© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01856 |
| Gene name | |
| Location | scaffold_02:1927819..1928833 |
| Strand | - |
| Gene length (bp) | 1014 |
| Transcript length (bp) | 894 |
| Coding sequence length (bp) | 894 |
| Protein length (aa) | 298 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01066 | CDP-OH_P_transf | CDP-alcohol phosphatidyltransferase | 4.0E-15 | 40 | 156 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0016780 | phosphotransferase activity, for other substituted phosphate groups | Yes |
| GO:0008654 | phospholipid biosynthetic process | Yes |
| GO:0044238 | primary metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0008152 | metabolic process | No |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0016740 | transferase activity | No |
| GO:0009058 | biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0090407 | organophosphate biosynthetic process | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:0006644 | phospholipid metabolic process | No |
| GO:0006796 | phosphate-containing compound metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0006793 | phosphorus metabolic process | No |
| GO:0019637 | organophosphate metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Peroxisomal targeting signal | 0.1729 | 0.2044 | 0.0255 | 0.046 | 0.4526 | 0.078 | 0.9035 | 0.3012 | 0.596 | 0.0706 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 36 | 58 | 22 |
| 2 | 108 | 130 | 22 |
| 3 | 171 | 193 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 4092 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01856 MSGLSDDADAGDGSVSGNGSARALARAGFETDCENIFLFWPNVIGYFRIVLAIASLYYMPLHPRTCSVLYSISCL LDALDGYAARLFDQSTRFGAVLDMVTDRCTTSCLLVFLSSAFPRWAILFQCLIALDFSSHYMHMYATLVVGGADS SHKNIDKSQSRLLNLYYSNKIVLFVFCVLNELFFIALYLLSFSSPLLSPHLIKGVDDSVVQPGAQVNASLLRQMF ADPFSAGALELARANKMDSNGPWILAGISFPVMAMKQFINVVQLVKASKSLAEVDVKARRARGVSAAKVKKG* |
| Coding | >Ophcf2|01856 ATGTCTGGTCTCTCGGACGATGCGGATGCTGGTGATGGCTCCGTCAGCGGCAACGGCTCGGCTCGGGCTTTGGCT CGGGCTGGGTTTGAGACTGATTGCGAGAACATCTTTCTGTTCTGGCCTAATGTCATCGGCTATTTCCGGATCGTG CTGGCGATTGCGTCGCTTTACTACATGCCGCTTCACCCTCGGACCTGTTCGGTCCTCTACAGCATTTCGTGTCTG CTAGACGCGCTCGATGGTTACGCGGCCAGACTGTTCGACCAGTCGACTCGTTTCGGTGCCGTCCTGGACATGGTG ACGGACCGATGCACTACGTCATGCCTGCTCGTCTTCCTGTCGTCGGCTTTTCCGCGGTGGGCCATCCTATTTCAG TGCCTCATCGCACTCGACTTTTCAAGCCACTATATGCACATGTACGCCACGCTCGTCGTTGGAGGCGCCGACTCG