© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|01798 |
| Gene name | |
| Location | scaffold_02:654658..655512 |
| Strand | - |
| Gene length (bp) | 854 |
| Transcript length (bp) | 435 |
| Coding sequence length (bp) | 435 |
| Protein length (aa) | 145 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01694 | Rhomboid | Rhomboid family | 1.7E-08 | 55 | 129 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0008233 | peptidase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0004175 | endopeptidase activity | No |
| GO:0008236 | serine-type peptidase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0017171 | serine hydrolase activity | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0016787 | hydrolase activity | No |
| GO:0110165 | cellular anatomical entity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.0608 | 0.058 | 0.0319 | 0.1311 | 0.366 | 0.0679 | 0.908 | 0.2339 | 0.5785 | 0.0186 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 43 | 22 |
| 2 | 92 | 114 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 6673 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01798 MPTARVFGVGRLRSLPLFTRFLAVAIAIFWVAGLPPAWGVRAWAALVPDKISFKTAYRLSTFPLVHLNIIHAAIN MVALTPLMERFENEHGTLTTISLFFGPLTTLPALLYLLIERGVLRSNSIVMGSSIWDIFVARLLDTYLV* |
| Coding | >Ophcf2|01798 ATGCCCACAGCTCGAGTGTTCGGCGTCGGTCGGCTCCGGTCTCTACCGCTCTTCACTCGATTCTTAGCCGTCGCG ATAGCAATCTTCTGGGTCGCCGGACTTCCGCCAGCGTGGGGTGTTAGGGCTTGGGCCGCGTTGGTTCCCGACAAG ATTTCATTTAAAACAGCGTATCGGCTTTCCACCTTTCCATTGGTGCATTTGAACATCATCCATGCTGCCATAAAT ATGGTCGCACTGACGCCTTTGATGGAGAGATTCGAGAACGAGCACGGGACATTAACTACGATTTCTCTCTTTTTC GGACCTTTAACAACTCTTCCGGCTTTGCTTTATCTCCTTATAGAGCGAGGTGTTCTGCGAAGTAACAGCATCGTG ATGGGATCAAGCATATGGGACATCTTTGTGGCGCGTTTATTGGATACATATTTGGTTTAG |
| Transcript | >Ophcf2|01798 ATGCCCACAGCTCGAGTGTTCGGCGTCGGTCGGCTCCGGTCTCTACCGCTCTTCACTCGATTCTTAGCCGTCGCG ATAGCAATCTTCTGGGTCGCCGGACTTCCGCCAGCGTGGGGTGTTAGGGCTTGGGCCGCGTTGGTTCCCGACAAG ATTTCATTTAAAACAGCGTATCGGCTTTCCACCTTTCCATTGGTGCATTTGAACATCATCCATGCTGCCATAAAT ATGGTCGCACTGACGCCTTTGATGGAGAGATTCGAGAACGAGCACGGGACATTAACTACGATTTCTCTCTTTTTC GGACCTTTAACAACTCTTCCGGCTTTGCTTTATCTCCTTATAGAGCGAGGTGTTCTGCGAAGTAACAGCATCGTG ATGGGATCAAGCATATGGGACATCTTTGTGGCGCGTTTATTGGATACATATTTGGTTTAG |
| Gene | >Ophcf2|01798 ATGCCCACAGCTCGAGTGTTCGGCGTCGGTCGGCTCCGGTCTCTACCGCTCTTCACTCGATTCTTAGCCGTCGCG ATAGCAATCTTCTGGGTCGCCGGACTTCCGCCAGCGTGGGGTGTTAGGGCTTGGGCCGCGTTGGTTCCCGACAAG ATTTCATTTAAAACAGGTATGTATCCAATTCCTCCATAGGAATCTCTGTGCGAGTCGCGTTCATGAGTTGTCCAC TACTTATTGGTATACTGACAATTATCTTTGCAGCGTATCGGCTTTCCACCTTTCCATTGGTGCATTTGAACATCA TCCATGCTGCCATAAATATGGTCGCACTGACGCCTTTGATGGAGAGATTCGAGAACGAGCACGGGACATTAACTA CGATTTCTCTCTTTTTCGGACGTTAGCACACAATTTTCCACTCGAATGAAGCTACCGACTGACTTCTTGCTAGCT TTAACAACTCTTCCGGCTTTGCTTTATCTCCTTATAGAGCGAGGTGTTCTGCGAAGTAACAGCATCGTGATGGGA TCAAGGTAACAAGCGTCGACTAATCGCATCATATCTCATGCTTACTCCTGACCCCATAGCATATGGGTTTTTCTT CTTCTTGGCGTTGAAGCGATACGAACATATAGATCTGACCCTCATTTAGTTATTGGCGTGTACCATATCCCAACT TGGACTACGCCGCTGCTAATGATATTTGTCGTCGCCGTTTTAATGCCGAGCACAAGTCTATTAGGACATCTTTGT GGCGCGTTTATTGGATACATATGTAAGATGCACCAGGATCCTACTCTTATTCTTGATAGTTGCGGAGTGTAAACT AACTCTTTCTTCAATTGAAGTTGGTTTAG |