© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01861 |
| Gene name | |
| Location | scaffold_02:1939027..1940865 |
| Strand | - |
| Gene length (bp) | 1838 |
| Transcript length (bp) | 1470 |
| Coding sequence length (bp) | 1470 |
| Protein length (aa) | 490 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00067 | p450 | Cytochrome P450 | 9.0E-48 | 37 | 465 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | Yes |
| GO:0020037 | heme binding | Yes |
| GO:0005506 | iron ion binding | Yes |
| GO:0004497 | monooxygenase activity | Yes |
| GO:0043169 | cation binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0046906 | tetrapyrrole binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.102 | 0.1184 | 0.0544 | 0.0991 | 0.1588 | 0.0153 | 0.8763 | 0.2902 | 0.5548 | 0.0177 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 25 | 18 |
| Orthofinder run ID | 4 |
| Orthogroup | 5289 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01861 MLISSPFFALCALSALGLLLLLRLIRCLSSPLRSLPGPPSSLFTSLVLRWRELGAGRTAYIHGLHRQYGSVVRVA PNEVSFTSWLAIKEIYCSGGSGYDKSDFYDMFKIFGRRTMFTMLNRADHAKRKRIIADRYANFNVMRGLALDGIQ HRSRTFLRRCASASQSQTSNIFTALHAYACDCVTHHLFHPHGSDCLESQADQDMMHQVTADDSIQNRLIEHHYPI LHRLFARLLRLFIRPREVPLVDDYVWTTIKHSDVAPFTLLSRFKDKGGLVDSTDVAAECLDHMVAGIDTTGDSLC FLMWELSQPRSVSYQRRLTEELRSNSDTPIEQLPFLDAVVNEALRCYPAIPMSLPRVVPRGGRSVDGVWLPAQTV VSCQPYSVHRIDERVFPDPDVFDPDRWLRSEGDQERRRLLFAFSNGGRGCIGKHLALAEMKTLLRDVYSAFSTQA DSSMTEQSMAMSDQLISTQPLGRRCLLQFRPIDEAGVCD* |
| Coding | >Ophcf2|01861 ATGCTCATCTCATCCCCCTTCTTTGCCCTCTGTGCGCTCTCCGCCCTGGGCTTGCTACTCCTCCTGCGGCTGATT CGCTGCCTCTCATCGCCACTTCGCAGCCTGCCGGGCCCGCCCTCGTCACTCTTTACCTCGCTCGTACTGAGATGG AGGGAGCTCGGTGCCGGCCGGACTGCCTACATCCATGGCCTCCACCGGCAATATGGATCCGTTGTGAGAGTCGCT CCAAATGAGGTCTCCTTCACCTCTTGGCTTGCCATCAAAGAGATATACTGCTCTGGGGGGAGCGGCTACGACAAA TCAGACTTTTACGACATGTTCAAGATCTTTGGCAGGAGGACCATGTTCACGATGCTCAACAGAGCTGATCACGCC AAGCGGAAGAGGATCATCGCCGATCGCTACGCCAATTTCAATGTCATGCGCGGCCTTGCCCTCGATGGCATTCAG CATCGATCTCGAACCTTTCTGCGTCGCTGCGCCTCGGCCTCTCAGAGCCAAACGTCGAATATATTCACTGCCCTG CATGCCTACGCTTGCGACTGCGTCACACACCATCTGTTCCATCCACATGGGTCAGACTGCTTGGAAAGCCAAGCT