI WIAAARLQEQLGQGHKVNVMKRAVQVLAKEMAMPSREDWIVEAEKCEEDGAPVTCEAIVRETLSWGLEEDNERKD IWMEEAKASINRGRYETARAIYAHVLRHFSGSRTAWMAAADLERTHGTRESLWALLDKAVEKCSNSSELWMTLAR EKWQAGEVDGARLVLKRAFQHNPNNEDIWLSAVKLESDNGDEAQARHLLAVARDQAPTDRVWLKAVVFERVMGQT EAALDLVLQALDRFPSAPKLWMLKGQIYEDLGRDDAAREAYAAGVKAVPGSVPLWLLHARLEERTGKLVKARSIL DRARLAAPLSPDIWCESVRLERRAGNMAQARNLMARAQKAVSRSGLLWVEQIWHLEPRTQRKQRSLEAIKKADND AILFVTVARIFWADRRLDKAQNWFEKALVLDPDCGDSWAWYHRFLCQHGTHEKRAELVAKCVQNEPRHGEVWASV AKRPRNAEKTVAEKLELVAAELED* |
| Coding | >Ophcf2|02023 ATGACGACTCGACGCGATTTCCTGAGCCAGCCGGCGCCGGAAAACTACGTGGCCGGTCTTGGTCGGGGCGCGACC GGCTTCACGACTCGATCAGATCTGGGTCCAGCCCGTGATGGCCCCAGCGAGGATCAGATCAAAGAGGCTCTCGCC AAACGAGCGGCTCAGCTGGGCATCGCGCCGGACGGAAAGGATAAGAAAAAGGGCAAGGATGACGCCGAGGCGGAT GACGATGACGGCCGGTTTCAAGACCCGGATAACGAGGTGGGCCTCTTCGCCGGCGGCGTCTACGACAAGGAAGAC GAGGAGGCGGATCGTATCTGGGAATGGGTCGATGAGCGAATGGACCGGCGGAAGCGGCAGCGGGAGGAGCGCGAA AACGCCGAGCGGAGCGAGTACGAGCGTAACAATCCCAAGATCCAGCAGCAGTTTACCGACCTCAAGCGAGCCCTT TCGACCGTCACCGATGATGAGTGGGCCAACCTCCCCGAAGTCGGCGACCTGACGGGCAAGAATCGGCGTAGCAAG CAGGCGCTTCGACAACGCTTCTACGCCGTGCCCGACAGCGTGCTGGCCGCCGCCCGCGACTCGACGGAGATGAGT ACGACGGTGGCCGACGAGGCCGGCGGTGACGGCACCATGACCAACTTCGCCGAGATCGGGGCCGCGCGCGACAAG GTGCTCAAGTCGAGGCTGGAACAGGCGTCGCAGTCGTCGGTGACGGGGGGCGAAGGCGGCAGCTCGACCAGCATC GATCCGCAGGGATACATCACCAGCCTCAACAAGATGCAGAGCGGGGCGCAGGCGCAAGTGGGCGACGTCAACCGC GTGCGGGAGCTGCTGCAGTCGGTTGTCAAGACGAACCCCAACAATGCCCTCGGCTGGATCGCGGCCGCTCGCCTC GAGGAGTTGGCGGGCAAGACGGTGGCAGCGCGCAAGACGATTGATAAGGGCTGCGCTCAGTGTCCCAAGAGCGAG GACGCCTGGCTCGAGAATATCCGGTTCAATAGCGAGTCGGCCAATGCAAAAGTCATCGCGCGGCGCGCCCTCGAA TCCAACCCGCATTCGGTCCGGCTATGGGTCGAGGCCATGAAGCTGGAGACGCTGACGAGCAACAAGAAGAGGGTG GTGCGTCAGGCCCTCGACCACGTGCCCGAGTCGGAGGCGCTGTGGAAGGAGGCTGTCAACCTGGAGGAGGACGCC AAGGACGCGAAGCTGCTGCTGGCCAAGGCGACGGATCTGATACCGCTGTCGGTCGACCTGTGGCTGGCGCTGGCC