Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|01923
Gene name
Locationscaffold_02:2104586..2105069
Strand+
Gene length (bp)483
Transcript length (bp)483
Coding sequence length (bp)483
Protein length (aa) 161

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05620 TMEM208_SND2 SRP-independent targeting protein 2/TMEM208 2.6E-49 1 155

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 57 0.5

Transmembrane Domains

Domain # Start End Length
1 20 38 18
2 43 65 22
3 86 108 22
4 112 134 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|01923
MAQKAKKELAKSNSASLNRLHLISLVANGIFLFAHLAGRRRSLLAYALLSLPAFACQYILEISGRPKYDATSGVL
KSPGQDLAAQGLTEYMFDVVWVTWVCCAAVVLAGNWAWLLWAVIPAYGLYLGAGLFGAGRQQLAGMQTAQGGGAP
PANRRARRAA*
Coding >Ophcf2|01923
ATGGCACAGAAAGCTAAAAAGGAACTCGCCAAGAGCAATTCCGCCTCCCTTAACCGTCTGCATCTGATCTCGCTA
GTCGCCAACGGCATTTTCCTCTTCGCTCACCTCGCTGGCCGCCGCCGCTCTCTGCTCGCCTACGCCCTTCTGTCG
CTGCCGGCCTTTGCGTGCCAATACATCCTCGAGATCTCGGGCCGTCCCAAGTACGATGCCACCTCGGGCGTCCTC
AAGAGCCCTGGTCAGGACCTGGCCGCTCAGGGCTTGACCGAGTACATGTTTGACGTCGTCTGGGTCACTTGGGTT
TGCTGCGCTGCTGTCGTCCTGGCCGGTAACTGGGCCTGGCTCTTGTGGGCTGTCATTCCTGCCTATGGTCTCTAT
CTCGGAGCTGGTCTCTTCGGAGCCGGCCGTCAGCAGCTCGCCGGCATGCAGACCGCTCAGGGAGGGGGAGCTCCT
CCGGCCAACCGCCGAGCCAGGCGAGCTGCTTGA
Transcript >Ophcf2|01923
ATGGCACAGAAAGCTAAAAAGGAACTCGCCAAGAGCAATTCCGCCTCCCTTAACCGTCTGCATCTGATCTCGCTA
GTCGCCAACGGCATTTTCCTCTTCGCTCACCTCGCTGGCCGCCGCCGCTCTCTGCTCGCCTACGCCCTTCTGTCG
CTGCCGGCCTTTGCGTGCCAATACATCCTCGAGATCTCGGGCCGTCCCAAGTACGATGCCACCTCGGGCGTCCTC
AAGAGCCCTGGTCAGGACCTGGCCGCTCAGGGCTTGACCGAGTACATGTTTGACGTCGTCTGGGTCACTTGGGTT
TGCTGCGCTGCTGTCGTCCTGGCCGGTAACTGGGCCTGGCTCTTGTGGGCTGTCATTCCTGCCTATGGTCTCTAT
CTCGGAGCTGGTCTCTTCGGAGCCGGCCGTCAGCAGCTCGCCGGCATGCAGACCGCTCAGGGAGGGGGAGCTCCT
CCGGCCAACCGCCGAGCCAGGCGAGCTGCTTGA
Gene >Ophcf2|01923
ATGGCACAGAAAGCTAAAAAGGAACTCGCCAAGAGCAATTCCGCCTCCCTTAACCGTCTGCATCTGATCTCGCTA
GTCGCCAACGGCATTTTCCTCTTCGCTCACCTCGCTGGCCGCCGCCGCTCTCTGCTCGCCTACGCCCTTCTGTCG
CTGCCGGCCTTTGCGTGCCAATACATCCTCGAGATCTCGGGCCGTCCCAAGTACGATGCCACCTCGGGCGTCCTC
AAGAGCCCTGGTCAGGACCTGGCCGCTCAGGGCTTGACCGAGTACATGTTTGACGTCGTCTGGGTCACTTGGGTT
TGCTGCGCTGCTGTCGTCCTGGCCGGTAACTGGGCCTGGCTCTTGTGGGCTGTCATTCCTGCCTATGGTCTCTAT
CTCGGAGCTGGTCTCTTCGGAGCCGGCCGTCAGCAGCTCGCCGGCATGCAGACCGCTCAGGGAGGGGGAGCTCCT
CCGGCCAACCGCCGAGCCAGGCGAGCTGCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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