Protein ID | Ophcf2|01908 |
Gene name | |
Location | scaffold_02:2068325..2071106 |
Strand | - |
Gene length (bp) | 2781 |
Transcript length (bp) | 2781 |
Coding sequence length (bp) | 2781 |
Protein length (aa) | 927 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF07724 | AAA_2 | AAA domain (Cdc48 subfamily) | 2.2E-44 | 630 | 791 |
PF17871 | AAA_lid_9 | AAA lid domain | 4.0E-31 | 362 | 462 |
PF00004 | AAA | ATPase family associated with various cellular activities (AAA) | 6.7E-14 | 221 | 338 |
PF00004 | AAA | ATPase family associated with various cellular activities (AAA) | 5.1E-09 | 632 | 750 |
PF10431 | ClpB_D2-small | C-terminal, D2-small domain, of ClpB protein | 1.7E-23 | 798 | 880 |
PF07728 | AAA_5 | AAA domain (dynein-related subfamily) | 1.1E-09 | 631 | 749 |
PF00158 | Sigma54_activat | Sigma-54 interaction domain | 3.2E-06 | 627 | 745 |
PF02861 | Clp_N | Clp amino terminal domain, pathogenicity island component | 5.0E-04 | 110 | 157 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005524 | ATP binding | Yes |
GO:0006355 | regulation of transcription, DNA-templated | Yes |
GO:0008134 | transcription factor binding | Yes |
GO:0016887 | ATP hydrolysis activity | Yes |
GO:0016787 | hydrolase activity | No |
GO:0097159 | organic cyclic compound binding | No |
GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
GO:0031323 | regulation of cellular metabolic process | No |
GO:0003824 | catalytic activity | No |
GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
GO:0010556 | regulation of macromolecule biosynthetic process | No |
GO:1901265 | nucleoside phosphate binding | No |
GO:0017111 | nucleoside-triphosphatase activity | No |
GO:0032559 | adenyl ribonucleotide binding | No |
GO:0005488 | binding | No |
GO:0031326 | regulation of cellular biosynthetic process | No |
GO:0080090 | regulation of primary metabolic process | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0043168 | anion binding | No |
GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
GO:0050789 | regulation of biological process | No |
GO:0050794 | regulation of cellular process | No |