CGGCTGGAGACGCCTGACAAGGCGCAAAAGGTGCTGAACCGGGCGCGCAAGGCCGTGCCGACGTCGCACGAGATC TGGATCGCGGCGGCGCGGCTACAGGAGCAGCTGGGTCAGGGCCACAAGGTCAACGTGATGAAGAGGGCGGTGCAG GTGTTGGCCAAGGAAATGGCCATGCCGTCGCGCGAGGATTGGATCGTCGAGGCGGAGAAATGCGAGGAGGATGGG GCGCCGGTGACGTGCGAGGCCATCGTGCGCGAGACACTGAGCTGGGGGCTGGAGGAGGACAACGAGCGCAAGGAC ATATGGATGGAGGAGGCCAAGGCCAGCATCAACAGGGGCAGATACGAGACGGCGAGGGCCATCTACGCCCACGTG CTGCGTCATTTCTCAGGCAGCCGGACGGCCTGGATGGCGGCCGCGGACCTGGAGCGGACGCACGGCACGCGCGAG TCGCTGTGGGCGCTGCTGGACAAGGCGGTGGAGAAGTGCAGCAACAGCTCGGAGCTGTGGATGACGCTGGCCCGC GAGAAGTGGCAGGCCGGCGAGGTCGACGGCGCCCGGCTGGTGCTCAAGAGGGCATTCCAGCACAACCCCAACAAC GAGGATATCTGGCTGTCGGCCGTCAAGCTCGAGTCGGACAACGGCGATGAAGCCCAGGCGCGTCACCTGCTGGCC GTGGCCCGGGACCAGGCGCCGACGGACCGCGTCTGGCTCAAGGCCGTCGTCTTCGAGCGCGTCATGGGCCAGACG GAGGCGGCGCTGGATCTGGTGCTGCAGGCCCTCGATCGATTCCCCTCTGCGCCGAAGCTGTGGATGCTCAAGGGT CAGATATACGAGGACCTGGGCCGTGACGACGCGGCGCGCGAGGCCTACGCTGCCGGCGTCAAGGCCGTTCCCGGC TCCGTTCCCCTCTGGCTGCTCCACGCCCGGCTCGAGGAGCGGACGGGCAAGCTGGTCAAGGCGAGGTCCATCCTC GACCGCGCCCGGCTCGCGGCCCCGCTCAGCCCGGACATCTGGTGCGAGTCGGTCCGGCTCGAGCGGCGGGCGGGC AACATGGCCCAGGCGAGGAACCTGATGGCGCGCGCTCAGAAGGCCGTGTCCCGGAGCGGCCTCTTATGGGTCGAG CAGATCTGGCACCTCGAGCCGCGGACGCAGCGGAAGCAGCGAAGTCTCGAGGCCATCAAGAAGGCAGACAACGAC GCCATCCTCTTCGTCACCGTCGCCCGCATCTTCTGGGCTGACCGCCGGCTTGACAAGGCTCAGAACTGGTTCGAG AAGGCGCTCGTCCTCGATCCGGACTGCGGCGATAGCTGGGCTTGGTATCATCGTTTCCTGTGTCAGCATGGGACG CACGAGAAGCGCGCCGAGCTGGTGGCCAAGTGTGTGCAGAACGAGCCTCGCCACGGGGAGGTGTGGGCTTCGGTG GCCAAGAGACCGCGGAATGCTGAAAAGACGGTTGCCGAGAAGTTGGAGTTGGTGGCTGCCGAGCTCGAGGATTGA |
| Transcript | >Ophcf2|02023 ATGACGACTCGACGCGATTTCCTGAGCCAGCCGGCGCCGGAAAACTACGTGGCCGGTCTTGGTCGGGGCGCGACC GGCTTCACGACTCGATCAGATCTGGGTCCAGCCCGTGATGGCCCCAGCGAGGATCAGATCAAAGAGGCTCTCGCC AAACGAGCGGCTCAGCTGGGCATCGCGCCGGACGGAAAGGATAAGAAAAAGGGCAAGGATGACGCCGAGGCGGAT