© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01835 |
| Gene name | |
| Location | scaffold_02:1855655..1857437 |
| Strand | - |
| Gene length (bp) | 1782 |
| Transcript length (bp) | 1617 |
| Coding sequence length (bp) | 1617 |
| Protein length (aa) | 539 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 2.3E-19 | 87 | 497 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 2.8E-19 | 88 | 531 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 41 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 85 | 107 | 22 |
| 2 | 122 | 142 | 20 |
| 3 | 149 | 168 | 19 |
| 4 | 178 | 200 | 22 |
| 5 | 207 | 229 | 22 |
| 6 | 253 | 275 | 22 |
| 7 | 355 | 377 | 22 |
| 8 | 418 | 440 | 22 |
| 9 | 447 | 469 | 22 |
| 10 | 479 | 501 | 22 |
| 11 | 508 | 530 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 7.20 | 2.61 | 11.78 |
| Alive | In ants, during behavior modification | 7.54 | 2.87 | 12.20 |
| Dead | In ants, recently dead | 9.25 | 3.78 | 14.72 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.895067 | no |
| Alive | Dead | 0.395122 | no |
| Dead | Fungus | 0.377351 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01835 MVGVAFDEAAIRGPERDAITTALHRPPTGYPPQKLEAGESIQSLSSGSAEDVLALQDVDPVLNMKMHLVNDAIDE IGWTPYHLKLFFLSGFGYAVDSMILNFQSNITTMAYLEMGNGGYRNALTIAVYGGMLSGALFWGLFADMIGRKLA FNLSLFMSAICCILAGVMPSWSSLGLFIGLLGFGSGGNLILDSVVFLEYLPSSKQSILTMLACWWGIGQTLSTCI AWIYMTDSQSQWNCNRETHCNWGNNAGWRYALFTGGGLVLTLSLLRVTVVRLRETPKYQLSNGKDAELVETFHVL ATKYGRSCSLTIDKLEACGAIQSTDRRDRFFLTEALAHVGGLFSTRTLAQSTIMIWLSWAVIGLAYALFYAFLPT YFAASGLDFGRSVSDTYRNLIITELSGVPGPILAGFLCNWRVLGRRYTMFIGALCTAPFFVAYPLAHTSAQNLIM TSFIAFFINVYYSTLYAYTPEVLPSPHRATGNGIAVACNRVMGIVAAVVVATTNTATGTPFYICGGLLMMSAAFV ALFPLEPCGRRSS* |
| Coding | >Ophcf2|01835 ATGGTCGGAGTTGCCTTTGACGAGGCTGCCATCCGAGGCCCGGAACGCGATGCCATCACCACGGCACTGCACCGG CCGCCGACGGGGTACCCGCCTCAAAAACTGGAGGCGGGAGAGTCGATTCAGAGTCTCTCGTCTGGGAGTGCAGAG GATGTCTTGGCGTTGCAGGACGTTGACCCGGTGCTGAATATGAAGATGCATCTCGTCAACGACGCCATTGATGAG ATTGGATGGACGCCGTACCATCTGAAGTTATTCTTTCTCAGTGGTTTCGGCTACGCGGTCGACTCCATGATCCTC AACTTCCAGAGCAACATCACAACAATGGCCTACCTCGAGATGGGCAATGGCGGCTACCGCAACGCGCTCACCATC GCCGTCTACGGCGGCATGCTCTCTGGCGCTCTCTTCTGGGGCTTATTCGCCGACATGATCGGCCGCAAGCTTGCT TTTAACCTGTCGCTCTTCATGAGCGCCATCTGCTGCATCCTCGCCGGCGTTATGCCCAGCTGGTCTTCGCTCGGC