© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01900 |
| Gene name | |
| Location | scaffold_02:2047419..2048883 |
| Strand | - |
| Gene length (bp) | 1464 |
| Transcript length (bp) | 1404 |
| Coding sequence length (bp) | 1404 |
| Protein length (aa) | 468 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00026 | Asp | Eukaryotic aspartyl protease | 3.2E-55 | 55 | 399 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 17 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 444 | 466 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01900 MRSFALLLVGWWVASGAGEEAKVLKINVRRGIVEQSALQRRDTLNSTLRNRIGLYTIDIGIGNPPQQISALIDTG SSDALINTNVSQLCEQKSRPCAPSGTYNANASSTSQYINNLFNISYVDGSGAGGDFVADDVRISGKQVKGAQLGV AYRSSSPQSVLGIGLASNEALAAKGRRKGGDGSGEYVNLPAKMVQDGVISSNSYSLWLNDIDSPEGSILFGGVDT ARFQEPLVSMPMQKVDGRFSEFFITMTGLQLDNSSLASNLRLAVLLDSGSTFTYLPDKVAQSVYSSLNARFDSQS GAAFVPCSLAKQSRSLRFDFTSPASVTVPVSELVIRPEKLSAKPVSFGNGVPACYLGIMPTSGSGGGAGSSTASV LGDTFLRSAYVVYDLQGHTIALANTVYNATGSDIKEIPSDGKIPGAVEARDPVRATSGIPGQRSGAAGGGTAASP FAAVVLGVVVSVMICWS* |
| Coding | >Ophcf2|01900 ATGAGGTCTTTTGCTCTTCTTCTGGTGGGCTGGTGGGTGGCCTCTGGGGCTGGGGAGGAGGCCAAGGTGTTGAAG ATTAATGTTCGGAGGGGGATTGTTGAGCAGTCTGCTTTGCAGAGGAGGGATACGCTCAACTCGACGCTGAGGAAT AGGATCGGACTCTACACCATCGACATTGGCATCGGAAACCCCCCCCAACAAATCTCCGCCCTCATCGACACCGGA AGCAGCGACGCCCTGATAAACACAAACGTCTCGCAACTCTGCGAGCAGAAATCCCGCCCCTGCGCCCCATCAGGA ACCTACAACGCCAACGCATCCTCAACATCCCAGTATATAAACAACCTCTTCAACATCTCCTACGTCGACGGTTCC GGCGCCGGAGGCGACTTCGTGGCTGACGACGTGCGCATCTCTGGGAAGCAGGTCAAGGGCGCGCAGCTGGGGGTC GCCTATCGGAGTTCGTCGCCGCAGTCCGTCTTGGGGATCGGTTTGGCTTCTAACGAGGCTTTGGCGGCCAAGGGG AGGAGGAAAGGAGGTGATGGGTCGGGGGAATACGTCAACTTGCCGGCCAAGATGGTTCAGGACGGCGTCATCTCA TCCAATTCATATAGCCTCTGGCTCAACGACATCGATTCGCCTGAAGGGTCCATCCTCTTCGGTGGCGTCGATACA GCCCGCTTCCAAGAACCACTGGTCAGCATGCCCATGCAGAAAGTCGATGGCCGCTTCTCCGAATTCTTCATCACC ATGACAGGCCTTCAGCTCGACAACAGCTCCCTAGCATCAAACCTCCGCCTCGCCGTCCTCCTCGACTCAGGCTCA ACGTTCACATACCTCCCCGATAAAGTCGCCCAGTCGGTATACTCGAGTCTCAACGCCCGCTTCGATAGCCAGTCG GGCGCCGCCTTCGTCCCTTGCTCGCTGGCAAAGCAGTCGCGATCCCTACGCTTCGACTTCACCAGTCCAGCCTCC GTGACGGTTCCCGTAAGTGAACTCGTCATTCGGCCCGAGAAACTGTCTGCCAAACCTGTCAGCTTCGGGAATGGT GTTCCGGCTTGTTACCTTGGAATCATGCCCACCAGCGGCAGCGGAGGCGGCGCAGGGAGCAGCACGGCCAGCGTA CTGGGAGATACCTTCCTGCGCAGCGCATACGTCGTCTATGATCTTCAGGGACATACTATTGCGCTGGCAAACACG GTATACAACGCCACGGGGTCTGATATCAAGGAGATTCCCTCGGACGGTAAGATCCCCGGCGCTGTCGAAGCCCGC GATCCTGTACGTGCTACTTCGGGAATTCCGGGCCAGAGATCGGGGGCTGCTGGTGGGGGGACGGCCGCGTCTCCG TTTGCGGCTGTTGTGCTGGGTGTTGTTGTCAGCGTGATGATTTGCTGGTCCTGA |
