© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01989 |
| Gene name | |
| Location | scaffold_02:2303336..2305413 |
| Strand | + |
| Gene length (bp) | 2077 |
| Transcript length (bp) | 1761 |
| Coding sequence length (bp) | 1761 |
| Protein length (aa) | 587 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00324 | AA_permease | Amino acid permease | 3.2E-112 | 68 | 536 |
| PF13520 | AA_permease_2 | Amino acid permease | 3.4E-41 | 70 | 493 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Transmembrane domain | 0.1634 | 0.0942 | 0.0317 | 0.6069 | 0.1774 | 0.0327 | 0.3622 | 0.4793 | 0.4774 | 0.0173 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 69 | 91 | 22 |
| 2 | 101 | 123 | 22 |
| 3 | 136 | 158 | 22 |
| 4 | 180 | 202 | 22 |
| 5 | 209 | 231 | 22 |
| 6 | 261 | 280 | 19 |
| 7 | 301 | 323 | 22 |
| 8 | 350 | 372 | 22 |
| 9 | 403 | 422 | 19 |
| 10 | 437 | 459 | 22 |
| 11 | 472 | 494 | 22 |
| 12 | 514 | 533 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 187 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01989 MLRRSRTKERRANGIWRLKASGNPSSSLPRGGLEKGGLATAYAQAEHGHVGIETSPETSLHRGLRARHITMLAIG GALGTGLIVGTGKGLAQAGPGSLFIAFTFVGTIVFMVLAGIGEMAAWLPLSSGFTGYASRYCHPSLGFALGWSYL MKYLIVTPNQLTAASLVFQFWVPRDRLNPGVLVAIFLVAIFCINYFGGITFFGEFEFWLSSFKVIVVLGIILFSL ILACGGGPSGDRPGFRYWSDPGAFAPLYATGPLGRWVGFWSVMTLATFAYLGVELCAVTAAEAQNPRRSVPKAIK LTFYRILVFYCLSVLLVGMLVPYNSPRLAFANKSGSSSASASPFVVAAEVAGVQVLPHIINACICIFVFSAANSD LYIGSRTLYGLASDGAAPAIFKRVDSRGVPYPALLFCTLFACLAFLVVSDDSREIFNYFVNVTTVFGLLVWCSLL VAYICFLRARRAQKLPDSGMPYVAPQGLIGSYGALFFCVLITLTKNFTVFIRHDGSNFAYKDFITGYIGIPVYLA LLFGHMIITKSRGIRPDEVDFFTGKEYVDAEEKAFLEKEVAKRAASKGWARFYNRYVAWLF* |