GACCAAGACATGATGCACCAGGTGACTGCCGACGATAGCATTCAAAATCGCCTCATAGAGCATCATTATCCCATC CTTCACCGGCTGTTCGCCAGGCTTCTGCGCCTATTCATCAGACCGCGGGAGGTGCCGCTCGTTGACGACTACGTC TGGACAACAATCAAGCACAGCGACGTAGCCCCGTTCACCTTGCTGAGCCGATTCAAAGACAAGGGAGGATTGGTC GACTCCACCGACGTGGCGGCCGAGTGCCTGGACCACATGGTTGCTGGAATCGATACGACGGGCGACTCGCTGTGC TTTCTCATGTGGGAGCTGTCGCAACCACGATCCGTCTCTTACCAGCGCAGGCTGACGGAAGAGCTCCGAAGTAAC TCTGACACCCCCATCGAACAGCTGCCGTTCTTGGACGCGGTCGTCAATGAGGCCCTGAGGTGCTACCCCGCGATT CCCATGTCTCTTCCCCGTGTCGTGCCTCGAGGAGGTCGCTCTGTCGACGGCGTGTGGTTGCCAGCTCAGACGGTT GTGAGCTGCCAGCCGTACTCTGTGCATCGCATCGACGAGCGCGTCTTCCCCGACCCTGACGTCTTCGACCCCGAC CGCTGGCTGAGGTCTGAAGGCGACCAAGAGCGACGGCGGCTGCTCTTTGCCTTTTCCAACGGTGGAAGGGGTTGC ATCGGCAAACATCTTGCCCTGGCGGAGATGAAGACGCTACTGCGCGACGTCTATTCCGCCTTTAGCACGCAGGCT GACTCGTCCATGACGGAGCAGTCGATGGCGATGAGTGACCAGCTCATCTCAACTCAGCCCCTGGGGAGGAGATGC CTGCTGCAGTTTCGCCCGATTGACGAGGCTGGCGTTTGCGACTGA |
| Transcript | >Ophcf2|01861 ATGCTCATCTCATCCCCCTTCTTTGCCCTCTGTGCGCTCTCCGCCCTGGGCTTGCTACTCCTCCTGCGGCTGATT CGCTGCCTCTCATCGCCACTTCGCAGCCTGCCGGGCCCGCCCTCGTCACTCTTTACCTCGCTCGTACTGAGATGG AGGGAGCTCGGTGCCGGCCGGACTGCCTACATCCATGGCCTCCACCGGCAATATGGATCCGTTGTGAGAGTCGCT CCAAATGAGGTCTCCTTCACCTCTTGGCTTGCCATCAAAGAGATATACTGCTCTGGGGGGAGCGGCTACGACAAA TCAGACTTTTACGACATGTTCAAGATCTTTGGCAGGAGGACCATGTTCACGATGCTCAACAGAGCTGATCACGCC AAGCGGAAGAGGATCATCGCCGATCGCTACGCCAATTTCAATGTCATGCGCGGCCTTGCCCTCGATGGCATTCAG CATCGATCTCGAACCTTTCTGCGTCGCTGCGCCTCGGCCTCTCAGAGCCAAACGTCGAATATATTCACTGCCCTG CATGCCTACGCTTGCGACTGCGTCACACACCATCTGTTCCATCCACATGGGTCAGACTGCTTGGAAAGCCAAGCT GACCAAGACATGATGCACCAGGTGACTGCCGACGATAGCATTCAAAATCGCCTCATAGAGCATCATTATCCCATC CTTCACCGGCTGTTCGCCAGGCTTCTGCGCCTATTCATCAGACCGCGGGAGGTGCCGCTCGTTGACGACTACGTC TGGACAACAATCAAGCACAGCGACGTAGCCCCGTTCACCTTGCTGAGCCGATTCAAAGACAAGGGAGGATTGGTC GACTCCACCGACGTGGCGGCCGAGTGCCTGGACCACATGGTTGCTGGAATCGATACGACGGGCGACTCGCTGTGC TTTCTCATGTGGGAGCTGTCGCAACCACGATCCGTCTCTTACCAGCGCAGGCTGACGGAAGAGCTCCGAAGTAAC TCTGACACCCCCATCGAACAGCTGCCGTTCTTGGACGCGGTCGTCAATGAGGCCCTGAGGTGCTACCCCGCGATT CCCATGTCTCTTCCCCGTGTCGTGCCTCGAGGAGGTCGCTCTGTCGACGGCGTGTGGTTGCCAGCTCAGACGGTT GTGAGCTGCCAGCCGTACTCTGTGCATCGCATCGACGAGCGCGTCTTCCCCGACCCTGACGTCTTCGACCCCGAC CGCTGGCTGAGGTCTGAAGGCGACCAAGAGCGACGGCGGCTGCTCTTTGCCTTTTCCAACGGTGGAAGGGGTTGC ATCGGCAAACATCTTGCCCTGGCGGAGATGAAGACGCTACTGCGCGACGTCTATTCCGCCTTTAGCACGCAGGCT GACTCGTCCATGACGGAGCAGTCGATGGCGATGAGTGACCAGCTCATCTCAACTCAGCCCCTGGGGAGGAGATGC CTGCTGCAGTTTCGCCCGATTGACGAGGCTGGCGTTTGCGACTGA |
