Protein ID | Ophcf2|01800 |
Gene name | |
Location | scaffold_02:710453..713025 |
Strand | + |
Gene length (bp) | 2572 |
Transcript length (bp) | 2460 |
Coding sequence length (bp) | 2460 |
Protein length (aa) | 820 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF13181 | TPR_8 | Tetratricopeptide repeat | 7.6E-03 | 404 | 432 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005515 | protein binding | Yes |
GO:0005488 | binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 61 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|01800 MAARSLESQELQAISSDDAAYEQDILRDPASVKPWLAYIEFKSRHGSVSQLNVVMARACAQLPRSYKLWRMFLAF RAKHVARINPAAFPAEYRKVNLLFEKALVLLNKMPQIWSLYLQFLLQQPVITVARRVFDRALRALPITQHKRIWV IYLKFASAASGETLLKVWRRYLQLHPEDTEDFIELLLEAGVYAEAAQRYMDLLNNVRFSSKQGKGHYDLWSEMID VLVQHAPDMTSQQETPIDVEKIIRSGLGRFTDQSGKFWSGLATYWLRKGCFDRARNVFEEGITSVLTIRDFSLIF DAYVEFEESVIATLIDVASKRAERNAFDGDADFDLDIRMMRFEHLMDRRPFLINDVLLRQNPNNVSEWEKRVALW GDNKTEIVLTYTKAIAAINPKRAAGSFHKIWVNYARFYERAGDFQNARIIMEKAVKVPFKSVTELAEVWIEWAQM ELRNENFDSAVRVMAKAVQAPKRSQVDYFDDSLSPQQRLHKSWKLWSFYVDLVESVSSLEEVKKVYERVFELRIA TPQTVVNYANLLEEHQYFEESFKVYERGLDLFTYPVAFELWNLYLTKAVDRKIGIERLRDLFEQAAEDCPPKFAK TIFLMYGNLEEERGLARHAMRIYERATRAVADEDRADMFNFYITKSASNFGLPSTRPIYERAISALPDAEAKEMC LKFADMEKRLGEIDRARAIYGHASQFCDPRTNVEFWTKWEQFEVKHGNEDTFKEMLRIKRGVQAQYNTDVNFIAS QALARSKQQVGMPTDDSANDRGWHAERQAVAPQGFVVPGGDAGVTDVPRVEDNQAFNPDAIEVDAVADE* |
Coding | >Ophcf2|01800 ATGGCTGCCCGGTCCCTGGAATCGCAAGAACTACAGGCTATTTCCAGCGACGATGCCGCTTATGAGCAGGACATC CTACGCGACCCCGCAAGCGTCAAGCCATGGCTGGCTTACATCGAATTCAAGTCCCGCCATGGGAGTGTTTCTCAG CTGAACGTCGTGATGGCTCGCGCGTGTGCCCAATTGCCTCGTTCCTACAAACTGTGGAGGATGTTCCTCGCGTTC AGAGCGAAGCATGTGGCCAGAATTAATCCTGCTGCTTTTCCAGCCGAGTATCGGAAGGTCAACCTGCTTTTCGAA AAGGCACTGGTTCTCCTAAACAAGATGCCACAAATCTGGAGCTTGTATCTACAATTTCTTCTGCAGCAACCTGTC