Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|01930
Gene name
Location	scaffold_02:2118647..2119226
Strand	-
Gene length (bp)	579
Transcript length (bp)	579
Coding sequence length (bp)	579
Protein length (aa)	193

PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 18	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	101	123	22
2	128	150	22
3	152	174	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	9.01	2.01	16.01
Alive	In ants, during behavior modification	36.86	14.79	58.93
Dead	In ants, recently dead	25.22	9.57	40.87

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.000238	yes
Alive	Dead	0.105646	no
Dead	Fungus	0.001768	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|01930 MKISASITALLAATVLAAPTPKQANQVSAAAVAEADQNPARIIIDPGLDSSKSGEVTSIDSVVVPGSSSAAGAGG QVSAATLGLGRLRRQQRRTRRFIRRFGFFPGAFGGFGLGAFGGFGGLGFPGLGGGFGFGGVGGFGGVGGFGGLGV PGAGLGVGGIGLGGGLGGFPVGSVPSQLGILGPQFLGPAILP*
Coding	>Ophcf2\|01930 ATGAAAATCAGCGCCTCGATAACAGCTCTCCTGGCCGCGACCGTCCTCGCAGCGCCAACCCCAAAACAAGCCAAC CAAGTCAGCGCCGCCGCCGTCGCAGAAGCAGACCAAAACCCAGCCCGCATCATCATAGACCCGGGCCTCGACAGC AGCAAATCCGGAGAAGTCACGTCCATCGACTCCGTCGTCGTGCCGGGCAGCAGCAGCGCGGCCGGTGCCGGCGGT CAAGTCAGCGCCGCGACTCTCGGGCTGGGGAGACTTCGGAGGCAGCAGAGGAGGACGCGGCGCTTCATCAGGAGG TTCGGCTTCTTCCCCGGGGCCTTTGGCGGGTTTGGTCTCGGGGCTTTTGGAGGCTTTGGTGGTCTTGGCTTTCCC GGCTTGGGCGGTGGCTTTGGCTTCGGCGGCGTGGGAGGCTTCGGCGGTGTGGGGGGATTCGGCGGCTTGGGAGTT CCCGGGGCGGGACTCGGTGTCGGAGGGATCGGTCTCGGGGGCGGTCTCGGAGGGTTTCCCGTCGGCTCGGTTCCC AGCCAGCTGGGCATTCTCGGTCCGCAGTTTCTTGGGCCTGCTATCCTTCCCTAG
Transcript	>Ophcf2\|01930 ATGAAAATCAGCGCCTCGATAACAGCTCTCCTGGCCGCGACCGTCCTCGCAGCGCCAACCCCAAAACAAGCCAAC CAAGTCAGCGCCGCCGCCGTCGCAGAAGCAGACCAAAACCCAGCCCGCATCATCATAGACCCGGGCCTCGACAGC AGCAAATCCGGAGAAGTCACGTCCATCGACTCCGTCGTCGTGCCGGGCAGCAGCAGCGCGGCCGGTGCCGGCGGT CAAGTCAGCGCCGCGACTCTCGGGCTGGGGAGACTTCGGAGGCAGCAGAGGAGGACGCGGCGCTTCATCAGGAGG TTCGGCTTCTTCCCCGGGGCCTTTGGCGGGTTTGGTCTCGGGGCTTTTGGAGGCTTTGGTGGTCTTGGCTTTCCC GGCTTGGGCGGTGGCTTTGGCTTCGGCGGCGTGGGAGGCTTCGGCGGTGTGGGGGGATTCGGCGGCTTGGGAGTT CCCGGGGCGGGACTCGGTGTCGGAGGGATCGGTCTCGGGGGCGGTCTCGGAGGGTTTCCCGTCGGCTCGGTTCCC AGCCAGCTGGGCATTCTCGGTCCGCAGTTTCTTGGGCCTGCTATCCTTCCCTAG
Gene	>Ophcf2\|01930 ATGAAAATCAGCGCCTCGATAACAGCTCTCCTGGCCGCGACCGTCCTCGCAGCGCCAACCCCAAAACAAGCCAAC CAAGTCAGCGCCGCCGCCGTCGCAGAAGCAGACCAAAACCCAGCCCGCATCATCATAGACCCGGGCCTCGACAGC AGCAAATCCGGAGAAGTCACGTCCATCGACTCCGTCGTCGTGCCGGGCAGCAGCAGCGCGGCCGGTGCCGGCGGT CAAGTCAGCGCCGCGACTCTCGGGCTGGGGAGACTTCGGAGGCAGCAGAGGAGGACGCGGCGCTTCATCAGGAGG TTCGGCTTCTTCCCCGGGGCCTTTGGCGGGTTTGGTCTCGGGGCTTTTGGAGGCTTTGGTGGTCTTGGCTTTCCC GGCTTGGGCGGTGGCTTTGGCTTCGGCGGCGTGGGAGGCTTCGGCGGTGTGGGGGGATTCGGCGGCTTGGGAGTT CCCGGGGCGGGACTCGGTGTCGGAGGGATCGGTCTCGGGGGCGGTCTCGGAGGGTTTCCCGTCGGCTCGGTTCCC AGCCAGCTGGGCATTCTCGGTCCGCAGTTTCTTGGGCCTGCTATCCTTCCCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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