Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|01835
Gene name
Locationscaffold_02:1855655..1857437
Strand-
Gene length (bp)1782
Transcript length (bp)1617
Coding sequence length (bp)1617
Protein length (aa) 539

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07690 MFS_1 Major Facilitator Superfamily 2.3E-19 87 497
PF00083 Sugar_tr Sugar (and other) transporter 2.8E-19 88 531

GO

GO Term Description Terminal node
GO:0022857 transmembrane transporter activity Yes
GO:0055085 transmembrane transport Yes
GO:0016021 integral component of membrane Yes
GO:0005575 cellular_component No
GO:0051179 localization No
GO:0008150 biological_process No
GO:0031224 intrinsic component of membrane No
GO:0006810 transport No
GO:0009987 cellular process No
GO:0003674 molecular_function No
GO:0005215 transporter activity No
GO:0110165 cellular anatomical entity No
GO:0051234 establishment of localization No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 41 0.45

Transmembrane Domains

Domain # Start End Length
1 85 107 22
2 122 142 20
3 149 168 19
4 178 200 22
5 207 229 22
6 253 275 22
7 355 377 22
8 418 440 22
9 447 469 22
10 479 501 22
11 508 530 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 7.20 2.61 11.78
Alive In ants, during behavior modification 7.54 2.87 12.20
Dead In ants, recently dead 9.25 3.78 14.72