GACGATGACGGCCGGTTTCAAGACCCGGATAACGAGGTGGGCCTCTTCGCCGGCGGCGTCTACGACAAGGAAGAC GAGGAGGCGGATCGTATCTGGGAATGGGTCGATGAGCGAATGGACCGGCGGAAGCGGCAGCGGGAGGAGCGCGAA AACGCCGAGCGGAGCGAGTACGAGCGTAACAATCCCAAGATCCAGCAGCAGTTTACCGACCTCAAGCGAGCCCTT TCGACCGTCACCGATGATGAGTGGGCCAACCTCCCCGAAGTCGGCGACCTGACGGGCAAGAATCGGCGTAGCAAG CAGGCGCTTCGACAACGCTTCTACGCCGTGCCCGACAGCGTGCTGGCCGCCGCCCGCGACTCGACGGAGATGAGT ACGACGGTGGCCGACGAGGCCGGCGGTGACGGCACCATGACCAACTTCGCCGAGATCGGGGCCGCGCGCGACAAG GTGCTCAAGTCGAGGCTGGAACAGGCGTCGCAGTCGTCGGTGACGGGGGGCGAAGGCGGCAGCTCGACCAGCATC GATCCGCAGGGATACATCACCAGCCTCAACAAGATGCAGAGCGGGGCGCAGGCGCAAGTGGGCGACGTCAACCGC GTGCGGGAGCTGCTGCAGTCGGTTGTCAAGACGAACCCCAACAATGCCCTCGGCTGGATCGCGGCCGCTCGCCTC GAGGAGTTGGCGGGCAAGACGGTGGCAGCGCGCAAGACGATTGATAAGGGCTGCGCTCAGTGTCCCAAGAGCGAG GACGCCTGGCTCGAGAATATCCGGTTCAATAGCGAGTCGGCCAATGCAAAAGTCATCGCGCGGCGCGCCCTCGAA TCCAACCCGCATTCGGTCCGGCTATGGGTCGAGGCCATGAAGCTGGAGACGCTGACGAGCAACAAGAAGAGGGTG GTGCGTCAGGCCCTCGACCACGTGCCCGAGTCGGAGGCGCTGTGGAAGGAGGCTGTCAACCTGGAGGAGGACGCC AAGGACGCGAAGCTGCTGCTGGCCAAGGCGACGGATCTGATACCGCTGTCGGTCGACCTGTGGCTGGCGCTGGCC CGGCTGGAGACGCCTGACAAGGCGCAAAAGGTGCTGAACCGGGCGCGCAAGGCCGTGCCGACGTCGCACGAGATC TGGATCGCGGCGGCGCGGCTACAGGAGCAGCTGGGTCAGGGCCACAAGGTCAACGTGATGAAGAGGGCGGTGCAG GTGTTGGCCAAGGAAATGGCCATGCCGTCGCGCGAGGATTGGATCGTCGAGGCGGAGAAATGCGAGGAGGATGGG GCGCCGGTGACGTGCGAGGCCATCGTGCGCGAGACACTGAGCTGGGGGCTGGAGGAGGACAACGAGCGCAAGGAC ATATGGATGGAGGAGGCCAAGGCCAGCATCAACAGGGGCAGATACGAGACGGCGAGGGCCATCTACGCCCACGTG CTGCGTCATTTCTCAGGCAGCCGGACGGCCTGGATGGCGGCCGCGGACCTGGAGCGGACGCACGGCACGCGCGAG TCGCTGTGGGCGCTGCTGGACAAGGCGGTGGAGAAGTGCAGCAACAGCTCGGAGCTGTGGATGACGCTGGCCCGC GAGAAGTGGCAGGCCGGCGAGGTCGACGGCGCCCGGCTGGTGCTCAAGAGGGCATTCCAGCACAACCCCAACAAC GAGGATATCTGGCTGTCGGCCGTCAAGCTCGAGTCGGACAACGGCGATGAAGCCCAGGCGCGTCACCTGCTGGCC GTGGCCCGGGACCAGGCGCCGACGGACCGCGTCTGGCTCAAGGCCGTCGTCTTCGAGCGCGTCATGGGCCAGACG