| Gene | >Ophcf2|01861 ATGCTCATCTCATCCCCCTTCTTTGCCCTCTGTGCGCTCTCCGCCCTGGGCTTGCTACTCCTCCTGCGGCTGATT CGCTGCCTCTCATCGCCACTTCGCAGCCTGCCGGGCCCGCCCTCGTCACTCTTTACCTCGCTCGTACTGAGATGG AGGGAGCTCGGTGCCGGCCGGACTGCCTACATCCATGGCCTCCACCGGCAATATGGATCCGTTGTGAGAGTCGCT CCAAATGAGGTCTCCTTCACCTCTTGGCTTGCCATCAAAGAGATATACTGCTCTGGGGGGAGCGGCTACGACAAA TCAGACTTTTACGACATGTTCAAGATCTTTGGCAGGAGGTCAGGTCGCCCCGCGACCTTTGTTACCTATTCTCTC AGCCGCTCTGACCTCGGATGCACAGGACCATGTTCACGATGCTCAACAGAGCTGATGTGAGCCCCAGCGCCGGTG TCGTGCCATTGCCAACACGCTGACCTCGCGGAAACCACTTACTACGACAATTCCACCAGCACGCCAAGCGGAAGA GGATCATCGCCGATCGCTACGCCAATTTCAATGTCATGCGCGGCCTTGCCCTCGATGGCATTCAGCATCGATCTC GAACCTTTCTGCGTCGCTGCGCCTCGGCCTCTCAGAGCCAAACGTCGAATATATTCGTGAGTTTTCCCTCACAAG GCCAAGGAGCCAAGGGCAGTCGACGCTGACGTGTGAAGAGCAGACTGGTTTGTTTTGCGCCAGTTTCCGTCGTCT CGCATGGCATATGTTTTGACAGCCTTAGCCCTGCATGCCTACGCTTGCGACTGCGTCACACACCATCTGTTCCAT CCACATGGGTCAGACTGCTTGGAAAGCCAAGCTGACCAAGACATGATGCACCAGGTGACTGCCGACGATAGCATT CAAAGTCGGTACAACGCACAAACGCATATCGGCATTGAAAGTCTGACAAGACTACCCGCCAGATCGCCTCATAGA GCATCATTATCCCATCCTTCACCGGCTGTTCGCCAGGCTTCTGCGCCTATTCATCAGACCGCGGGAGGTGCCGCT CGTTGACGACTACGTCTGGACAACAATCAAGCACAGCGACGTAGCCCCGTTCACCTTGCTGAGCCGATTCAAAGA CAAGGGAGGATTGGTCGACTCCACCGACGTGGCGGCCGAGTGCCTGGACCACATGGTTGCTGGAATCGATACGAC GGGCGACTCGCTGTGCTTTCTCATGTGGGAGCTGTCGCAACCACGATCCGTCTCTTACCAGCGCAGGCTGACGGA AGAGCTCCGAAGTAACTCTGACACCCCCATCGAACAGCTGCCGTTCTTGGACGCGGTCGTCAATGAGGCCCTGAG GTGCTACCCCGCGATTCCCATGTCTCTTCCCCGTGTCGTGCCTCGAGGAGGTCGCTCTGTCGACGGCGTGTGGTT GCCAGCTCAGACGGTTGTGAGCTGCCAGCCGTACTCTGTGCATCGCATCGACGAGCGCGTCTTCCCCGACCCTGA CGTCTTCGACCCCGACCGCTGGCTGAGGTCTGAAGGCGACCAAGAGCGACGGCGGCTGCTCTTTGCCTTTTCCAA CGGTGGAAGGGGTTGCATCGGCAAACAGTGAGTCGGGCAACGTGCATGCAGCCGAAGAATGGCTGACGTAGTTGA ACAGTCTTGCCCTGGCGGAGATGAAGACGCTACTGCGCGACGTCTATTCCGCCTTTAGCACGCAGGCTGACTCGT CCATGACGGAGCAGTCGATGGCGATGAGTGACCAGCTCATCTCAACTCAGCCCCTGGGGAGGAGATGCCTGCTGC AGTTTCGCCCGATTGACGAGGCTGGCGTTTGCGACTGA |