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.895067 no
Alive Dead 0.395122 no
Dead Fungus 0.377351 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|01835
MVGVAFDEAAIRGPERDAITTALHRPPTGYPPQKLEAGESIQSLSSGSAEDVLALQDVDPVLNMKMHLVNDAIDE
IGWTPYHLKLFFLSGFGYAVDSMILNFQSNITTMAYLEMGNGGYRNALTIAVYGGMLSGALFWGLFADMIGRKLA
FNLSLFMSAICCILAGVMPSWSSLGLFIGLLGFGSGGNLILDSVVFLEYLPSSKQSILTMLACWWGIGQTLSTCI
AWIYMTDSQSQWNCNRETHCNWGNNAGWRYALFTGGGLVLTLSLLRVTVVRLRETPKYQLSNGKDAELVETFHVL
ATKYGRSCSLTIDKLEACGAIQSTDRRDRFFLTEALAHVGGLFSTRTLAQSTIMIWLSWAVIGLAYALFYAFLPT
YFAASGLDFGRSVSDTYRNLIITELSGVPGPILAGFLCNWRVLGRRYTMFIGALCTAPFFVAYPLAHTSAQNLIM
TSFIAFFINVYYSTLYAYTPEVLPSPHRATGNGIAVACNRVMGIVAAVVVATTNTATGTPFYICGGLLMMSAAFV
ALFPLEPCGRRSS*
Coding >Ophcf2|01835
ATGGTCGGAGTTGCCTTTGACGAGGCTGCCATCCGAGGCCCGGAACGCGATGCCATCACCACGGCACTGCACCGG
CCGCCGACGGGGTACCCGCCTCAAAAACTGGAGGCGGGAGAGTCGATTCAGAGTCTCTCGTCTGGGAGTGCAGAG
GATGTCTTGGCGTTGCAGGACGTTGACCCGGTGCTGAATATGAAGATGCATCTCGTCAACGACGCCATTGATGAG
ATTGGATGGACGCCGTACCATCTGAAGTTATTCTTTCTCAGTGGTTTCGGCTACGCGGTCGACTCCATGATCCTC
AACTTCCAGAGCAACATCACAACAATGGCCTACCTCGAGATGGGCAATGGCGGCTACCGCAACGCGCTCACCATC
GCCGTCTACGGCGGCATGCTCTCTGGCGCTCTCTTCTGGGGCTTATTCGCCGACATGATCGGCCGCAAGCTTGCT
TTTAACCTGTCGCTCTTCATGAGCGCCATCTGCTGCATCCTCGCCGGCGTTATGCCCAGCTGGTCTTCGCTCGGC
CTTTTCATTGGCCTCCTCGGCTTCGGCAGCGGCGGCAACCTCATCCTCGACTCCGTCGTCTTCCTCGAGTATCTG
CCCAGCTCGAAGCAGAGCATCCTGACAATGCTCGCCTGCTGGTGGGGGATCGGCCAGACCCTTTCTACCTGCATC
GCCTGGATCTACATGACAGACAGTCAGTCGCAATGGAACTGTAATCGCGAGACGCATTGCAACTGGGGCAACAAC
GCTGGCTGGCGCTACGCCCTCTTCACCGGCGGCGGCCTCGTGCTCACCCTGTCGCTGCTCCGTGTCACGGTTGTT
CGCCTGCGTGAGACGCCCAAGTATCAGCTCAGCAACGGCAAGGACGCTGAGCTCGTCGAGACGTTTCACGTACTC
GCGACCAAGTACGGCCGCTCTTGCTCGCTGACAATCGACAAGCTCGAAGCCTGCGGCGCAATTCAATCCACCGAT
CGAAGGGATCGCTTCTTTCTCACCGAGGCCCTGGCTCATGTTGGCGGCCTCTTTTCGACCAGAACCTTGGCACAG
TCGACGATAATGATCTGGCTCTCGTGGGCAGTCATCGGCCTGGCCTATGCCCTCTTCTACGCCTTCTTGCCGACG
TACTTTGCGGCCAGCGGCCTGGACTTCGGTCGCTCAGTGAGCGACACTTACCGCAACTTGATCATCACTGAACTG
TCCGGTGTGCCGGGACCTATCCTGGCTGGCTTCCTCTGCAACTGGAGGGTGCTGGGCCGCAGATACACCATGTTC
ATTGGCGCTCTCTGCACTGCTCCCTTCTTCGTGGCCTACCCCTTGGCCCATACGTCTGCGCAGAACCTGATTATG
ACGTCCTTCATCGCCTTCTTCATAAATGTCTATTACAGTACGCTTTATGCCTACACGCCCGAGGTGCTTCCCAGC
CCCCATCGGGCGACGGGTAACGGCATCGCAGTGGCGTGCAATCGCGTCATGGGAATCGTGGCAGCAGTGGTAGTC
GCGACGACCAATACGGCGACTGGGACGCCCTTCTACATCTGCGGCGGGCTGCTCATGATGTCGGCCGCGTTCGTT
GCCTTGTTTCCGTTAGAGCCCTGCGGCCGAAGGAGCTCGTGA
Transcript >Ophcf2|01835
ATGGTCGGAGTTGCCTTTGACGAGGCTGCCATCCGAGGCCCGGAACGCGATGCCATCACCACGGCACTGCACCGG
CCGCCGACGGGGTACCCGCCTCAAAAACTGGAGGCGGGAGAGTCGATTCAGAGTCTCTCGTCTGGGAGTGCAGAG
GATGTCTTGGCGTTGCAGGACGTTGACCCGGTGCTGAATATGAAGATGCATCTCGTCAACGACGCCATTGATGAG
ATTGGATGGACGCCGTACCATCTGAAGTTATTCTTTCTCAGTGGTTTCGGCTACGCGGTCGACTCCATGATCCTC
AACTTCCAGAGCAACATCACAACAATGGCCTACCTCGAGATGGGCAATGGCGGCTACCGCAACGCGCTCACCATC
GCCGTCTACGGCGGCATGCTCTCTGGCGCTCTCTTCTGGGGCTTATTCGCCGACATGATCGGCCGCAAGCTTGCT
TTTAACCTGTCGCTCTTCATGAGCGCCATCTGCTGCATCCTCGCCGGCGTTATGCCCAGCTGGTCTTCGCTCGGC
CTTTTCATTGGCCTCCTCGGCTTCGGCAGCGGCGGCAACCTCATCCTCGACTCCGTCGTCTTCCTCGAGTATCTG