GAGGCGGCGCTGGATCTGGTGCTGCAGGCCCTCGATCGATTCCCCTCTGCGCCGAAGCTGTGGATGCTCAAGGGT CAGATATACGAGGACCTGGGCCGTGACGACGCGGCGCGCGAGGCCTACGCTGCCGGCGTCAAGGCCGTTCCCGGC TCCGTTCCCCTCTGGCTGCTCCACGCCCGGCTCGAGGAGCGGACGGGCAAGCTGGTCAAGGCGAGGTCCATCCTC GACCGCGCCCGGCTCGCGGCCCCGCTCAGCCCGGACATCTGGTGCGAGTCGGTCCGGCTCGAGCGGCGGGCGGGC AACATGGCCCAGGCGAGGAACCTGATGGCGCGCGCTCAGAAGGCCGTGTCCCGGAGCGGCCTCTTATGGGTCGAG CAGATCTGGCACCTCGAGCCGCGGACGCAGCGGAAGCAGCGAAGTCTCGAGGCCATCAAGAAGGCAGACAACGAC GCCATCCTCTTCGTCACCGTCGCCCGCATCTTCTGGGCTGACCGCCGGCTTGACAAGGCTCAGAACTGGTTCGAG AAGGCGCTCGTCCTCGATCCGGACTGCGGCGATAGCTGGGCTTGGTATCATCGTTTCCTGTGTCAGCATGGGACG CACGAGAAGCGCGCCGAGCTGGTGGCCAAGTGTGTGCAGAACGAGCCTCGCCACGGGGAGGTGTGGGCTTCGGTG GCCAAGAGACCGCGGAATGCTGAAAAGACGGTTGCCGAGAAGTTGGAGTTGGTGGCTGCCGAGCTCGAGGATTGA |
| Gene | >Ophcf2|02023 ATGACGACTCGACGCGATTTCCTGAGCCAGCCGGCGCCGGAAAACTACGTGGCCGGTCTTGGTCGGGGCGCGACC GGCTTCACGACTCGATCAGATCTGGGTCCAGCCCGTGATGGCCCCAGCGAGGATCAGATCAAAGAGGCTCTCGCC AAACGAGCGGCTCAGCTGGGCATCGCGCCGGACGGAAAGGATAAGAAAAAGGGCAAGGATGACGCCGAGGCGGAT GACGATGACGGCCGGTTTCAAGACCCGGATAACGAGGTGGGCCTCTTCGCCGGCGGCGTCTACGACAAGGAAGAC GAGGAGGCGGATCGTATCTGGGAATGGGTCGATGAGCGAATGGACCGGCGGAAGCGGCAGCGGGAGGAGCGCGAA AACGCCGAGCGGAGCGAGTACGAGCGTAACAATCCCAAGATCCAGCAGCAGTTTACCGACCTCAAGCGAGCCCTT TCGACCGTCACCGATGATGAGTGGGCCAACCTCCCCGAAGTCGGCGACCTGACGGGCAAGAATCGGCGTAGCAAG CAGGCGCTTCGACAACGCTTCTACGCCGTGCCCGACAGCGTGCTGGCCGCCGCCCGCGACTCGACGGAGATGAGT ACGACGGTGGCCGACGAGGCCGGCGGTGACGGCACCATGACCAACTTCGCCGAGATCGGGGCCGCGCGCGACAAG GTGCTCAAGTCGAGGCTGGAACAGGCGTCGCAGTCGTCGGTGACGGGGGGCGAAGGCGGCAGCTCGACCAGCATC GATCCGCAGGGATACATCACCAGCCTCAACAAGATGCAGAGCGGGGCGCAGGCGCAAGTGGGCGACGTCAACCGC GTGCGGGAGCTGCTGCAGTCGGTTGTCAAGACGAACCCCAACAATGCCCTCGGCTGGATCGCGGCCGCTCGCCTC GAGGAGTTGGCGGGCAAGACGGTGGCAGCGCGCAAGACGATTGATAAGGGCTGCGCTCAGTGTCCCAAGAGCGAG