| Coding | >Ophcf2|01989 ATGCTTCGTCGGTCGAGAACCAAGGAGCGGCGGGCCAATGGGATTTGGCGACTTAAAGCCAGTGGAAACCCCTCA TCCTCACTCCCCCGCGGCGGCCTCGAAAAGGGCGGCTTGGCCACGGCCTATGCTCAGGCTGAGCATGGCCACGTC GGTATCGAGACGTCGCCCGAGACGTCGCTCCATCGGGGTCTTCGCGCGAGGCACATCACCATGTTGGCTATCGGC GGCGCTCTGGGCACGGGCTTGATCGTCGGGACGGGGAAAGGGCTTGCTCAGGCCGGGCCCGGGTCGCTGTTCATC GCCTTTACCTTTGTCGGCACCATCGTCTTTATGGTATTGGCTGGGATTGGCGAGATGGCGGCTTGGTTGCCTCTG AGCTCCGGGTTTACGGGCTATGCTTCGCGGTATTGTCATCCTTCTCTGGGGTTTGCGCTGGGATGGTCCTATCTC ATGAAATATCTCATCGTCACTCCCAACCAGCTGACGGCCGCCTCTCTCGTCTTCCAGTTCTGGGTCCCTCGCGAT AGGCTCAACCCGGGAGTGCTGGTGGCCATCTTCCTCGTGGCCATCTTCTGCATCAACTACTTTGGCGGCATCACC TTCTTCGGCGAGTTCGAGTTCTGGCTTTCGTCCTTCAAGGTCATCGTCGTCCTCGGCATCATCCTCTTCTCCCTC ATACTCGCTTGCGGAGGCGGTCCTTCGGGCGACCGGCCCGGCTTCCGCTACTGGTCCGATCCGGGCGCCTTTGCT CCGCTGTACGCTACCGGTCCTCTCGGCCGCTGGGTCGGCTTCTGGTCGGTCATGACGCTCGCCACCTTTGCCTAT CTGGGCGTCGAGCTGTGCGCGGTGACGGCGGCCGAGGCGCAGAACCCGAGACGGTCGGTCCCAAAGGCCATCAAG CTCACCTTTTACCGCATCCTCGTCTTTTACTGCCTCAGCGTCCTGCTCGTCGGTATGCTGGTGCCCTACAACTCT CCGCGGCTCGCCTTTGCCAACAAGTCGGGATCGTCGTCGGCTTCGGCCTCGCCTTTCGTCGTGGCCGCTGAGGTG GCGGGCGTACAGGTGCTTCCTCACATCATCAACGCCTGCATCTGCATCTTCGTCTTCTCGGCTGCCAACTCTGAC CTCTACATCGGGAGTCGTACGCTCTACGGCCTGGCCAGTGACGGCGCCGCTCCGGCCATTTTCAAAAGGGTCGAT TCCAGGGGCGTTCCCTATCCCGCTCTCCTCTTCTGCACCCTCTTCGCCTGTCTGGCCTTTCTCGTCGTCTCGGAT GACAGCCGCGAGATCTTCAACTACTTCGTCAACGTCACCACCGTCTTCGGCCTGCTGGTCTGGTGCTCGCTGCTC GTCGCTTACATCTGCTTCCTCAGGGCACGTCGGGCGCAGAAGCTACCGGACAGCGGGATGCCCTACGTCGCGCCG CAGGGTCTGATTGGCTCCTACGGCGCTCTGTTCTTCTGCGTGCTCATCACGCTGACCAAGAACTTTACCGTCTTC ATCCGTCACGACGGTTCCAACTTTGCCTACAAGGATTTCATCACCGGTTACATCGGGATCCCCGTCTACCTGGCC CTGCTGTTCGGTCACATGATCATCACCAAGAGTCGTGGCATCCGGCCGGACGAGGTTGACTTTTTCACTGGCAAG GAATATGTCGATGCTGAGGAGAAGGCGTTTTTGGAGAAGGAGGTGGCTAAGAGGGCGGCGTCCAAGGGGTGGGCT AGGTTTTATAACCGCTATGTTGCTTGGTTGTTTTAG |