| Transcript | >Ophcf2|01900 ATGAGGTCTTTTGCTCTTCTTCTGGTGGGCTGGTGGGTGGCCTCTGGGGCTGGGGAGGAGGCCAAGGTGTTGAAG ATTAATGTTCGGAGGGGGATTGTTGAGCAGTCTGCTTTGCAGAGGAGGGATACGCTCAACTCGACGCTGAGGAAT AGGATCGGACTCTACACCATCGACATTGGCATCGGAAACCCCCCCCAACAAATCTCCGCCCTCATCGACACCGGA AGCAGCGACGCCCTGATAAACACAAACGTCTCGCAACTCTGCGAGCAGAAATCCCGCCCCTGCGCCCCATCAGGA ACCTACAACGCCAACGCATCCTCAACATCCCAGTATATAAACAACCTCTTCAACATCTCCTACGTCGACGGTTCC GGCGCCGGAGGCGACTTCGTGGCTGACGACGTGCGCATCTCTGGGAAGCAGGTCAAGGGCGCGCAGCTGGGGGTC GCCTATCGGAGTTCGTCGCCGCAGTCCGTCTTGGGGATCGGTTTGGCTTCTAACGAGGCTTTGGCGGCCAAGGGG AGGAGGAAAGGAGGTGATGGGTCGGGGGAATACGTCAACTTGCCGGCCAAGATGGTTCAGGACGGCGTCATCTCA TCCAATTCATATAGCCTCTGGCTCAACGACATCGATTCGCCTGAAGGGTCCATCCTCTTCGGTGGCGTCGATACA GCCCGCTTCCAAGAACCACTGGTCAGCATGCCCATGCAGAAAGTCGATGGCCGCTTCTCCGAATTCTTCATCACC ATGACAGGCCTTCAGCTCGACAACAGCTCCCTAGCATCAAACCTCCGCCTCGCCGTCCTCCTCGACTCAGGCTCA ACGTTCACATACCTCCCCGATAAAGTCGCCCAGTCGGTATACTCGAGTCTCAACGCCCGCTTCGATAGCCAGTCG GGCGCCGCCTTCGTCCCTTGCTCGCTGGCAAAGCAGTCGCGATCCCTACGCTTCGACTTCACCAGTCCAGCCTCC GTGACGGTTCCCGTAAGTGAACTCGTCATTCGGCCCGAGAAACTGTCTGCCAAACCTGTCAGCTTCGGGAATGGT GTTCCGGCTTGTTACCTTGGAATCATGCCCACCAGCGGCAGCGGAGGCGGCGCAGGGAGCAGCACGGCCAGCGTA CTGGGAGATACCTTCCTGCGCAGCGCATACGTCGTCTATGATCTTCAGGGACATACTATTGCGCTGGCAAACACG GTATACAACGCCACGGGGTCTGATATCAAGGAGATTCCCTCGGACGGTAAGATCCCCGGCGCTGTCGAAGCCCGC GATCCTGTACGTGCTACTTCGGGAATTCCGGGCCAGAGATCGGGGGCTGCTGGTGGGGGGACGGCCGCGTCTCCG TTTGCGGCTGTTGTGCTGGGTGTTGTTGTCAGCGTGATGATTTGCTGGTCCTGA |
| Gene | >Ophcf2|01900 ATGAGGTCTTTTGCTCTTCTTCTGGTGGGCTGGTGGGTGGCCTCTGGGGCTGGGGAGGAGGCCAAGGTGTTGAAG ATTAATGTTCGGAGGGGGATTGTTGAGCAGTCTGCTTTGCAGAGGAGGGATACGCTCAACTCGACGCTGAGGAAT AGGGTGAGTATATCCCTCTTCGAGTTTCTGAAGAGTAACCACTGACGAAGCCATTCCATTCAGATCGGACTCTAC ACCATCGACATTGGCATCGGAAACCCCCCCCAACAAATCTCCGCCCTCATCGACACCGGAAGCAGCGACGCCCTG ATAAACACAAACGTCTCGCAACTCTGCGAGCAGAAATCCCGCCCCTGCGCCCCATCAGGAACCTACAACGCCAAC GCATCCTCAACATCCCAGTATATAAACAACCTCTTCAACATCTCCTACGTCGACGGTTCCGGCGCCGGAGGCGAC TTCGTGGCTGACGACGTGCGCATCTCTGGGAAGCAGGTCAAGGGCGCGCAGCTGGGGGTCGCCTATCGGAGTTCG TCGCCGCAGTCCGTCTTGGGGATCGGTTTGGCTTCTAACGAGGCTTTGGCGGCCAAGGGGAGGAGGAAAGGAGGT GATGGGTCGGGGGAATACGTCAACTTGCCGGCCAAGATGGTTCAGGACGGCGTCATCTCATCCAATTCATATAGC CTCTGGCTCAACGACATCGATTCGCCTGAAGGGTCCATCCTCTTCGGTGGCGTCGATACAGCCCGCTTCCAAGAA CCACTGGTCAGCATGCCCATGCAGAAAGTCGATGGCCGCTTCTCCGAATTCTTCATCACCATGACAGGCCTTCAG CTCGACAACAGCTCCCTAGCATCAAACCTCCGCCTCGCCGTCCTCCTCGACTCAGGCTCAACGTTCACATACCTC CCCGATAAAGTCGCCCAGTCGGTATACTCGAGTCTCAACGCCCGCTTCGATAGCCAGTCGGGCGCCGCCTTCGTC CCTTGCTCGCTGGCAAAGCAGTCGCGATCCCTACGCTTCGACTTCACCAGTCCAGCCTCCGTGACGGTTCCCGTA AGTGAACTCGTCATTCGGCCCGAGAAACTGTCTGCCAAACCTGTCAGCTTCGGGAATGGTGTTCCGGCTTGTTAC CTTGGAATCATGCCCACCAGCGGCAGCGGAGGCGGCGCAGGGAGCAGCACGGCCAGCGTACTGGGAGATACCTTC CTGCGCAGCGCATACGTCGTCTATGATCTTCAGGGACATACTATTGCGCTGGCAAACACGGTATACAACGCCACG GGGTCTGATATCAAGGAGATTCCCTCGGACGGTAAGATCCCCGGCGCTGTCGAAGCCCGCGATCCTGTACGTGCT ACTTCGGGAATTCCGGGCCAGAGATCGGGGGCTGCTGGTGGGGGGACGGCCGCGTCTCCGTTTGCGGCTGTTGTG CTGGGTGTTGTTGTCAGCGTGATGATTTGCTGGTCCTGA |