GACGCCTGGCTCGAGAATATCCGGTTCAATAGCGAGTCGGCCAATGCAAAAGTCATCGCGCGGCGCGCCCTCGAA TCCAACCCGCATTCGGTCCGGCTATGGGTCGAGGCCATGAAGCTGGAGACGCTGACGAGCAACAAGAAGAGGGTG GTGCGTCAGGCCCTCGACCACGTGCCCGAGTCGGAGGCGCTGTGGAAGGAGGCTGTCAACCTGGAGGAGGACGCC AAGGACGCGAAGCTGCTGCTGGCCAAGGCGACGGATCTGATACCGCTGTCGGTCGACCTGTGGCTGGCGCTGGCC CGGCTGGAGACGCCTGACAAGGCGCAAAAGGTGCTGAACCGGGCGCGCAAGGCCGTGCCGACGTCGCACGAGATC TGGATCGCGGCGGCGCGGCTACAGGAGCAGCTGGGTCAGGGCCACAAGGTCAACGTGATGAAGAGGGCGGTGCAG GTGTTGGCCAAGGAAATGGCCATGCCGTCGCGCGAGGATTGGATCGTCGAGGCGGAGAAATGCGAGGAGGATGGG GCGCCGGTGACGTGCGAGGCCATCGTGCGCGAGACACTGAGCTGGGGGCTGGAGGAGGACAACGAGCGCAAGGAC ATATGGATGGAGGAGGCCAAGGCCAGCATCAACAGGGGCAGATACGAGACGGCGAGGGCCATCTACGCCCACGTG CTGCGTCATTTCTCAGGCAGCCGGACGGCCTGGATGGCGGCCGCGGACCTGGAGCGGACGCACGGCACGCGCGAG TCGCTGTGGGCGCTGCTGGACAAGGCGGTGGAGAAGTGCAGCAACAGCTCGGAGCTGTGGATGACGCTGGCCCGC GAGAAGTGGCAGGCCGGCGAGGTCGACGGCGCCCGGCTGGTGCTCAAGAGGGCATTCCAGCACAACCCCAACAAC GAGGATATCTGGCTGTCGGCCGTCAAGCTCGAGTCGGACAACGGCGATGAAGCCCAGGCGCGTCACCTGCTGGCC GTGGCCCGGGACCAGGCGCCGACGGACCGCGTCTGGCTCAAGGCCGTCGTCTTCGAGCGCGTCATGGGCCAGACG GAGGCGGCGCTGGATCTGGTGCTGCAGGCCCTCGATCGATTCCCCTCTGCGCCGAAGCTGTGGATGCTCAAGGGT CAGATATACGAGGACCTGGGCCGTGACGACGCGGCGCGCGAGGCCTACGCTGCCGGCGTCAAGGCCGTTCCCGGC TCCGTTCCCCTCTGGCTGCTCCACGCCCGGCTCGAGGAGCGGACGGGCAAGCTGGTCAAGGCGAGGTCCATCCTC GACCGCGCCCGGCTCGCGGCCCCGCTCAGCCCGGACATCTGGTGCGAGTCGGTCCGGCTCGAGCGGCGGGCGGGC AACATGGCCCAGGCGAGGAACCTGATGGCGCGCGCTCAGAAGGCCGTGTCCCGGAGCGGCCTCTTATGGGTCGAG CAGATCTGGCACCTCGAGCCGCGGACGCAGCGGAAGCAGCGAAGTCTCGAGGCCATCAAGAAGGCAGACAACGAC GCCATCCTCTTCGTCACCGTCGCCCGCATCTTCTGGGCTGACCGCCGGCTTGACAAGGCTCAGAACTGGTTCGAG AAGGCGCTCGTCCTCGATCCGGACTGCGGCGATAGCTGGGCTTGGTATCATCGTTTCCTGTGTCAGCATGGGACG CACGAGAAGCGCGCCGAGCTGGTGGCCAAGTGTGTGCAGAACGAGCCTCGCCACGGGGAGGTGTGGGCTTCGGTG GCCAAGAGACCGCGGAATGCTGAAAAGACGGTTGCCGAGAAGTTGGAGTTGGTGGCTGCCGAGCTCGAGGATTGA |