Protein ID | Ophcf2|02023 |
Gene name | |
Location | scaffold_02:2395960..2398735 |
Strand | + |
Gene length (bp) | 2775 |
Transcript length (bp) | 2775 |
Coding sequence length (bp) | 2775 |
Protein length (aa) | 925 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF06424 | PRP1_N | PRP1 splicing factor, N-terminal | 2.3E-49 | 12 | 170 |
PF13428 | TPR_14 | Tetratricopeptide repeat | 2.4E-05 | 593 | 632 |
PF14559 | TPR_19 | Tetratricopeptide repeat | 8.8E-06 | 604 | 662 |
PF13432 | TPR_16 | Tetratricopeptide repeat | 1.5E-07 | 672 | 726 |
PF13181 | TPR_8 | Tetratricopeptide repeat | 2.7E-03 | 694 | 720 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005515 | protein binding | Yes |
GO:0000398 | mRNA splicing, via spliceosome | Yes |
GO:0006725 | cellular aromatic compound metabolic process | No |
GO:0006397 | mRNA processing | No |
GO:0044237 | cellular metabolic process | No |
GO:0006396 | RNA processing | No |
GO:0009987 | cellular process | No |
GO:0008152 | metabolic process | No |
GO:0046483 | heterocycle metabolic process | No |
GO:0000375 | RNA splicing, via transesterification reactions | No |
GO:0006139 | nucleobase-containing compound metabolic process | No |
GO:0005488 | binding | No |
GO:0043170 | macromolecule metabolic process | No |
GO:1901360 | organic cyclic compound metabolic process | No |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | No |
GO:0071704 | organic substance metabolic process | No |
GO:0044238 | primary metabolic process | No |
GO:0006807 | nitrogen compound metabolic process | No |
GO:0016070 | RNA metabolic process | No |
GO:0003674 | molecular_function | No |
GO:0008380 | RNA splicing | No |
GO:0090304 | nucleic acid metabolic process | No |
GO:0016071 | mRNA metabolic process | No |
GO:0008150 | biological_process | No |
GO:0034641 | cellular nitrogen compound metabolic process | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Nucleus | Nuclear localization signal | 0.4425 | 0.6129 | 0.0181 | 0.1126 | 0.0663 | 0.0014 | 0.0421 | 0.1603 | 0.0634 | 0.008 |