ATTACCGTGGCTCGACGAGTCTTCGATCGAGCTCTGAGAGCTCTCCCGATCACACAACACAAGCGCATCTGGGTC ATCTACTTGAAGTTCGCAAGCGCTGCTTCCGGTGAAACATTGTTGAAAGTCTGGAGACGGTACTTGCAATTGCAC CCTGAAGATACCGAGGACTTCATCGAGCTTCTTCTCGAAGCCGGTGTCTATGCAGAAGCAGCCCAGCGTTACATG GATCTGCTGAACAACGTTCGCTTTTCGAGCAAGCAAGGCAAGGGTCACTATGATCTCTGGAGCGAGATGATAGAT GTCCTTGTCCAGCATGCGCCAGATATGACTTCCCAACAAGAGACACCGATAGACGTGGAAAAGATCATCAGAAGC GGATTGGGGCGCTTCACCGACCAGAGCGGCAAGTTTTGGTCAGGATTGGCCACCTACTGGCTACGAAAAGGCTGC TTCGATCGGGCCCGCAACGTATTCGAAGAGGGAATTACAAGCGTCCTCACCATTCGAGACTTTTCCTTGATCTTT GATGCCTACGTCGAGTTCGAGGAGTCTGTAATAGCCACTCTAATCGACGTTGCCTCGAAGCGAGCTGAGCGGAAC GCCTTCGACGGTGATGCTGATTTCGACTTAGACATCAGGATGATGCGGTTCGAGCATTTGATGGACCGCCGGCCC TTCCTCATCAATGATGTCCTCCTGCGGCAGAACCCGAACAACGTATCCGAGTGGGAGAAGAGAGTCGCCCTTTGG GGGGACAACAAGACAGAGATTGTACTGACCTATACCAAGGCAATTGCCGCCATTAATCCTAAGCGAGCAGCAGGG TCGTTTCACAAAATTTGGGTCAACTATGCGCGCTTCTACGAGCGAGCGGGCGATTTTCAGAATGCTCGAATCATC ATGGAGAAAGCTGTCAAAGTCCCGTTTAAGTCCGTCACGGAGCTTGCGGAAGTGTGGATTGAATGGGCGCAAATG GAGCTTCGCAACGAGAATTTCGACAGCGCTGTTCGCGTCATGGCTAAAGCCGTTCAAGCTCCCAAACGCTCGCAA GTTGATTATTTTGACGATAGCCTATCCCCCCAACAGCGGCTACATAAAAGCTGGAAGCTCTGGAGTTTCTACGTC GACCTCGTGGAGAGCGTGTCATCCTTGGAAGAGGTCAAAAAGGTCTACGAACGAGTCTTCGAGCTCCGCATTGCG ACACCTCAGACGGTCGTGAACTACGCAAATCTCTTGGAAGAGCATCAATACTTTGAAGAGTCCTTCAAGGTCTAC GAGCGCGGCCTGGACCTCTTCACATATCCGGTGGCGTTCGAGCTGTGGAACTTATATCTCACCAAGGCAGTCGAC AGGAAAATTGGCATCGAGAGGCTACGGGATTTGTTCGAGCAAGCGGCAGAGGATTGTCCGCCAAAGTTTGCCAAG ACCATATTTTTAATGTACGGCAATCTTGAGGAAGAACGCGGCCTCGCTAGGCACGCGATGCGCATATACGAAAGG GCAACCCGCGCAGTCGCCGACGAAGATCGGGCGGACATGTTCAACTTCTACATTACGAAGTCAGCGTCAAACTTT GGTCTCCCGTCGACGAGACCCATCTACGAAAGAGCCATATCTGCACTGCCCGATGCCGAAGCCAAAGAGATGTGC CTCAAGTTTGCAGACATGGAGAAACGATTGGGCGAGATCGATCGCGCACGAGCAATTTACGGTCATGCCTCGCAA TTCTGCGATCCAAGGACCAACGTCGAATTCTGGACAAAATGGGAGCAGTTTGAAGTGAAGCATGGAAACGAGGAC