GO:0035639 | purine ribonucleoside triphosphate binding | No |
GO:0065007 | biological regulation | No |
GO:0097367 | carbohydrate derivative binding | No |
GO:0051171 | regulation of nitrogen compound metabolic process | No |
GO:0030554 | adenyl nucleotide binding | No |
GO:0009889 | regulation of biosynthetic process | No |
GO:0008150 | biological_process | No |
GO:0043167 | ion binding | No |
GO:0010468 | regulation of gene expression | No |
GO:0060255 | regulation of macromolecule metabolic process | No |
GO:0036094 | small molecule binding | No |
GO:0016462 | pyrophosphatase activity | No |
GO:0003674 | molecular_function | No |
GO:0005515 | protein binding | No |
GO:0000166 | nucleotide binding | No |
GO:0019222 | regulation of metabolic process | No |
GO:2001141 | regulation of RNA biosynthetic process | No |
GO:0032555 | purine ribonucleotide binding | No |
GO:0051252 | regulation of RNA metabolic process | No |
GO:0017076 | purine nucleotide binding | No |
GO:1903506 | regulation of nucleic acid-templated transcription | No |
GO:0032553 | ribonucleotide binding | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 47 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|01908 MNARMDFTDRAQKAVEDSMALAEQYAHSQLLPVHLAVALLDPPVDQSKDQQNGPSQTNVTLFRQVVERARGDPQL FDRALKKMLVRLPSQDPPPEHISPSPSYHAVLRKAMELQKVQKDTFIGVDHLITALSEDSNIQQALRDSNIPKAK LMQDAVQAIRGTKRVDSKTADTEQENENLAKFTIDMTAMARDKKIDPVIGREEEIRRVVRILSRRTKNNPVLIGE PGVGKTTVVEGLAQRIVNRDVPDNLKHCKLLSLDVGALVAGSKYRGEFEERMKGVLKEIEDSTEMIVLFVDEIHL LMGAGSSGEGGMDAANLLKPMLARGQLHCIGATTLAEYRKYVEKDAAFERRFQQVMVKEPTIPETISILRGLKER YDRHHRVTILDSALVAAANLAARYLTSRRMPDSAIDLVDEAAAAVRVARESQPEIIDSLDRKLRQLMIEIAALEK EQDEASKTRLQQARKDAQNVEEELEPLREKYQNEIKRGEEIHQAKLKLDDLEKRLEDATNNGEHAKAADIKYGAI PEQEAVIHELEARKAAADAALNATGADSGGSMITDVVTADHINEIVARWTGIPVTRLRTSEKEKLVNMEKVLGKV VVGQKEAVQSVANAIRLQRSGLSNPNQPPSFLFCGPSGTGKTLLTKALAEFLFDDAKAMIRFDMSEYQERHALSR MIGAPPGYVGHDSGGQLTEALRRRPFSILLFDEVEKAAKEVLTVLLQLMDDGRITDGQGRVVDAKNCIVVMTSNL GAEFLTRPGAREGKVDGPTRELVMNALRNYFLPEFLNRINSVVIFNRLTRREIRKIVDLRLTEIQRRLEDNGRKV RIEVSDEAKDYLGSSGYSPAYGARPLARLIEKEVLNRLAILILRNNVRDGEIARVELDDGKIVVLSNHPDSEMGE DEDMMDDDDDAVDEVVGENMDEDIYN* |
