© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01834 |
| Gene name | |
| Location | scaffold_02:1850674..1852589 |
| Strand | - |
| Gene length (bp) | 1915 |
| Transcript length (bp) | 1722 |
| Coding sequence length (bp) | 1722 |
| Protein length (aa) | 574 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00324 | AA_permease | Amino acid permease | 3.8E-146 | 69 | 532 |
| PF13520 | AA_permease_2 | Amino acid permease | 1.6E-37 | 68 | 510 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 70 | 92 | 22 |
| 2 | 107 | 129 | 22 |
| 3 | 150 | 172 | 22 |
| 4 | 176 | 198 | 22 |
| 5 | 205 | 227 | 22 |
| 6 | 261 | 283 | 22 |
| 7 | 296 | 315 | 19 |
| 8 | 351 | 373 | 22 |
| 9 | 394 | 416 | 22 |
| 10 | 426 | 448 | 22 |
| 11 | 468 | 490 | 22 |
| 12 | 510 | 527 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01834 MSSKEEPYGEKGVGLTAESASHVVSKEGPAPIYRDPNFFTRSGLNLESFKMSQYGRGITELERPLKTRHLHMIAI GGSIGAGFFVGSGQAFSKGGPGSVLIDFLIIGIMMFNVVYALGELAVLYPVSGGFYTYSARFIDPAWGFAMGWNY VFQWAVVLPLELTVCGITIQYWNAEISVAVWISVFLGAIIVVNIFGALGYAEEEFWASCFKLAATVIFMIIALVL VCGGGPKSGRYGEFWGDRYWHNPGAFKNGFKGFCSVFVTAAFAFSGTELVGLAAAESSNPVKSLPGAIKQIFWRI TLFYILGLTFVGLLIDSNDPALLSDTPFADVKASPFVLVGKYANLRGFDHFMNLVILVSVLSIGVSGVYGGSRTL TALAQQGYAPKIFTYIDKSGRPLPSVAFLIAFGLLAFINLSASGPTVFDWLQALSGLAALFTWGSVCLAHIRFRK AWAFHGHTLDEIPFRAAFGVAGSWVGLVLCILVLIAQFYTAIAAPIGKSGLNTAEGFFKSYLAVPVVIVFWIGGY LWKRTGWLRTHQIDVDTGRRELDWDEIRAYRERVATWPAWRRLLHTVM* |
| Coding | >Ophcf2|01834 ATGTCTTCCAAAGAGGAGCCCTACGGCGAAAAGGGCGTCGGCCTCACTGCCGAGAGCGCCAGCCATGTCGTCTCC AAGGAAGGGCCTGCTCCGATCTACCGGGATCCCAACTTCTTCACCCGGTCAGGCCTCAACCTGGAATCGTTCAAA ATGTCTCAGTATGGTCGTGGCATCACCGAGCTTGAGCGGCCCCTCAAGACGCGACACCTGCATATGATAGCCATT GGCGGCTCCATTGGCGCCGGCTTCTTCGTCGGTTCTGGTCAGGCATTCAGCAAAGGCGGGCCGGGTAGCGTTCTT ATCGATTTTCTCATCATCGGCATCATGATGTTCAACGTCGTCTACGCCCTGGGTGAGCTCGCAGTTCTATATCCC GTCTCTGGTGGCTTCTATACGTACTCGGCACGCTTTATCGACCCCGCCTGGGGTTTTGCTATGGGATGGAATTAT GTCTTTCAATGGGCCGTCGTTCTCCCTCTCGAACTCACCGTCTGTGGCATCACGATTCAGTACTGGAACGCCGAA ATTTCCGTCGCCGTCTGGATATCCGTCTTCCTCGGCGCCATCATCGTTGTCAACATCTTTGGAGCCCTTGGATAT GCCGAAGAAGAATTTTGGGCATCGTGCTTCAAGTTGGCTGCCACCGTCATCTTTATGATTATCGCTCTCGTTCTC GTCTGTGGTGGTGGCCCAAAGAGCGGTCGCTACGGCGAGTTCTGGGGAGACCGTTACTGGCACAATCCTGGCGCC TTCAAAAACGGCTTCAAAGGCTTCTGCTCCGTCTTTGTCACTGCCGCTTTTGCCTTTTCCGGTACGGAACTGGTT