© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01903 |
| Gene name | |
| Location | scaffold_02:2058279..2059735 |
| Strand | - |
| Gene length (bp) | 1456 |
| Transcript length (bp) | 1341 |
| Coding sequence length (bp) | 1341 |
| Protein length (aa) | 447 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16363 | GDP_Man_Dehyd | GDP-mannose 4,6 dehydratase | 2.5E-69 | 72 | 378 |
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 2.2E-59 | 71 | 312 |
| PF02719 | Polysacc_synt_2 | Polysaccharide biosynthesis protein | 6.9E-22 | 71 | 331 |
| PF01073 | 3Beta_HSD | 3-beta hydroxysteroid dehydrogenase/isomerase family | 3.4E-21 | 73 | 293 |
| PF04321 | RmlD_sub_bind | RmlD substrate binding domain | 4.1E-18 | 70 | 334 |
| PF07993 | NAD_binding_4 | Male sterility protein | 2.6E-16 | 73 | 252 |
| PF13460 | NAD_binding_10 | NAD(P)H-binding | 2.7E-06 | 115 | 246 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006694 | steroid biosynthetic process | Yes |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Yes |
| GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity | Yes |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0016229 | steroid dehydrogenase activity | No |
| GO:0009058 | biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0008202 | steroid metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0033764 | steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:0008150 | biological_process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.6084 | 0.446 | 0.1711 | 0.1077 | 0.3784 | 0.0697 | 0.0537 | 0.261 | 0.1164 | 0.2131 |
| Orthofinder run ID | 4 |
| Orthogroup | 668 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01903 MTRRPPPQHLHWQGGHRQDCRQAEMPSTHSSPSATVNGANTKYPRDVDVWKHAPILKGTTQFAPRSDVRNIMITG GAGFIGSWVVRHLTVTYPQAYNIVSFDKLDYCATLNNTRPLNDRRNFTFYHGDLTNPSEVLDCMERYHVDTVLHF AAQSHVDLSFGNSYGFTHANVYGTHVLLESANKVGVRRFIHVSTDEVYGEVKEGDDERLETSILAPTNPYAASKA AAEMLVQSYQKSFKLPAIIVRSNNVYGPHQYPEKIIPKFACLVNRHRPVVLHGDGSPRRRYLYASDAADAFDTIL HKGQVGQIYNVGSSDEVSNLALSGKILDAMGIDGDDEERSRKWIKWTDDRPFNDRRYAVDGTKLRQLGWQPRMSL DRGLLLTVDWYRRFGETWWGDIGHVLTPFPVVSHGDVMPDEGRNMTDGPSMLTGDLKGPTATLMSLGRVKA* |