Coding | >Ophcf2|01908 ATGAACGCCCGCATGGACTTCACCGATAGGGCGCAGAAAGCCGTCGAGGACTCCATGGCCCTCGCCGAGCAATAC GCGCACTCGCAGCTTCTCCCCGTTCACCTGGCTGTCGCCCTTCTCGACCCCCCCGTCGATCAGTCCAAGGACCAG CAGAATGGTCCGTCTCAGACCAATGTCACCCTCTTCAGACAGGTCGTCGAGAGGGCCCGCGGCGATCCGCAGCTC TTCGATCGCGCGCTCAAGAAGATGCTCGTCCGGCTTCCGAGCCAGGACCCTCCGCCTGAGCACATCTCGCCCTCA CCATCATACCACGCCGTCCTGCGCAAGGCAATGGAGCTGCAAAAGGTTCAGAAGGATACCTTTATTGGCGTCGAC CACCTCATTACTGCCTTGTCCGAAGACAGCAATATTCAGCAGGCTCTGAGGGACAGCAACATCCCCAAAGCCAAG CTGATGCAGGATGCTGTCCAGGCTATCCGCGGCACCAAGCGCGTCGACAGCAAGACGGCCGACACGGAGCAGGAG AACGAGAACCTGGCCAAGTTTACCATCGACATGACAGCCATGGCCCGCGATAAGAAGATTGATCCCGTCATTGGA AGGGAGGAGGAGATTCGTCGCGTCGTGCGCATCCTATCTCGACGCACCAAGAACAACCCGGTCCTCATTGGCGAG CCAGGTGTCGGCAAGACAACCGTGGTCGAGGGCCTGGCGCAGCGCATCGTCAACCGGGACGTGCCCGACAACCTC AAACACTGCAAGCTCCTTTCGCTCGATGTCGGCGCTCTCGTCGCCGGCAGCAAGTACCGCGGCGAGTTTGAGGAA CGGATGAAGGGTGTACTCAAAGAGATTGAGGACTCCACAGAGATGATTGTCCTCTTCGTGGACGAGATCCATCTA CTCATGGGTGCCGGCTCTTCCGGCGAGGGAGGCATGGACGCTGCCAACCTGCTCAAGCCCATGCTCGCCCGCGGC CAGCTTCATTGCATCGGCGCCACGACGCTGGCCGAGTATCGGAAGTACGTGGAAAAGGACGCCGCGTTTGAGCGT CGCTTCCAACAAGTCATGGTCAAGGAGCCCACCATCCCCGAGACCATTTCCATCCTGCGAGGCCTCAAAGAACGC TACGACCGCCATCATCGCGTCACTATCCTCGACAGCGCCTTGGTGGCCGCTGCGAACCTGGCCGCGCGCTACTTG ACGTCGAGGCGCATGCCCGACTCGGCTATTGACCTGGTGGACGAGGCGGCGGCTGCCGTGCGGGTGGCGCGAGAG TCGCAGCCCGAGATTATCGATTCGCTCGACCGGAAACTGCGGCAGCTGATGATCGAAATCGCCGCGTTGGAGAAG GAACAAGATGAGGCGTCCAAGACGCGGCTGCAACAGGCCAGGAAGGACGCCCAAAACGTCGAGGAGGAGCTTGAG CCTCTCCGGGAGAAATACCAAAACGAGATCAAGAGGGGCGAGGAGATTCACCAAGCCAAGCTCAAGCTCGACGAC CTCGAGAAGCGACTGGAAGACGCGACCAACAACGGAGAGCACGCCAAGGCGGCCGACATCAAGTACGGTGCCATC CCCGAGCAGGAGGCCGTCATTCACGAGCTCGAGGCCCGCAAGGCGGCCGCCGACGCGGCTCTCAACGCGACGGGC GCTGATAGCGGCGGCTCCATGATTACCGACGTCGTCACGGCCGACCACATCAACGAGATTGTCGCCCGCTGGACC GGCATCCCCGTGACGCGGCTGAGGACGTCGGAGAAGGAGAAGCTGGTCAACATGGAAAAGGTGCTGGGAAAGGTG GTGGTGGGCCAGAAGGAGGCGGTCCAGTCGGTGGCCAACGCCATCCGGCTGCAGCGTTCAGGCCTGAGCAACCCG AACCAACCGCCGAGCTTCCTGTTCTGCGGTCCGTCGGGCACGGGCAAGACGCTGCTGACCAAGGCACTGGCCGAG TTCCTGTTCGACGACGCCAAGGCCATGATCCGGTTTGACATGTCGGAGTATCAGGAGCGGCACGCGCTGAGCCGC ATGATCGGGGCACCGCCCGGCTACGTCGGACACGATTCGGGCGGCCAGCTGACGGAGGCATTGCGGAGGCGGCCC