GGACTCGCTGCTGCCGAGTCTAGCAATCCCGTCAAGTCTCTCCCGGGTGCCATCAAGCAGATTTTCTGGCGAATC ACCCTCTTCTACATTCTTGGCCTCACTTTTGTCGGCTTGCTTATCGACTCGAATGACCCGGCCCTACTCTCCGAC ACCCCTTTCGCCGATGTCAAGGCCTCGCCCTTTGTTCTCGTCGGCAAGTATGCTAATCTCAGGGGGTTCGATCAC TTCATGAATCTCGTCATCCTCGTCTCTGTCTTATCAATCGGTGTTTCTGGCGTCTACGGTGGCTCGCGCACCCTG ACTGCCCTAGCCCAGCAGGGTTACGCCCCAAAGATCTTCACCTACATTGACAAGTCGGGGCGGCCCCTGCCGTCC GTCGCATTCCTCATCGCCTTTGGCTTGTTGGCATTTATCAATCTGTCTGCCTCTGGCCCTACCGTTTTCGACTGG CTGCAGGCGCTGTCGGGTCTTGCTGCCCTATTTACGTGGGGCTCCGTCTGTCTCGCCCATATCCGATTCCGCAAG GCGTGGGCGTTTCACGGTCACACGCTTGATGAGATCCCTTTCAGGGCCGCTTTCGGTGTTGCTGGCTCATGGGTC GGTCTGGTTCTCTGCATTCTCGTGTTGATAGCTCAGTTCTACACTGCTATCGCGGCACCCATCGGCAAGTCTGGT CTCAATACCGCCGAGGGATTCTTCAAATCGTATCTCGCCGTGCCGGTTGTCATCGTTTTTTGGATCGGTGGTTAT CTGTGGAAGCGCACCGGCTGGCTCCGGACGCATCAGATTGATGTCGACACGGGACGCCGTGAGCTCGACTGGGAT GAGATCCGCGCCTACCGCGAGAGGGTGGCCACATGGCCAGCATGGAGACGCCTTTTGCATACTGTCATGTGA |
| Transcript | >Ophcf2|01834 ATGTCTTCCAAAGAGGAGCCCTACGGCGAAAAGGGCGTCGGCCTCACTGCCGAGAGCGCCAGCCATGTCGTCTCC AAGGAAGGGCCTGCTCCGATCTACCGGGATCCCAACTTCTTCACCCGGTCAGGCCTCAACCTGGAATCGTTCAAA ATGTCTCAGTATGGTCGTGGCATCACCGAGCTTGAGCGGCCCCTCAAGACGCGACACCTGCATATGATAGCCATT GGCGGCTCCATTGGCGCCGGCTTCTTCGTCGGTTCTGGTCAGGCATTCAGCAAAGGCGGGCCGGGTAGCGTTCTT ATCGATTTTCTCATCATCGGCATCATGATGTTCAACGTCGTCTACGCCCTGGGTGAGCTCGCAGTTCTATATCCC GTCTCTGGTGGCTTCTATACGTACTCGGCACGCTTTATCGACCCCGCCTGGGGTTTTGCTATGGGATGGAATTAT GTCTTTCAATGGGCCGTCGTTCTCCCTCTCGAACTCACCGTCTGTGGCATCACGATTCAGTACTGGAACGCCGAA ATTTCCGTCGCCGTCTGGATATCCGTCTTCCTCGGCGCCATCATCGTTGTCAACATCTTTGGAGCCCTTGGATAT GCCGAAGAAGAATTTTGGGCATCGTGCTTCAAGTTGGCTGCCACCGTCATCTTTATGATTATCGCTCTCGTTCTC GTCTGTGGTGGTGGCCCAAAGAGCGGTCGCTACGGCGAGTTCTGGGGAGACCGTTACTGGCACAATCCTGGCGCC TTCAAAAACGGCTTCAAAGGCTTCTGCTCCGTCTTTGTCACTGCCGCTTTTGCCTTTTCCGGTACGGAACTGGTT GGACTCGCTGCTGCCGAGTCTAGCAATCCCGTCAAGTCTCTCCCGGGTGCCATCAAGCAGATTTTCTGGCGAATC ACCCTCTTCTACATTCTTGGCCTCACTTTTGTCGGCTTGCTTATCGACTCGAATGACCCGGCCCTACTCTCCGAC ACCCCTTTCGCCGATGTCAAGGCCTCGCCCTTTGTTCTCGTCGGCAAGTATGCTAATCTCAGGGGGTTCGATCAC TTCATGAATCTCGTCATCCTCGTCTCTGTCTTATCAATCGGTGTTTCTGGCGTCTACGGTGGCTCGCGCACCCTG ACTGCCCTAGCCCAGCAGGGTTACGCCCCAAAGATCTTCACCTACATTGACAAGTCGGGGCGGCCCCTGCCGTCC GTCGCATTCCTCATCGCCTTTGGCTTGTTGGCATTTATCAATCTGTCTGCCTCTGGCCCTACCGTTTTCGACTGG CTGCAGGCGCTGTCGGGTCTTGCTGCCCTATTTACGTGGGGCTCCGTCTGTCTCGCCCATATCCGATTCCGCAAG GCGTGGGCGTTTCACGGTCACACGCTTGATGAGATCCCTTTCAGGGCCGCTTTCGGTGTTGCTGGCTCATGGGTC GGTCTGGTTCTCTGCATTCTCGTGTTGATAGCTCAGTTCTACACTGCTATCGCGGCACCCATCGGCAAGTCTGGT CTCAATACCGCCGAGGGATTCTTCAAATCGTATCTCGCCGTGCCGGTTGTCATCGTTTTTTGGATCGGTGGTTAT CTGTGGAAGCGCACCGGCTGGCTCCGGACGCATCAGATTGATGTCGACACGGGACGCCGTGAGCTCGACTGGGAT GAGATCCGCGCCTACCGCGAGAGGGTGGCCACATGGCCAGCATGGAGACGCCTTTTGCATACTGTCATGTGA |