| Coding | >Ophcf2|01903 ATGACTCGGCGTCCTCCTCCCCAGCATCTTCACTGGCAGGGAGGCCACAGACAAGATTGTCGTCAAGCCGAGATG CCTTCGACCCATTCATCTCCGTCAGCGACGGTCAACGGTGCAAATACAAAGTACCCGCGAGATGTCGACGTCTGG AAGCACGCGCCCATCCTCAAGGGCACCACGCAGTTTGCGCCTCGCTCTGATGTCCGCAACATCATGATCACGGGC GGCGCAGGCTTCATCGGCTCTTGGGTTGTTCGCCATCTCACAGTGACCTACCCTCAAGCCTACAACATCGTCTCC TTCGACAAGCTCGATTACTGTGCTACCCTCAACAACACCCGTCCTCTCAACGATAGGCGCAACTTCACCTTTTAC CACGGCGATCTCACCAACCCTTCTGAAGTGCTCGACTGCATGGAACGCTACCATGTCGATACCGTTCTGCACTTT GCCGCCCAGTCACACGTCGATCTGAGCTTTGGCAACTCGTACGGCTTCACGCATGCCAACGTCTACGGAACCCAC GTCCTCCTCGAGAGCGCCAACAAGGTGGGCGTCCGGCGCTTCATTCACGTCTCCACCGACGAGGTCTACGGTGAG GTCAAGGAAGGCGACGACGAGCGACTCGAGACGAGCATTCTCGCACCCACAAACCCTTATGCCGCGAGCAAGGCG GCCGCTGAGATGCTGGTGCAGTCGTACCAAAAGAGTTTCAAGTTGCCGGCCATCATCGTCCGCAGCAACAACGTT TATGGACCGCACCAATACCCCGAAAAAATCATTCCCAAATTTGCTTGCCTCGTCAATAGGCATCGACCCGTGGTG CTGCACGGCGACGGTAGCCCCAGGCGACGATACCTCTACGCCAGCGATGCCGCCGACGCCTTCGACACCATTCTC CACAAGGGTCAGGTCGGTCAGATCTACAACGTCGGCTCCTCCGACGAGGTTTCCAACTTGGCGCTCAGTGGCAAG ATACTGGACGCCATGGGCATCGACGGAGACGACGAGGAGCGCTCCCGCAAATGGATCAAATGGACCGACGACAGG CCCTTTAACGATCGCCGGTATGCCGTTGACGGGACCAAACTGCGGCAACTGGGCTGGCAACCCAGAATGAGTCTC GACAGGGGGCTTTTGCTCACCGTCGACTGGTATCGCCGCTTCGGAGAGACGTGGTGGGGAGACATTGGTCACGTC CTGACGCCCTTTCCCGTCGTCAGCCACGGCGATGTGATGCCCGACGAGGGACGCAACATGACCGACGGGCCATCG ATGCTCACCGGCGACCTGAAAGGGCCAACGGCGACACTGATGTCCTTGGGACGAGTCAAGGCTTAA |
| Transcript | >Ophcf2|01903 ATGACTCGGCGTCCTCCTCCCCAGCATCTTCACTGGCAGGGAGGCCACAGACAAGATTGTCGTCAAGCCGAGATG CCTTCGACCCATTCATCTCCGTCAGCGACGGTCAACGGTGCAAATACAAAGTACCCGCGAGATGTCGACGTCTGG AAGCACGCGCCCATCCTCAAGGGCACCACGCAGTTTGCGCCTCGCTCTGATGTCCGCAACATCATGATCACGGGC GGCGCAGGCTTCATCGGCTCTTGGGTTGTTCGCCATCTCACAGTGACCTACCCTCAAGCCTACAACATCGTCTCC TTCGACAAGCTCGATTACTGTGCTACCCTCAACAACACCCGTCCTCTCAACGATAGGCGCAACTTCACCTTTTAC CACGGCGATCTCACCAACCCTTCTGAAGTGCTCGACTGCATGGAACGCTACCATGTCGATACCGTTCTGCACTTT GCCGCCCAGTCACACGTCGATCTGAGCTTTGGCAACTCGTACGGCTTCACGCATGCCAACGTCTACGGAACCCAC GTCCTCCTCGAGAGCGCCAACAAGGTGGGCGTCCGGCGCTTCATTCACGTCTCCACCGACGAGGTCTACGGTGAG GTCAAGGAAGGCGACGACGAGCGACTCGAGACGAGCATTCTCGCACCCACAAACCCTTATGCCGCGAGCAAGGCG