TTTTCCATCCTCTTGTTCGACGAGGTTGAGAAGGCGGCCAAGGAGGTGTTGACGGTTCTGCTGCAGCTGATGGAC GACGGCCGGATCACGGATGGCCAAGGCCGGGTGGTGGACGCAAAGAACTGTATCGTCGTCATGACGTCCAATCTC GGAGCCGAGTTCCTGACGAGGCCCGGGGCACGTGAAGGCAAGGTGGACGGTCCGACGCGGGAGCTGGTGATGAAC GCGCTGCGCAACTACTTCTTGCCCGAGTTCCTGAACCGCATCAACTCGGTCGTCATCTTCAACCGGCTGACGCGG CGGGAGATTCGCAAGATTGTCGACCTGCGCTTGACCGAGATCCAGAGGCGGCTCGAGGACAATGGGCGCAAGGTG CGGATCGAGGTCTCGGACGAGGCCAAGGACTATCTGGGCAGCTCGGGATACTCGCCGGCGTACGGGGCACGGCCG TTGGCGCGGCTGATTGAGAAGGAGGTGCTGAACCGGCTGGCCATCCTGATTCTGCGCAACAATGTGCGTGACGGC GAGATTGCCAGGGTCGAGCTCGACGACGGGAAGATTGTGGTGTTGTCGAATCATCCTGATAGCGAGATGGGCGAG GACGAGGACATGATGGATGACGATGACGATGCGGTGGATGAGGTGGTTGGCGAAAATATGGATGAGGATATCTAT AACTAG |
Transcript | >Ophcf2|01908 ATGAACGCCCGCATGGACTTCACCGATAGGGCGCAGAAAGCCGTCGAGGACTCCATGGCCCTCGCCGAGCAATAC GCGCACTCGCAGCTTCTCCCCGTTCACCTGGCTGTCGCCCTTCTCGACCCCCCCGTCGATCAGTCCAAGGACCAG CAGAATGGTCCGTCTCAGACCAATGTCACCCTCTTCAGACAGGTCGTCGAGAGGGCCCGCGGCGATCCGCAGCTC TTCGATCGCGCGCTCAAGAAGATGCTCGTCCGGCTTCCGAGCCAGGACCCTCCGCCTGAGCACATCTCGCCCTCA CCATCATACCACGCCGTCCTGCGCAAGGCAATGGAGCTGCAAAAGGTTCAGAAGGATACCTTTATTGGCGTCGAC CACCTCATTACTGCCTTGTCCGAAGACAGCAATATTCAGCAGGCTCTGAGGGACAGCAACATCCCCAAAGCCAAG CTGATGCAGGATGCTGTCCAGGCTATCCGCGGCACCAAGCGCGTCGACAGCAAGACGGCCGACACGGAGCAGGAG AACGAGAACCTGGCCAAGTTTACCATCGACATGACAGCCATGGCCCGCGATAAGAAGATTGATCCCGTCATTGGA AGGGAGGAGGAGATTCGTCGCGTCGTGCGCATCCTATCTCGACGCACCAAGAACAACCCGGTCCTCATTGGCGAG CCAGGTGTCGGCAAGACAACCGTGGTCGAGGGCCTGGCGCAGCGCATCGTCAACCGGGACGTGCCCGACAACCTC AAACACTGCAAGCTCCTTTCGCTCGATGTCGGCGCTCTCGTCGCCGGCAGCAAGTACCGCGGCGAGTTTGAGGAA CGGATGAAGGGTGTACTCAAAGAGATTGAGGACTCCACAGAGATGATTGTCCTCTTCGTGGACGAGATCCATCTA CTCATGGGTGCCGGCTCTTCCGGCGAGGGAGGCATGGACGCTGCCAACCTGCTCAAGCCCATGCTCGCCCGCGGC CAGCTTCATTGCATCGGCGCCACGACGCTGGCCGAGTATCGGAAGTACGTGGAAAAGGACGCCGCGTTTGAGCGT CGCTTCCAACAAGTCATGGTCAAGGAGCCCACCATCCCCGAGACCATTTCCATCCTGCGAGGCCTCAAAGAACGC TACGACCGCCATCATCGCGTCACTATCCTCGACAGCGCCTTGGTGGCCGCTGCGAACCTGGCCGCGCGCTACTTG ACGTCGAGGCGCATGCCCGACTCGGCTATTGACCTGGTGGACGAGGCGGCGGCTGCCGTGCGGGTGGCGCGAGAG TCGCAGCCCGAGATTATCGATTCGCTCGACCGGAAACTGCGGCAGCTGATGATCGAAATCGCCGCGTTGGAGAAG