Orthofinder run ID | 4 |
Orthogroup | 1384 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|02023 MTTRRDFLSQPAPENYVAGLGRGATGFTTRSDLGPARDGPSEDQIKEALAKRAAQLGIAPDGKDKKKGKDDAEAD DDDGRFQDPDNEVGLFAGGVYDKEDEEADRIWEWVDERMDRRKRQREERENAERSEYERNNPKIQQQFTDLKRAL STVTDDEWANLPEVGDLTGKNRRSKQALRQRFYAVPDSVLAAARDSTEMSTTVADEAGGDGTMTNFAEIGAARDK VLKSRLEQASQSSVTGGEGGSSTSIDPQGYITSLNKMQSGAQAQVGDVNRVRELLQSVVKTNPNNALGWIAAARL EELAGKTVAARKTIDKGCAQCPKSEDAWLENIRFNSESANAKVIARRALESNPHSVRLWVEAMKLETLTSNKKRV VRQALDHVPESEALWKEAVNLEEDAKDAKLLLAKATDLIPLSVDLWLALARLETPDKAQKVLNRARKAVPTSHEI WIAAARLQEQLGQGHKVNVMKRAVQVLAKEMAMPSREDWIVEAEKCEEDGAPVTCEAIVRETLSWGLEEDNERKD IWMEEAKASINRGRYETARAIYAHVLRHFSGSRTAWMAAADLERTHGTRESLWALLDKAVEKCSNSSELWMTLAR EKWQAGEVDGARLVLKRAFQHNPNNEDIWLSAVKLESDNGDEAQARHLLAVARDQAPTDRVWLKAVVFERVMGQT EAALDLVLQALDRFPSAPKLWMLKGQIYEDLGRDDAAREAYAAGVKAVPGSVPLWLLHARLEERTGKLVKARSIL DRARLAAPLSPDIWCESVRLERRAGNMAQARNLMARAQKAVSRSGLLWVEQIWHLEPRTQRKQRSLEAIKKADND AILFVTVARIFWADRRLDKAQNWFEKALVLDPDCGDSWAWYHRFLCQHGTHEKRAELVAKCVQNEPRHGEVWASV AKRPRNAEKTVAEKLELVAAELED* |
Coding | >Ophcf2|02023 ATGACGACTCGACGCGATTTCCTGAGCCAGCCGGCGCCGGAAAACTACGTGGCCGGTCTTGGTCGGGGCGCGACC GGCTTCACGACTCGATCAGATCTGGGTCCAGCCCGTGATGGCCCCAGCGAGGATCAGATCAAAGAGGCTCTCGCC AAACGAGCGGCTCAGCTGGGCATCGCGCCGGACGGAAAGGATAAGAAAAAGGGCAAGGATGACGCCGAGGCGGAT GACGATGACGGCCGGTTTCAAGACCCGGATAACGAGGTGGGCCTCTTCGCCGGCGGCGTCTACGACAAGGAAGAC GAGGAGGCGGATCGTATCTGGGAATGGGTCGATGAGCGAATGGACCGGCGGAAGCGGCAGCGGGAGGAGCGCGAA AACGCCGAGCGGAGCGAGTACGAGCGTAACAATCCCAAGATCCAGCAGCAGTTTACCGACCTCAAGCGAGCCCTT TCGACCGTCACCGATGATGAGTGGGCCAACCTCCCCGAAGTCGGCGACCTGACGGGCAAGAATCGGCGTAGCAAG CAGGCGCTTCGACAACGCTTCTACGCCGTGCCCGACAGCGTGCTGGCCGCCGCCCGCGACTCGACGGAGATGAGT ACGACGGTGGCCGACGAGGCCGGCGGTGACGGCACCATGACCAACTTCGCCGAGATCGGGGCCGCGCGCGACAAG GTGCTCAAGTCGAGGCTGGAACAGGCGTCGCAGTCGTCGGTGACGGGGGGCGAAGGCGGCAGCTCGACCAGCATC