| Gene | >Ophcf2|01834 ATGTCTTCCAAAGAGGAGCCCTACGGCGAAAAGGGCGTCGGCCTCACTGCCGAGAGCGCCAGCCATGTCGTCTCC AAGGAAGGGCCTGCTCCGATCTACCGGGATCCCAACTTCTTCACCCGGTCAGGCCTCAACCTGGAATCGTTCAAA ATGTCTCAGTATGGTCGTGGCATCACCGAGCTTGAGCGGCCCCTCAAGACGCGACACCTGCATATGATAGCCATT GGCGGCTCCATTGGCGCCGGCTTCTTCGTCGGTTCTGGTCAGGCATTCAGCAAAGGCGTGCGTCTCATGCACACT GTTGCCTAATGGCGGTGACGCTTCGCTTACACTGTGCAGGGGCCGGGTAGCGTTCTTATCGATTTTCTCATCATC GGCATCATGATGTTCAACGTCGGTCAGTGACACCACTACTGTTGTGTTAGCCGCGCCCCCCTGCCCCCCCCCAAT GCTGACGTCTTGCTTCTCCGTTTAGTCTACGCCCTGGGTGAGCTCGCAGTTCTATATCCCGTCTCTGGTGGCTTC TATACGTACTCGGCACGCTTTATCGACCCCGCCTGGGGTTTTGCTATGGGATGGAATTATGTCTTTCAATGGGCC GTCGTTCTCCCTCTCGAACTCACCGTCTGTGGCATCACGATTCAGTACTGGAACGCCGAAATTTCCGTCGCCGTC TGGATATCCGTCTTCCTCGGCGCCATCATCGTTGTCAACATCTTTGGAGCCCTTGGATATGCCGAAGAAGAATTT TGGGCATCGTGCTTCAAGTTGGCTGCCACCGTCATCTTTATGATTATCGCTCTCGTTCTCGTCTGTGGTGGTGGC CCAAAGAGCGGTCGCTACGGCGAGTTCTGGGGAGACCGTTACTGGCACAATCCTGGCGCCTTCAAAAACGGCTTC AAAGGCTTCTGCTCCGTCTTTGTCACTGCCGCTTTTGCCTTTTCCGGTACGGAACTGGTTGGACTCGCTGCTGCC GAGTCTAGCAATCCCGTCAAGTCTCTCCCGGGTGCCATCAAGCAGATTTTCTGGCGAATCACCCTCTTCTACATT CTTGGCCTCACTTTTGTCGGCTTGCTTATCGACTCGAATGACCCGGCCCTACTCTCCGACACCCCTTTCGCCGAT GTCAAGGCCTCGCCCTTTGTTCTCGTCGGCAAGTATGCTAATCTCAGGGGGTTCGATCACTTCATGAATCTCGTC ATCCTCGTCTCTGTCTTATCAATCGGTGTTTCTGGCGTCTACGGTGGCTCGCGCACCCTGACTGCCCTAGCCCAG CAGGGTTACGCCCCAAAGATCTTCACCTACATTGACAAGTCGGGGCGGCCCCTGCCGTCCGTCGCATTCCTCATC GCCTTTGGCTTGTTGGCATTTATCAATCTGTCTGCCTCTGGCCCTACCGTTTTCGACTGGCTGCAGGCGCTGTCG GGTCTTGCTGCCCTATTTACGTGGGGCTCCGTCTGTCTCGCCCATATCCGATTCCGCAAGGCGTGGGCGTTTCAC GGTCACACGCTTGATGAGATCCCTTTCAGGGCCGCTTTCGGTGTTGCTGGCTCATGGGTCGGTCTGGTTCTCTGC ATTCTCGTGTTGATAGCTCAGGTTGGTGACGTGGCCCTTCCAACTGTTATGAGCGCTTGCTGATCGTTTTTTTTC CCAGTTCTACACTGCTATCGCGGCACCCATCGGCAAGTCTGGTCTCAATACCGCCGAGGGATTCTTCAAATCGTA TCTCGCCGTGCCGGTTGTCATCGTTTTTTGGATCGGTGGTTATCTGTGGAAGCGCACCGGCTGGCTCCGGACGCA TCAGATTGATGTCGACACGGGACGCCGTGAGCTCGACTGGGATGAGATCCGCGCCTACCGCGAGAGGGTGGCCAC ATGGCCAGCATGGAGACGCCTTTTGCATACTGTCATGTGA |