GAACAAGATGAGGCGTCCAAGACGCGGCTGCAACAGGCCAGGAAGGACGCCCAAAACGTCGAGGAGGAGCTTGAG CCTCTCCGGGAGAAATACCAAAACGAGATCAAGAGGGGCGAGGAGATTCACCAAGCCAAGCTCAAGCTCGACGAC CTCGAGAAGCGACTGGAAGACGCGACCAACAACGGAGAGCACGCCAAGGCGGCCGACATCAAGTACGGTGCCATC CCCGAGCAGGAGGCCGTCATTCACGAGCTCGAGGCCCGCAAGGCGGCCGCCGACGCGGCTCTCAACGCGACGGGC GCTGATAGCGGCGGCTCCATGATTACCGACGTCGTCACGGCCGACCACATCAACGAGATTGTCGCCCGCTGGACC GGCATCCCCGTGACGCGGCTGAGGACGTCGGAGAAGGAGAAGCTGGTCAACATGGAAAAGGTGCTGGGAAAGGTG GTGGTGGGCCAGAAGGAGGCGGTCCAGTCGGTGGCCAACGCCATCCGGCTGCAGCGTTCAGGCCTGAGCAACCCG AACCAACCGCCGAGCTTCCTGTTCTGCGGTCCGTCGGGCACGGGCAAGACGCTGCTGACCAAGGCACTGGCCGAG TTCCTGTTCGACGACGCCAAGGCCATGATCCGGTTTGACATGTCGGAGTATCAGGAGCGGCACGCGCTGAGCCGC ATGATCGGGGCACCGCCCGGCTACGTCGGACACGATTCGGGCGGCCAGCTGACGGAGGCATTGCGGAGGCGGCCC TTTTCCATCCTCTTGTTCGACGAGGTTGAGAAGGCGGCCAAGGAGGTGTTGACGGTTCTGCTGCAGCTGATGGAC GACGGCCGGATCACGGATGGCCAAGGCCGGGTGGTGGACGCAAAGAACTGTATCGTCGTCATGACGTCCAATCTC GGAGCCGAGTTCCTGACGAGGCCCGGGGCACGTGAAGGCAAGGTGGACGGTCCGACGCGGGAGCTGGTGATGAAC GCGCTGCGCAACTACTTCTTGCCCGAGTTCCTGAACCGCATCAACTCGGTCGTCATCTTCAACCGGCTGACGCGG CGGGAGATTCGCAAGATTGTCGACCTGCGCTTGACCGAGATCCAGAGGCGGCTCGAGGACAATGGGCGCAAGGTG CGGATCGAGGTCTCGGACGAGGCCAAGGACTATCTGGGCAGCTCGGGATACTCGCCGGCGTACGGGGCACGGCCG TTGGCGCGGCTGATTGAGAAGGAGGTGCTGAACCGGCTGGCCATCCTGATTCTGCGCAACAATGTGCGTGACGGC GAGATTGCCAGGGTCGAGCTCGACGACGGGAAGATTGTGGTGTTGTCGAATCATCCTGATAGCGAGATGGGCGAG GACGAGGACATGATGGATGACGATGACGATGCGGTGGATGAGGTGGTTGGCGAAAATATGGATGAGGATATCTAT AACTAG |
Gene | >Ophcf2|01908 ATGAACGCCCGCATGGACTTCACCGATAGGGCGCAGAAAGCCGTCGAGGACTCCATGGCCCTCGCCGAGCAATAC GCGCACTCGCAGCTTCTCCCCGTTCACCTGGCTGTCGCCCTTCTCGACCCCCCCGTCGATCAGTCCAAGGACCAG CAGAATGGTCCGTCTCAGACCAATGTCACCCTCTTCAGACAGGTCGTCGAGAGGGCCCGCGGCGATCCGCAGCTC TTCGATCGCGCGCTCAAGAAGATGCTCGTCCGGCTTCCGAGCCAGGACCCTCCGCCTGAGCACATCTCGCCCTCA CCATCATACCACGCCGTCCTGCGCAAGGCAATGGAGCTGCAAAAGGTTCAGAAGGATACCTTTATTGGCGTCGAC CACCTCATTACTGCCTTGTCCGAAGACAGCAATATTCAGCAGGCTCTGAGGGACAGCAACATCCCCAAAGCCAAG CTGATGCAGGATGCTGTCCAGGCTATCCGCGGCACCAAGCGCGTCGACAGCAAGACGGCCGACACGGAGCAGGAG AACGAGAACCTGGCCAAGTTTACCATCGACATGACAGCCATGGCCCGCGATAAGAAGATTGATCCCGTCATTGGA AGGGAGGAGGAGATTCGTCGCGTCGTGCGCATCCTATCTCGACGCACCAAGAACAACCCGGTCCTCATTGGCGAG