GATCCGCAGGGATACATCACCAGCCTCAACAAGATGCAGAGCGGGGCGCAGGCGCAAGTGGGCGACGTCAACCGC GTGCGGGAGCTGCTGCAGTCGGTTGTCAAGACGAACCCCAACAATGCCCTCGGCTGGATCGCGGCCGCTCGCCTC GAGGAGTTGGCGGGCAAGACGGTGGCAGCGCGCAAGACGATTGATAAGGGCTGCGCTCAGTGTCCCAAGAGCGAG GACGCCTGGCTCGAGAATATCCGGTTCAATAGCGAGTCGGCCAATGCAAAAGTCATCGCGCGGCGCGCCCTCGAA TCCAACCCGCATTCGGTCCGGCTATGGGTCGAGGCCATGAAGCTGGAGACGCTGACGAGCAACAAGAAGAGGGTG GTGCGTCAGGCCCTCGACCACGTGCCCGAGTCGGAGGCGCTGTGGAAGGAGGCTGTCAACCTGGAGGAGGACGCC AAGGACGCGAAGCTGCTGCTGGCCAAGGCGACGGATCTGATACCGCTGTCGGTCGACCTGTGGCTGGCGCTGGCC CGGCTGGAGACGCCTGACAAGGCGCAAAAGGTGCTGAACCGGGCGCGCAAGGCCGTGCCGACGTCGCACGAGATC TGGATCGCGGCGGCGCGGCTACAGGAGCAGCTGGGTCAGGGCCACAAGGTCAACGTGATGAAGAGGGCGGTGCAG GTGTTGGCCAAGGAAATGGCCATGCCGTCGCGCGAGGATTGGATCGTCGAGGCGGAGAAATGCGAGGAGGATGGG GCGCCGGTGACGTGCGAGGCCATCGTGCGCGAGACACTGAGCTGGGGGCTGGAGGAGGACAACGAGCGCAAGGAC ATATGGATGGAGGAGGCCAAGGCCAGCATCAACAGGGGCAGATACGAGACGGCGAGGGCCATCTACGCCCACGTG CTGCGTCATTTCTCAGGCAGCCGGACGGCCTGGATGGCGGCCGCGGACCTGGAGCGGACGCACGGCACGCGCGAG TCGCTGTGGGCGCTGCTGGACAAGGCGGTGGAGAAGTGCAGCAACAGCTCGGAGCTGTGGATGACGCTGGCCCGC GAGAAGTGGCAGGCCGGCGAGGTCGACGGCGCCCGGCTGGTGCTCAAGAGGGCATTCCAGCACAACCCCAACAAC GAGGATATCTGGCTGTCGGCCGTCAAGCTCGAGTCGGACAACGGCGATGAAGCCCAGGCGCGTCACCTGCTGGCC GTGGCCCGGGACCAGGCGCCGACGGACCGCGTCTGGCTCAAGGCCGTCGTCTTCGAGCGCGTCATGGGCCAGACG GAGGCGGCGCTGGATCTGGTGCTGCAGGCCCTCGATCGATTCCCCTCTGCGCCGAAGCTGTGGATGCTCAAGGGT CAGATATACGAGGACCTGGGCCGTGACGACGCGGCGCGCGAGGCCTACGCTGCCGGCGTCAAGGCCGTTCCCGGC TCCGTTCCCCTCTGGCTGCTCCACGCCCGGCTCGAGGAGCGGACGGGCAAGCTGGTCAAGGCGAGGTCCATCCTC GACCGCGCCCGGCTCGCGGCCCCGCTCAGCCCGGACATCTGGTGCGAGTCGGTCCGGCTCGAGCGGCGGGCGGGC AACATGGCCCAGGCGAGGAACCTGATGGCGCGCGCTCAGAAGGCCGTGTCCCGGAGCGGCCTCTTATGGGTCGAG CAGATCTGGCACCTCGAGCCGCGGACGCAGCGGAAGCAGCGAAGTCTCGAGGCCATCAAGAAGGCAGACAACGAC GCCATCCTCTTCGTCACCGTCGCCCGCATCTTCTGGGCTGACCGCCGGCTTGACAAGGCTCAGAACTGGTTCGAG AAGGCGCTCGTCCTCGATCCGGACTGCGGCGATAGCTGGGCTTGGTATCATCGTTTCCTGTGTCAGCATGGGACG CACGAGAAGCGCGCCGAGCTGGTGGCCAAGTGTGTGCAGAACGAGCCTCGCCACGGGGAGGTGTGGGCTTCGGTG GCCAAGAGACCGCGGAATGCTGAAAAGACGGTTGCCGAGAAGTTGGAGTTGGTGGCTGCCGAGCTCGAGGATTGA |