ACGTTCAAAGAGATGCTCCGGATCAAGCGAGGTGTTCAGGCACAGTATAATACTGATGTCAACTTCATCGCGTCT CAGGCCCTTGCTCGCAGTAAGCAGCAAGTTGGCATGCCGACCGATGACTCTGCCAACGACAGAGGCTGGCATGCG GAACGTCAGGCGGTGGCACCACAAGGCTTTGTGGTGCCTGGTGGTGACGCTGGTGTCACGGACGTGCCCAGGGTC GAGGACAATCAGGCCTTCAACCCAGACGCCATAGAAGTTGATGCAGTTGCTGATGAATGA |
Transcript | >Ophcf2|01800 ATGGCTGCCCGGTCCCTGGAATCGCAAGAACTACAGGCTATTTCCAGCGACGATGCCGCTTATGAGCAGGACATC CTACGCGACCCCGCAAGCGTCAAGCCATGGCTGGCTTACATCGAATTCAAGTCCCGCCATGGGAGTGTTTCTCAG CTGAACGTCGTGATGGCTCGCGCGTGTGCCCAATTGCCTCGTTCCTACAAACTGTGGAGGATGTTCCTCGCGTTC AGAGCGAAGCATGTGGCCAGAATTAATCCTGCTGCTTTTCCAGCCGAGTATCGGAAGGTCAACCTGCTTTTCGAA AAGGCACTGGTTCTCCTAAACAAGATGCCACAAATCTGGAGCTTGTATCTACAATTTCTTCTGCAGCAACCTGTC ATTACCGTGGCTCGACGAGTCTTCGATCGAGCTCTGAGAGCTCTCCCGATCACACAACACAAGCGCATCTGGGTC ATCTACTTGAAGTTCGCAAGCGCTGCTTCCGGTGAAACATTGTTGAAAGTCTGGAGACGGTACTTGCAATTGCAC CCTGAAGATACCGAGGACTTCATCGAGCTTCTTCTCGAAGCCGGTGTCTATGCAGAAGCAGCCCAGCGTTACATG GATCTGCTGAACAACGTTCGCTTTTCGAGCAAGCAAGGCAAGGGTCACTATGATCTCTGGAGCGAGATGATAGAT GTCCTTGTCCAGCATGCGCCAGATATGACTTCCCAACAAGAGACACCGATAGACGTGGAAAAGATCATCAGAAGC GGATTGGGGCGCTTCACCGACCAGAGCGGCAAGTTTTGGTCAGGATTGGCCACCTACTGGCTACGAAAAGGCTGC TTCGATCGGGCCCGCAACGTATTCGAAGAGGGAATTACAAGCGTCCTCACCATTCGAGACTTTTCCTTGATCTTT GATGCCTACGTCGAGTTCGAGGAGTCTGTAATAGCCACTCTAATCGACGTTGCCTCGAAGCGAGCTGAGCGGAAC GCCTTCGACGGTGATGCTGATTTCGACTTAGACATCAGGATGATGCGGTTCGAGCATTTGATGGACCGCCGGCCC TTCCTCATCAATGATGTCCTCCTGCGGCAGAACCCGAACAACGTATCCGAGTGGGAGAAGAGAGTCGCCCTTTGG GGGGACAACAAGACAGAGATTGTACTGACCTATACCAAGGCAATTGCCGCCATTAATCCTAAGCGAGCAGCAGGG TCGTTTCACAAAATTTGGGTCAACTATGCGCGCTTCTACGAGCGAGCGGGCGATTTTCAGAATGCTCGAATCATC ATGGAGAAAGCTGTCAAAGTCCCGTTTAAGTCCGTCACGGAGCTTGCGGAAGTGTGGATTGAATGGGCGCAAATG GAGCTTCGCAACGAGAATTTCGACAGCGCTGTTCGCGTCATGGCTAAAGCCGTTCAAGCTCCCAAACGCTCGCAA GTTGATTATTTTGACGATAGCCTATCCCCCCAACAGCGGCTACATAAAAGCTGGAAGCTCTGGAGTTTCTACGTC