CTTTTCATTGGCCTCCTCGGCTTCGGCAGCGGCGGCAACCTCATCCTCGACTCCGTCGTCTTCCTCGAGTATCTG CCCAGCTCGAAGCAGAGCATCCTGACAATGCTCGCCTGCTGGTGGGGGATCGGCCAGACCCTTTCTACCTGCATC GCCTGGATCTACATGACAGACAGTCAGTCGCAATGGAACTGTAATCGCGAGACGCATTGCAACTGGGGCAACAAC GCTGGCTGGCGCTACGCCCTCTTCACCGGCGGCGGCCTCGTGCTCACCCTGTCGCTGCTCCGTGTCACGGTTGTT CGCCTGCGTGAGACGCCCAAGTATCAGCTCAGCAACGGCAAGGACGCTGAGCTCGTCGAGACGTTTCACGTACTC GCGACCAAGTACGGCCGCTCTTGCTCGCTGACAATCGACAAGCTCGAAGCCTGCGGCGCAATTCAATCCACCGAT CGAAGGGATCGCTTCTTTCTCACCGAGGCCCTGGCTCATGTTGGCGGCCTCTTTTCGACCAGAACCTTGGCACAG TCGACGATAATGATCTGGCTCTCGTGGGCAGTCATCGGCCTGGCCTATGCCCTCTTCTACGCCTTCTTGCCGACG TACTTTGCGGCCAGCGGCCTGGACTTCGGTCGCTCAGTGAGCGACACTTACCGCAACTTGATCATCACTGAACTG TCCGGTGTGCCGGGACCTATCCTGGCTGGCTTCCTCTGCAACTGGAGGGTGCTGGGCCGCAGATACACCATGTTC ATTGGCGCTCTCTGCACTGCTCCCTTCTTCGTGGCCTACCCCTTGGCCCATACGTCTGCGCAGAACCTGATTATG ACGTCCTTCATCGCCTTCTTCATAAATGTCTATTACAGTACGCTTTATGCCTACACGCCCGAGGTGCTTCCCAGC CCCCATCGGGCGACGGGTAACGGCATCGCAGTGGCGTGCAATCGCGTCATGGGAATCGTGGCAGCAGTGGTAGTC GCGACGACCAATACGGCGACTGGGACGCCCTTCTACATCTGCGGCGGGCTGCTCATGATGTCGGCCGCGTTCGTT GCCTTGTTTCCGTTAGAGCCCTGCGGCCGAAGGAGCTCGTGA |
| Transcript | >Ophcf2|01835 ATGGTCGGAGTTGCCTTTGACGAGGCTGCCATCCGAGGCCCGGAACGCGATGCCATCACCACGGCACTGCACCGG CCGCCGACGGGGTACCCGCCTCAAAAACTGGAGGCGGGAGAGTCGATTCAGAGTCTCTCGTCTGGGAGTGCAGAG GATGTCTTGGCGTTGCAGGACGTTGACCCGGTGCTGAATATGAAGATGCATCTCGTCAACGACGCCATTGATGAG ATTGGATGGACGCCGTACCATCTGAAGTTATTCTTTCTCAGTGGTTTCGGCTACGCGGTCGACTCCATGATCCTC AACTTCCAGAGCAACATCACAACAATGGCCTACCTCGAGATGGGCAATGGCGGCTACCGCAACGCGCTCACCATC GCCGTCTACGGCGGCATGCTCTCTGGCGCTCTCTTCTGGGGCTTATTCGCCGACATGATCGGCCGCAAGCTTGCT TTTAACCTGTCGCTCTTCATGAGCGCCATCTGCTGCATCCTCGCCGGCGTTATGCCCAGCTGGTCTTCGCTCGGC CTTTTCATTGGCCTCCTCGGCTTCGGCAGCGGCGGCAACCTCATCCTCGACTCCGTCGTCTTCCTCGAGTATCTG CCCAGCTCGAAGCAGAGCATCCTGACAATGCTCGCCTGCTGGTGGGGGATCGGCCAGACCCTTTCTACCTGCATC GCCTGGATCTACATGACAGACAGTCAGTCGCAATGGAACTGTAATCGCGAGACGCATTGCAACTGGGGCAACAAC GCTGGCTGGCGCTACGCCCTCTTCACCGGCGGCGGCCTCGTGCTCACCCTGTCGCTGCTCCGTGTCACGGTTGTT CGCCTGCGTGAGACGCCCAAGTATCAGCTCAGCAACGGCAAGGACGCTGAGCTCGTCGAGACGTTTCACGTACTC GCGACCAAGTACGGCCGCTCTTGCTCGCTGACAATCGACAAGCTCGAAGCCTGCGGCGCAATTCAATCCACCGAT CGAAGGGATCGCTTCTTTCTCACCGAGGCCCTGGCTCATGTTGGCGGCCTCTTTTCGACCAGAACCTTGGCACAG TCGACGATAATGATCTGGCTCTCGTGGGCAGTCATCGGCCTGGCCTATGCCCTCTTCTACGCCTTCTTGCCGACG TACTTTGCGGCCAGCGGCCTGGACTTCGGTCGCTCAGTGAGCGACACTTACCGCAACTTGATCATCACTGAACTG