Transcript | >Ophcf2|02023 ATGACGACTCGACGCGATTTCCTGAGCCAGCCGGCGCCGGAAAACTACGTGGCCGGTCTTGGTCGGGGCGCGACC GGCTTCACGACTCGATCAGATCTGGGTCCAGCCCGTGATGGCCCCAGCGAGGATCAGATCAAAGAGGCTCTCGCC AAACGAGCGGCTCAGCTGGGCATCGCGCCGGACGGAAAGGATAAGAAAAAGGGCAAGGATGACGCCGAGGCGGAT GACGATGACGGCCGGTTTCAAGACCCGGATAACGAGGTGGGCCTCTTCGCCGGCGGCGTCTACGACAAGGAAGAC GAGGAGGCGGATCGTATCTGGGAATGGGTCGATGAGCGAATGGACCGGCGGAAGCGGCAGCGGGAGGAGCGCGAA AACGCCGAGCGGAGCGAGTACGAGCGTAACAATCCCAAGATCCAGCAGCAGTTTACCGACCTCAAGCGAGCCCTT TCGACCGTCACCGATGATGAGTGGGCCAACCTCCCCGAAGTCGGCGACCTGACGGGCAAGAATCGGCGTAGCAAG CAGGCGCTTCGACAACGCTTCTACGCCGTGCCCGACAGCGTGCTGGCCGCCGCCCGCGACTCGACGGAGATGAGT ACGACGGTGGCCGACGAGGCCGGCGGTGACGGCACCATGACCAACTTCGCCGAGATCGGGGCCGCGCGCGACAAG GTGCTCAAGTCGAGGCTGGAACAGGCGTCGCAGTCGTCGGTGACGGGGGGCGAAGGCGGCAGCTCGACCAGCATC GATCCGCAGGGATACATCACCAGCCTCAACAAGATGCAGAGCGGGGCGCAGGCGCAAGTGGGCGACGTCAACCGC GTGCGGGAGCTGCTGCAGTCGGTTGTCAAGACGAACCCCAACAATGCCCTCGGCTGGATCGCGGCCGCTCGCCTC GAGGAGTTGGCGGGCAAGACGGTGGCAGCGCGCAAGACGATTGATAAGGGCTGCGCTCAGTGTCCCAAGAGCGAG GACGCCTGGCTCGAGAATATCCGGTTCAATAGCGAGTCGGCCAATGCAAAAGTCATCGCGCGGCGCGCCCTCGAA TCCAACCCGCATTCGGTCCGGCTATGGGTCGAGGCCATGAAGCTGGAGACGCTGACGAGCAACAAGAAGAGGGTG GTGCGTCAGGCCCTCGACCACGTGCCCGAGTCGGAGGCGCTGTGGAAGGAGGCTGTCAACCTGGAGGAGGACGCC AAGGACGCGAAGCTGCTGCTGGCCAAGGCGACGGATCTGATACCGCTGTCGGTCGACCTGTGGCTGGCGCTGGCC CGGCTGGAGACGCCTGACAAGGCGCAAAAGGTGCTGAACCGGGCGCGCAAGGCCGTGCCGACGTCGCACGAGATC TGGATCGCGGCGGCGCGGCTACAGGAGCAGCTGGGTCAGGGCCACAAGGTCAACGTGATGAAGAGGGCGGTGCAG GTGTTGGCCAAGGAAATGGCCATGCCGTCGCGCGAGGATTGGATCGTCGAGGCGGAGAAATGCGAGGAGGATGGG GCGCCGGTGACGTGCGAGGCCATCGTGCGCGAGACACTGAGCTGGGGGCTGGAGGAGGACAACGAGCGCAAGGAC ATATGGATGGAGGAGGCCAAGGCCAGCATCAACAGGGGCAGATACGAGACGGCGAGGGCCATCTACGCCCACGTG CTGCGTCATTTCTCAGGCAGCCGGACGGCCTGGATGGCGGCCGCGGACCTGGAGCGGACGCACGGCACGCGCGAG