GACCTCGTGGAGAGCGTGTCATCCTTGGAAGAGGTCAAAAAGGTCTACGAACGAGTCTTCGAGCTCCGCATTGCG ACACCTCAGACGGTCGTGAACTACGCAAATCTCTTGGAAGAGCATCAATACTTTGAAGAGTCCTTCAAGGTCTAC GAGCGCGGCCTGGACCTCTTCACATATCCGGTGGCGTTCGAGCTGTGGAACTTATATCTCACCAAGGCAGTCGAC AGGAAAATTGGCATCGAGAGGCTACGGGATTTGTTCGAGCAAGCGGCAGAGGATTGTCCGCCAAAGTTTGCCAAG ACCATATTTTTAATGTACGGCAATCTTGAGGAAGAACGCGGCCTCGCTAGGCACGCGATGCGCATATACGAAAGG GCAACCCGCGCAGTCGCCGACGAAGATCGGGCGGACATGTTCAACTTCTACATTACGAAGTCAGCGTCAAACTTT GGTCTCCCGTCGACGAGACCCATCTACGAAAGAGCCATATCTGCACTGCCCGATGCCGAAGCCAAAGAGATGTGC CTCAAGTTTGCAGACATGGAGAAACGATTGGGCGAGATCGATCGCGCACGAGCAATTTACGGTCATGCCTCGCAA TTCTGCGATCCAAGGACCAACGTCGAATTCTGGACAAAATGGGAGCAGTTTGAAGTGAAGCATGGAAACGAGGAC ACGTTCAAAGAGATGCTCCGGATCAAGCGAGGTGTTCAGGCACAGTATAATACTGATGTCAACTTCATCGCGTCT CAGGCCCTTGCTCGCAGTAAGCAGCAAGTTGGCATGCCGACCGATGACTCTGCCAACGACAGAGGCTGGCATGCG GAACGTCAGGCGGTGGCACCACAAGGCTTTGTGGTGCCTGGTGGTGACGCTGGTGTCACGGACGTGCCCAGGGTC GAGGACAATCAGGCCTTCAACCCAGACGCCATAGAAGTTGATGCAGTTGCTGATGAATGA |
Gene | >Ophcf2|01800 ATGGCTGCCCGGTCCCTGGAATCGCAAGAACTACAGGCTATTGTGGGTAGCAACAAGTCACTGCCTGGCCGAGAG CCTGCTAACCGTTACCTGAGCAGTCCAGCGACGATGCCGCTTATGAGCAGGACATCCTACGCGACCCCGCAAGCG TCAAGCCATGGCTGGCTTACATCGAATTCAAGTCCCGCCATGGGAGTGTTTCTCAGCTGAACGTCGTGATGGCTC GCGCGTGTGCCCAATTGCCTCGTTCCTACAAACTGTGGAGGATGGTACAACGACTTATCCGTTGATGAGGCTTGC CAAGAACACTGCTAAATCTTCTTAGTTCCTCGCGTTCAGAGCGAAGCATGTGGCCAGAATTAATCCTGCTGCTTT TCCAGCCGAGTATCGGAAGGTCAACCTGCTTTTCGAAAAGGCACTGGTTCTCCTAAACAAGATGCCACAAATCTG GAGCTTGTATCTACAATTTCTTCTGCAGCAACCTGTCATTACCGTGGCTCGACGAGTCTTCGATCGAGCTCTGAG AGCTCTCCCGATCACACAACACAAGCGCATCTGGGTCATCTACTTGAAGTTCGCAAGCGCTGCTTCCGGTGAAAC ATTGTTGAAAGTCTGGAGACGGTACTTGCAATTGCACCCTGAAGATACCGAGGACTTCATCGAGCTTCTTCTCGA AGCCGGTGTCTATGCAGAAGCAGCCCAGCGTTACATGGATCTGCTGAACAACGTTCGCTTTTCGAGCAAGCAAGG