TCCGGTGTGCCGGGACCTATCCTGGCTGGCTTCCTCTGCAACTGGAGGGTGCTGGGCCGCAGATACACCATGTTC ATTGGCGCTCTCTGCACTGCTCCCTTCTTCGTGGCCTACCCCTTGGCCCATACGTCTGCGCAGAACCTGATTATG ACGTCCTTCATCGCCTTCTTCATAAATGTCTATTACAGTACGCTTTATGCCTACACGCCCGAGGTGCTTCCCAGC CCCCATCGGGCGACGGGTAACGGCATCGCAGTGGCGTGCAATCGCGTCATGGGAATCGTGGCAGCAGTGGTAGTC GCGACGACCAATACGGCGACTGGGACGCCCTTCTACATCTGCGGCGGGCTGCTCATGATGTCGGCCGCGTTCGTT GCCTTGTTTCCGTTAGAGCCCTGCGGCCGAAGGAGCTCGTGA |
| Gene | >Ophcf2|01835 ATGGTCGGAGTTGCCTTTGACGAGGCTGCCATCCGAGGCCCGGAACGCGATGCCATCACCACGGCACTGCACCGG CCGCCGACGGGGTACCCGCCTCAAAAACTGGAGGCGGGAGAGTCGATTCAGAGTCTCTCGTCTGGGAGTGCAGAG GATGTCTTGGCGTTGCAGGACGTTGACCCGGTGCTGAATATGAAGATGCATCTCGTCAACGACGTGAGTCTGAGG GCCATGTGCTTCTTTGGCTGGTTCTGTGCGCTGAGTCTTCGTCTGGCCAGGCCATTGATGAGATTGGATGGACGC CGTACCATCTGAAGTTATTCTTTCTCAGTGGTTTCGGGTCAGTCACAGATGCCTCGTTGGATCGATGTGCTCACC AAATCTCCCAGCTACGCGGTCGACTCCATGATCCTCAACTTCCAGAGCAACATCACAACAATGGCCTACCTCGAG ATGGGCAATGGCGGCTACCGCAACGCGCTCACCATCGCCGTCTACGGCGGCATGCTCTCTGGCGCTCTCTTCTGG GGCTTATTCGCCGACATGATCGGCCGCAAGCTTGCTTTTAACCTGTCGCTCTTCATGAGCGCCATCTGCTGCATC CTCGCCGGCGTTATGCCCAGCTGGTCTTCGCTCGGCCTTTTCATTGGCCTCCTCGGCTTCGGCAGCGGCGGCAAC CTCATCCTCGACTCCGTCGTCTTCCTCGAGTATCTGCCCAGCTCGAAGCAGAGCATCCTGACAATGCTCGCCTGC TGGTGGGGGATCGGCCAGACCCTTTCTACCTGCATCGCCTGGATCTACATGACAGACAGTCAGTCGCAATGGAAC TGTAATCGCGAGACGCATTGCAACTGGGGCAACAACGCTGGCTGGCGCTACGCCCTCTTCACCGGCGGCGGCCTC GTGCTCACCCTGTCGCTGCTCCGTGTCACGGTTGTTCGCCTGCGTGAGACGCCCAAGTATCAGCTCAGCAACGGC AAGGACGCTGAGCTCGTCGAGACGTTTCACGTACTCGCGACCAAGTACGGCCGCTCTTGCTCGCTGACAATCGAC AAGCTCGAAGCCTGCGGCGCAATTCAATCCACCGATCGAAGGGATCGCTTCTTTCTCACCGAGGCCCTGGCTCAT GTTGGCGGCCTCTTTTCGACCAGAACCTTGGCACAGTCGACGATAATGATCTGGCTCTCGTGGGCAGTCATCGGC CTGGCCTATGCCCTCTTCTACGCCTTCTTGCCGTGAGTCCGCCCGTCTTGTCACCGTGCTGTTGACCGCCTGACG TGCAGACTTAGGACGTACTTTGCGGCCAGCGGCCTGGACTTCGGTCGCTCAGTGAGCGACACTTACCGCAACTTG ATCATCACTGAACTGTCCGGTGTGCCGGGACCTATCCTGGCTGGCTTCCTCTGCAACTGGAGGGTGCTGGGCCGC AGATACACCATGTTCATTGGCGCTCTCTGCACTGCTCCCTTCTTCGTGGCCTACCCCTTGGCCCATACGTCTGCG CAGAACCTGATTATGACGTCCTTCATCGCCTTCTTCATAAATGTCTATTACAGTACGCTTTATGCCTACACGCCC GAGGTGCTTCCCAGCCCCCATCGGGCGACGGGTAACGGCATCGCAGTGGCGTGCAATCGCGTCATGGGAATCGTG GCAGCAGTGGTAGTCGCGACGACCAATACGGCGACTGGGACGCCCTTCTACATCTGCGGCGGGCTGCTCATGATG TCGGCCGCGTTCGTTGCCTTGTTTCCGTTAGAGCCCTGCGGCCGAAGGAGCTCGTGA |