TCGCTGTGGGCGCTGCTGGACAAGGCGGTGGAGAAGTGCAGCAACAGCTCGGAGCTGTGGATGACGCTGGCCCGC GAGAAGTGGCAGGCCGGCGAGGTCGACGGCGCCCGGCTGGTGCTCAAGAGGGCATTCCAGCACAACCCCAACAAC GAGGATATCTGGCTGTCGGCCGTCAAGCTCGAGTCGGACAACGGCGATGAAGCCCAGGCGCGTCACCTGCTGGCC GTGGCCCGGGACCAGGCGCCGACGGACCGCGTCTGGCTCAAGGCCGTCGTCTTCGAGCGCGTCATGGGCCAGACG GAGGCGGCGCTGGATCTGGTGCTGCAGGCCCTCGATCGATTCCCCTCTGCGCCGAAGCTGTGGATGCTCAAGGGT CAGATATACGAGGACCTGGGCCGTGACGACGCGGCGCGCGAGGCCTACGCTGCCGGCGTCAAGGCCGTTCCCGGC TCCGTTCCCCTCTGGCTGCTCCACGCCCGGCTCGAGGAGCGGACGGGCAAGCTGGTCAAGGCGAGGTCCATCCTC GACCGCGCCCGGCTCGCGGCCCCGCTCAGCCCGGACATCTGGTGCGAGTCGGTCCGGCTCGAGCGGCGGGCGGGC AACATGGCCCAGGCGAGGAACCTGATGGCGCGCGCTCAGAAGGCCGTGTCCCGGAGCGGCCTCTTATGGGTCGAG CAGATCTGGCACCTCGAGCCGCGGACGCAGCGGAAGCAGCGAAGTCTCGAGGCCATCAAGAAGGCAGACAACGAC GCCATCCTCTTCGTCACCGTCGCCCGCATCTTCTGGGCTGACCGCCGGCTTGACAAGGCTCAGAACTGGTTCGAG AAGGCGCTCGTCCTCGATCCGGACTGCGGCGATAGCTGGGCTTGGTATCATCGTTTCCTGTGTCAGCATGGGACG CACGAGAAGCGCGCCGAGCTGGTGGCCAAGTGTGTGCAGAACGAGCCTCGCCACGGGGAGGTGTGGGCTTCGGTG GCCAAGAGACCGCGGAATGCTGAAAAGACGGTTGCCGAGAAGTTGGAGTTGGTGGCTGCCGAGCTCGAGGATTGA |
Gene | >Ophcf2|02023 ATGACGACTCGACGCGATTTCCTGAGCCAGCCGGCGCCGGAAAACTACGTGGCCGGTCTTGGTCGGGGCGCGACC GGCTTCACGACTCGATCAGATCTGGGTCCAGCCCGTGATGGCCCCAGCGAGGATCAGATCAAAGAGGCTCTCGCC AAACGAGCGGCTCAGCTGGGCATCGCGCCGGACGGAAAGGATAAGAAAAAGGGCAAGGATGACGCCGAGGCGGAT GACGATGACGGCCGGTTTCAAGACCCGGATAACGAGGTGGGCCTCTTCGCCGGCGGCGTCTACGACAAGGAAGAC GAGGAGGCGGATCGTATCTGGGAATGGGTCGATGAGCGAATGGACCGGCGGAAGCGGCAGCGGGAGGAGCGCGAA AACGCCGAGCGGAGCGAGTACGAGCGTAACAATCCCAAGATCCAGCAGCAGTTTACCGACCTCAAGCGAGCCCTT TCGACCGTCACCGATGATGAGTGGGCCAACCTCCCCGAAGTCGGCGACCTGACGGGCAAGAATCGGCGTAGCAAG CAGGCGCTTCGACAACGCTTCTACGCCGTGCCCGACAGCGTGCTGGCCGCCGCCCGCGACTCGACGGAGATGAGT ACGACGGTGGCCGACGAGGCCGGCGGTGACGGCACCATGACCAACTTCGCCGAGATCGGGGCCGCGCGCGACAAG GTGCTCAAGTCGAGGCTGGAACAGGCGTCGCAGTCGTCGGTGACGGGGGGCGAAGGCGGCAGCTCGACCAGCATC GATCCGCAGGGATACATCACCAGCCTCAACAAGATGCAGAGCGGGGCGCAGGCGCAAGTGGGCGACGTCAACCGC GTGCGGGAGCTGCTGCAGTCGGTTGTCAAGACGAACCCCAACAATGCCCTCGGCTGGATCGCGGCCGCTCGCCTC