| Transcript | >Ophcf2|01989 ATGCTTCGTCGGTCGAGAACCAAGGAGCGGCGGGCCAATGGGATTTGGCGACTTAAAGCCAGTGGAAACCCCTCA TCCTCACTCCCCCGCGGCGGCCTCGAAAAGGGCGGCTTGGCCACGGCCTATGCTCAGGCTGAGCATGGCCACGTC GGTATCGAGACGTCGCCCGAGACGTCGCTCCATCGGGGTCTTCGCGCGAGGCACATCACCATGTTGGCTATCGGC GGCGCTCTGGGCACGGGCTTGATCGTCGGGACGGGGAAAGGGCTTGCTCAGGCCGGGCCCGGGTCGCTGTTCATC GCCTTTACCTTTGTCGGCACCATCGTCTTTATGGTATTGGCTGGGATTGGCGAGATGGCGGCTTGGTTGCCTCTG AGCTCCGGGTTTACGGGCTATGCTTCGCGGTATTGTCATCCTTCTCTGGGGTTTGCGCTGGGATGGTCCTATCTC ATGAAATATCTCATCGTCACTCCCAACCAGCTGACGGCCGCCTCTCTCGTCTTCCAGTTCTGGGTCCCTCGCGAT AGGCTCAACCCGGGAGTGCTGGTGGCCATCTTCCTCGTGGCCATCTTCTGCATCAACTACTTTGGCGGCATCACC TTCTTCGGCGAGTTCGAGTTCTGGCTTTCGTCCTTCAAGGTCATCGTCGTCCTCGGCATCATCCTCTTCTCCCTC ATACTCGCTTGCGGAGGCGGTCCTTCGGGCGACCGGCCCGGCTTCCGCTACTGGTCCGATCCGGGCGCCTTTGCT CCGCTGTACGCTACCGGTCCTCTCGGCCGCTGGGTCGGCTTCTGGTCGGTCATGACGCTCGCCACCTTTGCCTAT CTGGGCGTCGAGCTGTGCGCGGTGACGGCGGCCGAGGCGCAGAACCCGAGACGGTCGGTCCCAAAGGCCATCAAG CTCACCTTTTACCGCATCCTCGTCTTTTACTGCCTCAGCGTCCTGCTCGTCGGTATGCTGGTGCCCTACAACTCT CCGCGGCTCGCCTTTGCCAACAAGTCGGGATCGTCGTCGGCTTCGGCCTCGCCTTTCGTCGTGGCCGCTGAGGTG GCGGGCGTACAGGTGCTTCCTCACATCATCAACGCCTGCATCTGCATCTTCGTCTTCTCGGCTGCCAACTCTGAC CTCTACATCGGGAGTCGTACGCTCTACGGCCTGGCCAGTGACGGCGCCGCTCCGGCCATTTTCAAAAGGGTCGAT TCCAGGGGCGTTCCCTATCCCGCTCTCCTCTTCTGCACCCTCTTCGCCTGTCTGGCCTTTCTCGTCGTCTCGGAT GACAGCCGCGAGATCTTCAACTACTTCGTCAACGTCACCACCGTCTTCGGCCTGCTGGTCTGGTGCTCGCTGCTC GTCGCTTACATCTGCTTCCTCAGGGCACGTCGGGCGCAGAAGCTACCGGACAGCGGGATGCCCTACGTCGCGCCG CAGGGTCTGATTGGCTCCTACGGCGCTCTGTTCTTCTGCGTGCTCATCACGCTGACCAAGAACTTTACCGTCTTC ATCCGTCACGACGGTTCCAACTTTGCCTACAAGGATTTCATCACCGGTTACATCGGGATCCCCGTCTACCTGGCC CTGCTGTTCGGTCACATGATCATCACCAAGAGTCGTGGCATCCGGCCGGACGAGGTTGACTTTTTCACTGGCAAG GAATATGTCGATGCTGAGGAGAAGGCGTTTTTGGAGAAGGAGGTGGCTAAGAGGGCGGCGTCCAAGGGGTGGGCT AGGTTTTATAACCGCTATGTTGCTTGGTTGTTTTAG |