CAAGGGTCACTATGATCTCTGGAGCGAGATGATAGATGTCCTTGTCCAGCATGCGCCAGATATGACTTCCCAACA AGAGACACCGATAGACGTGGAAAAGATCATCAGAAGCGGATTGGGGCGCTTCACCGACCAGAGCGGCAAGTTTTG GTCAGGATTGGCCACCTACTGGCTACGAAAAGGCTGCTTCGATCGGGCCCGCAACGTATTCGAAGAGGGAATTAC AAGCGTCCTCACCATTCGAGACTTTTCCTTGATCTTTGATGCCTACGTCGAGTTCGAGGAGTCTGTAATAGCCAC TCTAATCGACGTTGCCTCGAAGCGAGCTGAGCGGAACGCCTTCGACGGTGATGCTGATTTCGACTTAGACATCAG GATGATGCGGTTCGAGCATTTGATGGACCGCCGGCCCTTCCTCATCAATGATGTCCTCCTGCGGCAGAACCCGAA CAACGTATCCGAGTGGGAGAAGAGAGTCGCCCTTTGGGGGGACAACAAGACAGAGATTGTACTGACCTATACCAA GGCAATTGCCGCCATTAATCCTAAGCGAGCAGCAGGGTCGTTTCACAAAATTTGGGTCAACTATGCGCGCTTCTA CGAGCGAGCGGGCGATTTTCAGAATGCTCGAATCATCATGGAGAAAGCTGTCAAAGTCCCGTTTAAGTCCGTCAC GGAGCTTGCGGAAGTGTGGATTGAATGGGCGCAAATGGAGCTTCGCAACGAGAATTTCGACAGCGCTGTTCGCGT CATGGCTAAAGCCGTTCAAGCTCCCAAACGCTCGCAAGTTGATTATTTTGACGATAGCCTATCCCCCCAACAGCG GCTACATAAAAGCTGGAAGCTCTGGAGTTTCTACGTCGACCTCGTGGAGAGCGTGTCATCCTTGGAAGAGGTCAA AAAGGTCTACGAACGAGTCTTCGAGCTCCGCATTGCGACACCTCAGACGGTCGTGAACTACGCAAATCTCTTGGA AGAGCATCAATACTTTGAAGAGTCCTTCAAGGTCTACGAGCGCGGCCTGGACCTCTTCACATATCCGGTGGCGTT CGAGCTGTGGAACTTATATCTCACCAAGGCAGTCGACAGGAAAATTGGCATCGAGAGGCTACGGGATTTGTTCGA GCAAGCGGCAGAGGATTGTCCGCCAAAGTTTGCCAAGACCATATTTTTAATGTACGGCAATCTTGAGGAAGAACG CGGCCTCGCTAGGCACGCGATGCGCATATACGAAAGGGCAACCCGCGCAGTCGCCGACGAAGATCGGGCGGACAT GTTCAACTTCTACATTACGAAGTCAGCGTCAAACTTTGGTCTCCCGTCGACGAGACCCATCTACGAAAGAGCCAT ATCTGCACTGCCCGATGCCGAAGCCAAAGAGATGTGCCTCAAGTTTGCAGACATGGAGAAACGATTGGGCGAGAT CGATCGCGCACGAGCAATTTACGGTCATGCCTCGCAATTCTGCGATCCAAGGACCAACGTCGAATTCTGGACAAA ATGGGAGCAGTTTGAAGTGAAGCATGGAAACGAGGACACGTTCAAAGAGATGCTCCGGATCAAGCGAGGTGTTCA GGCACAGTATAATACTGATGTCAACTTCATCGCGTCTCAGGCCCTTGCTCGCAGTAAGCAGCAAGTTGGCATGCC GACCGATGACTCTGCCAACGACAGAGGCTGGCATGCGGAACGTCAGGCGGTGGCACCACAAGGCTTTGTGGTGCC TGGTGGTGACGCTGGTGTCACGGACGTGCCCAGGGTCGAGGACAATCAGGCCTTCAACCCAGACGCCATAGAAGT TGATGCAGTTGCTGATGAATGA |