GAGGAGTTGGCGGGCAAGACGGTGGCAGCGCGCAAGACGATTGATAAGGGCTGCGCTCAGTGTCCCAAGAGCGAG GACGCCTGGCTCGAGAATATCCGGTTCAATAGCGAGTCGGCCAATGCAAAAGTCATCGCGCGGCGCGCCCTCGAA TCCAACCCGCATTCGGTCCGGCTATGGGTCGAGGCCATGAAGCTGGAGACGCTGACGAGCAACAAGAAGAGGGTG GTGCGTCAGGCCCTCGACCACGTGCCCGAGTCGGAGGCGCTGTGGAAGGAGGCTGTCAACCTGGAGGAGGACGCC AAGGACGCGAAGCTGCTGCTGGCCAAGGCGACGGATCTGATACCGCTGTCGGTCGACCTGTGGCTGGCGCTGGCC CGGCTGGAGACGCCTGACAAGGCGCAAAAGGTGCTGAACCGGGCGCGCAAGGCCGTGCCGACGTCGCACGAGATC TGGATCGCGGCGGCGCGGCTACAGGAGCAGCTGGGTCAGGGCCACAAGGTCAACGTGATGAAGAGGGCGGTGCAG GTGTTGGCCAAGGAAATGGCCATGCCGTCGCGCGAGGATTGGATCGTCGAGGCGGAGAAATGCGAGGAGGATGGG GCGCCGGTGACGTGCGAGGCCATCGTGCGCGAGACACTGAGCTGGGGGCTGGAGGAGGACAACGAGCGCAAGGAC ATATGGATGGAGGAGGCCAAGGCCAGCATCAACAGGGGCAGATACGAGACGGCGAGGGCCATCTACGCCCACGTG CTGCGTCATTTCTCAGGCAGCCGGACGGCCTGGATGGCGGCCGCGGACCTGGAGCGGACGCACGGCACGCGCGAG TCGCTGTGGGCGCTGCTGGACAAGGCGGTGGAGAAGTGCAGCAACAGCTCGGAGCTGTGGATGACGCTGGCCCGC GAGAAGTGGCAGGCCGGCGAGGTCGACGGCGCCCGGCTGGTGCTCAAGAGGGCATTCCAGCACAACCCCAACAAC GAGGATATCTGGCTGTCGGCCGTCAAGCTCGAGTCGGACAACGGCGATGAAGCCCAGGCGCGTCACCTGCTGGCC GTGGCCCGGGACCAGGCGCCGACGGACCGCGTCTGGCTCAAGGCCGTCGTCTTCGAGCGCGTCATGGGCCAGACG GAGGCGGCGCTGGATCTGGTGCTGCAGGCCCTCGATCGATTCCCCTCTGCGCCGAAGCTGTGGATGCTCAAGGGT CAGATATACGAGGACCTGGGCCGTGACGACGCGGCGCGCGAGGCCTACGCTGCCGGCGTCAAGGCCGTTCCCGGC TCCGTTCCCCTCTGGCTGCTCCACGCCCGGCTCGAGGAGCGGACGGGCAAGCTGGTCAAGGCGAGGTCCATCCTC GACCGCGCCCGGCTCGCGGCCCCGCTCAGCCCGGACATCTGGTGCGAGTCGGTCCGGCTCGAGCGGCGGGCGGGC AACATGGCCCAGGCGAGGAACCTGATGGCGCGCGCTCAGAAGGCCGTGTCCCGGAGCGGCCTCTTATGGGTCGAG CAGATCTGGCACCTCGAGCCGCGGACGCAGCGGAAGCAGCGAAGTCTCGAGGCCATCAAGAAGGCAGACAACGAC GCCATCCTCTTCGTCACCGTCGCCCGCATCTTCTGGGCTGACCGCCGGCTTGACAAGGCTCAGAACTGGTTCGAG AAGGCGCTCGTCCTCGATCCGGACTGCGGCGATAGCTGGGCTTGGTATCATCGTTTCCTGTGTCAGCATGGGACG CACGAGAAGCGCGCCGAGCTGGTGGCCAAGTGTGTGCAGAACGAGCCTCGCCACGGGGAGGTGTGGGCTTCGGTG GCCAAGAGACCGCGGAATGCTGAAAAGACGGTTGCCGAGAAGTTGGAGTTGGTGGCTGCCGAGCTCGAGGATTGA |