CCAGGTGTCGGCAAGACAACCGTGGTCGAGGGCCTGGCGCAGCGCATCGTCAACCGGGACGTGCCCGACAACCTC AAACACTGCAAGCTCCTTTCGCTCGATGTCGGCGCTCTCGTCGCCGGCAGCAAGTACCGCGGCGAGTTTGAGGAA CGGATGAAGGGTGTACTCAAAGAGATTGAGGACTCCACAGAGATGATTGTCCTCTTCGTGGACGAGATCCATCTA CTCATGGGTGCCGGCTCTTCCGGCGAGGGAGGCATGGACGCTGCCAACCTGCTCAAGCCCATGCTCGCCCGCGGC CAGCTTCATTGCATCGGCGCCACGACGCTGGCCGAGTATCGGAAGTACGTGGAAAAGGACGCCGCGTTTGAGCGT CGCTTCCAACAAGTCATGGTCAAGGAGCCCACCATCCCCGAGACCATTTCCATCCTGCGAGGCCTCAAAGAACGC TACGACCGCCATCATCGCGTCACTATCCTCGACAGCGCCTTGGTGGCCGCTGCGAACCTGGCCGCGCGCTACTTG ACGTCGAGGCGCATGCCCGACTCGGCTATTGACCTGGTGGACGAGGCGGCGGCTGCCGTGCGGGTGGCGCGAGAG TCGCAGCCCGAGATTATCGATTCGCTCGACCGGAAACTGCGGCAGCTGATGATCGAAATCGCCGCGTTGGAGAAG GAACAAGATGAGGCGTCCAAGACGCGGCTGCAACAGGCCAGGAAGGACGCCCAAAACGTCGAGGAGGAGCTTGAG CCTCTCCGGGAGAAATACCAAAACGAGATCAAGAGGGGCGAGGAGATTCACCAAGCCAAGCTCAAGCTCGACGAC CTCGAGAAGCGACTGGAAGACGCGACCAACAACGGAGAGCACGCCAAGGCGGCCGACATCAAGTACGGTGCCATC CCCGAGCAGGAGGCCGTCATTCACGAGCTCGAGGCCCGCAAGGCGGCCGCCGACGCGGCTCTCAACGCGACGGGC GCTGATAGCGGCGGCTCCATGATTACCGACGTCGTCACGGCCGACCACATCAACGAGATTGTCGCCCGCTGGACC GGCATCCCCGTGACGCGGCTGAGGACGTCGGAGAAGGAGAAGCTGGTCAACATGGAAAAGGTGCTGGGAAAGGTG GTGGTGGGCCAGAAGGAGGCGGTCCAGTCGGTGGCCAACGCCATCCGGCTGCAGCGTTCAGGCCTGAGCAACCCG AACCAACCGCCGAGCTTCCTGTTCTGCGGTCCGTCGGGCACGGGCAAGACGCTGCTGACCAAGGCACTGGCCGAG TTCCTGTTCGACGACGCCAAGGCCATGATCCGGTTTGACATGTCGGAGTATCAGGAGCGGCACGCGCTGAGCCGC ATGATCGGGGCACCGCCCGGCTACGTCGGACACGATTCGGGCGGCCAGCTGACGGAGGCATTGCGGAGGCGGCCC TTTTCCATCCTCTTGTTCGACGAGGTTGAGAAGGCGGCCAAGGAGGTGTTGACGGTTCTGCTGCAGCTGATGGAC GACGGCCGGATCACGGATGGCCAAGGCCGGGTGGTGGACGCAAAGAACTGTATCGTCGTCATGACGTCCAATCTC GGAGCCGAGTTCCTGACGAGGCCCGGGGCACGTGAAGGCAAGGTGGACGGTCCGACGCGGGAGCTGGTGATGAAC GCGCTGCGCAACTACTTCTTGCCCGAGTTCCTGAACCGCATCAACTCGGTCGTCATCTTCAACCGGCTGACGCGG CGGGAGATTCGCAAGATTGTCGACCTGCGCTTGACCGAGATCCAGAGGCGGCTCGAGGACAATGGGCGCAAGGTG CGGATCGAGGTCTCGGACGAGGCCAAGGACTATCTGGGCAGCTCGGGATACTCGCCGGCGTACGGGGCACGGCCG TTGGCGCGGCTGATTGAGAAGGAGGTGCTGAACCGGCTGGCCATCCTGATTCTGCGCAACAATGTGCGTGACGGC GAGATTGCCAGGGTCGAGCTCGACGACGGGAAGATTGTGGTGTTGTCGAATCATCCTGATAGCGAGATGGGCGAG GACGAGGACATGATGGATGACGATGACGATGCGGTGGATGAGGTGGTTGGCGAAAATATGGATGAGGATATCTAT AACTAG |