GCCGCTGAGATGCTGGTGCAGTCGTACCAAAAGAGTTTCAAGTTGCCGGCCATCATCGTCCGCAGCAACAACGTT TATGGACCGCACCAATACCCCGAAAAAATCATTCCCAAATTTGCTTGCCTCGTCAATAGGCATCGACCCGTGGTG CTGCACGGCGACGGTAGCCCCAGGCGACGATACCTCTACGCCAGCGATGCCGCCGACGCCTTCGACACCATTCTC CACAAGGGTCAGGTCGGTCAGATCTACAACGTCGGCTCCTCCGACGAGGTTTCCAACTTGGCGCTCAGTGGCAAG ATACTGGACGCCATGGGCATCGACGGAGACGACGAGGAGCGCTCCCGCAAATGGATCAAATGGACCGACGACAGG CCCTTTAACGATCGCCGGTATGCCGTTGACGGGACCAAACTGCGGCAACTGGGCTGGCAACCCAGAATGAGTCTC GACAGGGGGCTTTTGCTCACCGTCGACTGGTATCGCCGCTTCGGAGAGACGTGGTGGGGAGACATTGGTCACGTC CTGACGCCCTTTCCCGTCGTCAGCCACGGCGATGTGATGCCCGACGAGGGACGCAACATGACCGACGGGCCATCG ATGCTCACCGGCGACCTGAAAGGGCCAACGGCGACACTGATGTCCTTGGGACGAGTCAAGGCTTAA |
| Gene | >Ophcf2|01903 ATGACTCGGCGTCCTCCTCCCCAGCATCTTCACTGGCAGGGAGGCCACAGACAAGATTGTCGTCAAGCCGAGATG CCTTCGACCCATTCATCTCCGTCAGCGACGGTCAACGGTGGTGAGCGCGGCCCTCGCTGTCTGATAATTGTTCGT TTCCTGACAAAGGCGATGCAGCAAATACAAAGTACCCGCGAGATGTCGACGTCTGGAAGCACGCGCCCATCCTCA AGGGCACCACGCAGTTTGCGCCTCGCTCTGATGTCCGCAACATCATGATCACGGGCGGCGCAGGCTTCATCGGCT CTTGGGTTGTTCGCCATCTCACAGTGACCTACCCTCAAGCCTACAACATCGTCTCCTTCGACAAGCTCGATTACT GTGCTACCCTCAACAACACCCGTCCTCTCAACGATAGGCGCAACTTCACCTTTTACCACGGCGATCTCACCAACC CTTCTGAAGTGCTCGACTGCATGGAACGCTACCATGTCGATACCGTTCTGCACTTTGCCGCCCAGTCACACGTCG ATCTGAGCTTTGGCAACTCGTACGGCTTCACGCATGCCAACGTCTACGGAACCCACGTCCTCCTCGAGAGCGCCA ACAAGGTGGGCGTCCGGCGCTTCATTCACGTCTCCACCGACGAGGTCTACGGTGAGGTCAAGGAAGGCGACGACG AGCGACTCGAGACGAGCATTCTCGCACCCACAAACCCTTATGCCGCGAGCAAGGCGGCCGCTGAGATGCTGGTGC AGTCGTACCAAAAGAGTTTCAAGTTGCCGGCCATCATCGTCCGCAGCAACAACGTTTATGGACCGCACCAATACC CCGAAAGTGCGCATCTCGTCCTGACGCCGTGCTCTGGCCAATCGCGCTGACTTGTCCCCGTCAAGAAATCATTCC CAAATTTGCTTGCCTCGTCAATAGGCATCGACCCGTGGTGCTGCACGGCGACGGTAGCCCCAGGCGACGATACCT CTACGCCAGCGATGCCGCCGACGCCTTCGACACCATTCTCCACAAGGGTCAGGTCGGTCAGATCTACAACGTCGG CTCCTCCGACGAGGTTTCCAACTTGGCGCTCAGTGGCAAGATACTGGACGCCATGGGCATCGACGGAGACGACGA GGAGCGCTCCCGCAAATGGATCAAATGGACCGACGACAGGCCCTTTAACGATCGCCGGTATGCCGTTGACGGGAC CAAACTGCGGCAACTGGGCTGGCAACCCAGAATGAGTCTCGACAGGGGGCTTTTGCTCACCGTCGACTGGTATCG CCGCTTCGGAGAGACGTGGTGGGGAGACATTGGTCACGTCCTGACGCCCTTTCCCGTCGTCAGCCACGGCGATGT GATGCCCGACGAGGGACGCAACATGACCGACGGGCCATCGATGCTCACCGGCGACCTGAAAGGGCCAACGGCGAC ACTGATGTCCTTGGGACGAGTCAAGGCTTAA |