AGCCACAAGAACATCGACAAGAGCCAGAGCCGACTGCTGAATCTGTACTACTCAAATAAGATTGTCCTCTTCGTC TTCTGCGTTCTCAACGAGCTCTTCTTCATCGCCCTCTACCTCCTGTCCTTTTCGTCGCCCCTGCTATCGCCGCAC CTGATCAAGGGCGTTGACGATTCGGTCGTGCAGCCCGGCGCACAGGTCAACGCGTCGCTGCTGAGACAGATGTTC GCCGACCCCTTTAGTGCCGGCGCGCTGGAGCTCGCTCGCGCCAACAAGATGGATTCTAACGGACCATGGATCTTG GCCGGCATCAGCTTCCCTGTCATGGCCATGAAGCAGTTCATTAACGTGGTGCAGCTCGTTAAGGCCAGCAAGTCG CTTGCCGAAGTCGACGTCAAGGCTCGTCGCGCGAGGGGCGTCTCGGCCGCCAAGGTCAAGAAGGGCTGA |
| Transcript | >Ophcf2|01856 ATGTCTGGTCTCTCGGACGATGCGGATGCTGGTGATGGCTCCGTCAGCGGCAACGGCTCGGCTCGGGCTTTGGCT CGGGCTGGGTTTGAGACTGATTGCGAGAACATCTTTCTGTTCTGGCCTAATGTCATCGGCTATTTCCGGATCGTG CTGGCGATTGCGTCGCTTTACTACATGCCGCTTCACCCTCGGACCTGTTCGGTCCTCTACAGCATTTCGTGTCTG CTAGACGCGCTCGATGGTTACGCGGCCAGACTGTTCGACCAGTCGACTCGTTTCGGTGCCGTCCTGGACATGGTG ACGGACCGATGCACTACGTCATGCCTGCTCGTCTTCCTGTCGTCGGCTTTTCCGCGGTGGGCCATCCTATTTCAG TGCCTCATCGCACTCGACTTTTCAAGCCACTATATGCACATGTACGCCACGCTCGTCGTTGGAGGCGCCGACTCG AGCCACAAGAACATCGACAAGAGCCAGAGCCGACTGCTGAATCTGTACTACTCAAATAAGATTGTCCTCTTCGTC TTCTGCGTTCTCAACGAGCTCTTCTTCATCGCCCTCTACCTCCTGTCCTTTTCGTCGCCCCTGCTATCGCCGCAC CTGATCAAGGGCGTTGACGATTCGGTCGTGCAGCCCGGCGCACAGGTCAACGCGTCGCTGCTGAGACAGATGTTC GCCGACCCCTTTAGTGCCGGCGCGCTGGAGCTCGCTCGCGCCAACAAGATGGATTCTAACGGACCATGGATCTTG GCCGGCATCAGCTTCCCTGTCATGGCCATGAAGCAGTTCATTAACGTGGTGCAGCTCGTTAAGGCCAGCAAGTCG CTTGCCGAAGTCGACGTCAAGGCTCGTCGCGCGAGGGGCGTCTCGGCCGCCAAGGTCAAGAAGGGCTGA |
| Gene | >Ophcf2|01856 ATGTCTGGTCTCTCGGACGATGCGGATGCTGGTGATGGCTCCGTCAGCGGCAACGGCTCGGCTCGGGCTTTGGCT CGGGCTGGGTTTGAGACTGATTGCGAGAACATCTTTCTGTTCTGGCCTAATGTCATCGGTAAGTGTTCTCGTTGA CAATCTCCCTGTGGTCGTTCGCGTGCTGATGATGGTGTTTTGGGTTCAGGCTATTTCCGGATCGTGCTGGCGATT GCGTCGCTTTACTACATGCCGCTTCACCCTCGGACCTGTTCGGTCCTCTACAGCATTTCGTGTCTGCTAGACGCG CTCGATGGTTACGCGGCCAGACTGTTCGACCAGTCGACTCGTTTCGGTGCCGTCCTGGACATGGTGACGGACCGA TGCACTACGTCATGCCTGCTCGTCTTCCTGTCGTCGGCTTTTCCGCGGTGGGCCATCCTATTTCAGTGCCTCATC GCACTCGACTTTTCAAGCCACTATATGCACATGTACGCCACGCTCGTCGTTGGAGGCGCCGACTCGAGCCACAAG AACATCGACAAGAGCCAGAGCCGACTGCTGAATCTGTACTACTCAAATAAGGTACGTCGCCGTGTTCTCTTCCTC CGTCGAATGAGCCAGCTGACGTCATTGCAGATTGTCCTCTTCGTCTTCTGCGTTCTCAACGAGCTCTTCTTCATC GCCCTCTACCTCCTGTCCTTTTCGTCGCCCCTGCTATCGCCGCACCTGATCAAGGGCGTTGACGATTCGGTCGTG CAGCCCGGCGCACAGGTCAACGCGTCGCTGCTGAGACAGATGTTCGCCGACCCCTTTAGTGCCGGCGCGCTGGAG CTCGCTCGCGCCAACAAGATGGATTCTAACGGACCATGGATCTTGGCCGGCATCAGCTTCCCTGTCATGGCCATG AAGCAGTTCATTAACGTGGTGCAGCTCGTTAAGGCCAGCAAGTCGCTTGCCGAAGTCGACGTCAAGGCTCGTCGC GCGAGGGGCGTCTCGGCCGCCAAGGTCAAGAAGGGCTGA |