| Gene | >Ophcf2|01989 ATGCTTCGTCGGTCGAGAACCAAGGAGCGGCGGGCCAATGGGGTGGCTGCGGGATCGACTGCCCCAACGGGAGTC TTCCGTCTTACCTTGGTAGTTGGTACTGACAAGGGGAGGACAAGATTTGGCGGTGCGTCCATGGTCCATGGGGAG GGCACGCTTAGTTTTCTGTCCCTGTTGGCTCTACCTACGAATACACAGCGGGTATGCTGACAAGCGCAGACTTAA AGCCAGTGGAAACCCCTCATCCTCACTCCCCCGGTCAGACTCCATCCGTCGTCTCCTTCTATCCATCCTCACAAC ATGGCCGACTCGCACAGCGGCGGCCTCGAAAAGGGCGGCTTGGCCACGGCCTATGCTCAGGCTGAGCATGGCCAC GTCGGTATCGAGACGTCGCCCGAGACGTCGCTCCATCGGGGTCTTCGCGCGAGGCACATCACCATGTTGGCTATC GGCGGCGCTCTGGGCACGGGCTTGATCGTCGGGACGGGGAAAGGGCTTGCTCAGGCCGGGCCCGGGTCGCTGTTC ATCGCCTTTACCTTTGTCGGCACCATCGTCTTTATGGTATTGGCTGGGATTGGCGAGATGGCGGCTTGGTTGCCT CTGAGCTCCGGGTTTACGGGCTATGCTTCGCGGTATTGTCATCCTTCTCTGGGGTTTGCGCTGGGATGGTCGTGA GTCTTTTCTTTTCTTTTCTTTTTTTTTTTTTTCGTCGCCCATGTTCCGCTCCGTCTAGCGGCCTCTGATTCTGAC AGCCATCAGCTATCTCATGAAATATCTCATCGTCACTCCCAACCAGCTGACGGCCGCCTCTCTCGTCTTCCAGTT CTGGGTCCCTCGCGATAGGCTCAACCCGGGAGTGCTGGTGGCCATCTTCCTCGTGGCCATCTTCTGCATCAACTA CTTTGGCGGCATCACCTTCTTCGGCGAGTTCGAGTTCTGGCTTTCGTCCTTCAAGGTCATCGTCGTCCTCGGCAT CATCCTCTTCTCCCTCATACTCGCTTGCGGAGGCGGTCCTTCGGGCGACCGGCCCGGCTTCCGCTACTGGTCCGA TCCGGGCGCCTTTGCTCCGCTGTACGCTACCGGTCCTCTCGGCCGCTGGGTCGGCTTCTGGTCGGTCATGACGCT CGCCACCTTTGCCTATCTGGGCGTCGAGCTGTGCGCGGTGACGGCGGCCGAGGCGCAGAACCCGAGACGGTCGGT CCCAAAGGCCATCAAGCTCACCTTTTACCGCATCCTCGTCTTTTACTGCCTCAGCGTCCTGCTCGTCGGTATGCT GGTGCCCTACAACTCTCCGCGGCTCGCCTTTGCCAACAAGTCGGGATCGTCGTCGGCTTCGGCCTCGCCTTTCGT CGTGGCCGCTGAGGTGGCGGGCGTACAGGTGCTTCCTCACATCATCAACGCCTGCATCTGCATCTTCGTCTTCTC GGCTGCCAACTCTGACCTCTACATCGGGAGTCGTACGCTCTACGGCCTGGCCAGTGACGGCGCCGCTCCGGCCAT TTTCAAAAGGGTCGATTCCAGGGGCGTTCCCTATCCCGCTCTCCTCTTCTGCACCCTCTTCGCCTGTCTGGCCTT TCTCGTCGTCTCGGATGACAGCCGCGAGATCTTCAACTACTTCGTCAACGTCACCACCGTCTTCGGCCTGCTGGT CTGGTGCTCGCTGCTCGTCGCTTACATCTGCTTCCTCAGGGCACGTCGGGCGCAGAAGCTACCGGACAGCGGGAT GCCCTACGTCGCGCCGCAGGGTCTGATTGGCTCCTACGGCGCTCTGTTCTTCTGCGTGCTCATCACGCTGACCAA GAACTTTACCGTCTTCATCCGTCACGACGGTTCCAACTTTGCCTACAAGGATTTCATCACCGGTTACATCGGGAT CCCCGTCTACCTGGCCCTGCTGTTCGGTCACATGATCATCACCAAGAGTCGTGGCATCCGGCCGGACGAGGTTGA CTTTTTCACTGGCAAGGAATATGTCGATGCTGAGGAGAAGGCGTTTTTGGAGAAGGAGGTGGCTAAGAGGGCGGC GTCCAAGGGGTGGGCTAGGTTTTATAACCGCTATGTTGCTTGGTTGTTTTAG |