CCCAGCTCGAAGCAGAGCATCCTGACAATGCTCGCCTGCTGGTGGGGGATCGGCCAGACCCTTTCTACCTGCATC
GCCTGGATCTACATGACAGACAGTCAGTCGCAATGGAACTGTAATCGCGAGACGCATTGCAACTGGGGCAACAAC
GCTGGCTGGCGCTACGCCCTCTTCACCGGCGGCGGCCTCGTGCTCACCCTGTCGCTGCTCCGTGTCACGGTTGTT
CGCCTGCGTGAGACGCCCAAGTATCAGCTCAGCAACGGCAAGGACGCTGAGCTCGTCGAGACGTTTCACGTACTC
GCGACCAAGTACGGCCGCTCTTGCTCGCTGACAATCGACAAGCTCGAAGCCTGCGGCGCAATTCAATCCACCGAT
CGAAGGGATCGCTTCTTTCTCACCGAGGCCCTGGCTCATGTTGGCGGCCTCTTTTCGACCAGAACCTTGGCACAG
TCGACGATAATGATCTGGCTCTCGTGGGCAGTCATCGGCCTGGCCTATGCCCTCTTCTACGCCTTCTTGCCGACG
TACTTTGCGGCCAGCGGCCTGGACTTCGGTCGCTCAGTGAGCGACACTTACCGCAACTTGATCATCACTGAACTG
TCCGGTGTGCCGGGACCTATCCTGGCTGGCTTCCTCTGCAACTGGAGGGTGCTGGGCCGCAGATACACCATGTTC
ATTGGCGCTCTCTGCACTGCTCCCTTCTTCGTGGCCTACCCCTTGGCCCATACGTCTGCGCAGAACCTGATTATG
ACGTCCTTCATCGCCTTCTTCATAAATGTCTATTACAGTACGCTTTATGCCTACACGCCCGAGGTGCTTCCCAGC
CCCCATCGGGCGACGGGTAACGGCATCGCAGTGGCGTGCAATCGCGTCATGGGAATCGTGGCAGCAGTGGTAGTC
GCGACGACCAATACGGCGACTGGGACGCCCTTCTACATCTGCGGCGGGCTGCTCATGATGTCGGCCGCGTTCGTT
GCCTTGTTTCCGTTAGAGCCCTGCGGCCGAAGGAGCTCGTGA
Gene >Ophcf2|01835
ATGGTCGGAGTTGCCTTTGACGAGGCTGCCATCCGAGGCCCGGAACGCGATGCCATCACCACGGCACTGCACCGG
CCGCCGACGGGGTACCCGCCTCAAAAACTGGAGGCGGGAGAGTCGATTCAGAGTCTCTCGTCTGGGAGTGCAGAG
GATGTCTTGGCGTTGCAGGACGTTGACCCGGTGCTGAATATGAAGATGCATCTCGTCAACGACGTGAGTCTGAGG
GCCATGTGCTTCTTTGGCTGGTTCTGTGCGCTGAGTCTTCGTCTGGCCAGGCCATTGATGAGATTGGATGGACGC
CGTACCATCTGAAGTTATTCTTTCTCAGTGGTTTCGGGTCAGTCACAGATGCCTCGTTGGATCGATGTGCTCACC
AAATCTCCCAGCTACGCGGTCGACTCCATGATCCTCAACTTCCAGAGCAACATCACAACAATGGCCTACCTCGAG
ATGGGCAATGGCGGCTACCGCAACGCGCTCACCATCGCCGTCTACGGCGGCATGCTCTCTGGCGCTCTCTTCTGG
GGCTTATTCGCCGACATGATCGGCCGCAAGCTTGCTTTTAACCTGTCGCTCTTCATGAGCGCCATCTGCTGCATC
CTCGCCGGCGTTATGCCCAGCTGGTCTTCGCTCGGCCTTTTCATTGGCCTCCTCGGCTTCGGCAGCGGCGGCAAC
CTCATCCTCGACTCCGTCGTCTTCCTCGAGTATCTGCCCAGCTCGAAGCAGAGCATCCTGACAATGCTCGCCTGC
TGGTGGGGGATCGGCCAGACCCTTTCTACCTGCATCGCCTGGATCTACATGACAGACAGTCAGTCGCAATGGAAC
TGTAATCGCGAGACGCATTGCAACTGGGGCAACAACGCTGGCTGGCGCTACGCCCTCTTCACCGGCGGCGGCCTC
GTGCTCACCCTGTCGCTGCTCCGTGTCACGGTTGTTCGCCTGCGTGAGACGCCCAAGTATCAGCTCAGCAACGGC
AAGGACGCTGAGCTCGTCGAGACGTTTCACGTACTCGCGACCAAGTACGGCCGCTCTTGCTCGCTGACAATCGAC
AAGCTCGAAGCCTGCGGCGCAATTCAATCCACCGATCGAAGGGATCGCTTCTTTCTCACCGAGGCCCTGGCTCAT
GTTGGCGGCCTCTTTTCGACCAGAACCTTGGCACAGTCGACGATAATGATCTGGCTCTCGTGGGCAGTCATCGGC
CTGGCCTATGCCCTCTTCTACGCCTTCTTGCCGTGAGTCCGCCCGTCTTGTCACCGTGCTGTTGACCGCCTGACG
TGCAGACTTAGGACGTACTTTGCGGCCAGCGGCCTGGACTTCGGTCGCTCAGTGAGCGACACTTACCGCAACTTG
ATCATCACTGAACTGTCCGGTGTGCCGGGACCTATCCTGGCTGGCTTCCTCTGCAACTGGAGGGTGCTGGGCCGC
AGATACACCATGTTCATTGGCGCTCTCTGCACTGCTCCCTTCTTCGTGGCCTACCCCTTGGCCCATACGTCTGCG
CAGAACCTGATTATGACGTCCTTCATCGCCTTCTTCATAAATGTCTATTACAGTACGCTTTATGCCTACACGCCC
GAGGTGCTTCCCAGCCCCCATCGGGCGACGGGTAACGGCATCGCAGTGGCGTGCAATCGCGTCATGGGAATCGTG
GCAGCAGTGGTAGTCGCGACGACCAATACGGCGACTGGGACGCCCTTCTACATCTGCGGCGGGCTGCTCATGATG
TCGGCCGCGTTCGTTGCCTTGTTTCCGTTAGAGCCCTGCGGCCGAAGGAGCTCGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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