Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|01792
Gene name
Locationscaffold_02:523764..524283
Strand-
Gene length (bp)519
Transcript length (bp)456
Coding sequence length (bp)456
Protein length (aa) 152

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03870 RNA_pol_Rpb8 RNA polymerase Rpb8 1.1E-45 13 151

GO

GO Term Description Terminal node
GO:0006351 transcription, DNA-templated Yes
GO:0032774 RNA biosynthetic process No
GO:0044237 cellular metabolic process No
GO:0009987 cellular process No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0008152 metabolic process No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:0046483 heterocycle metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0009058 biosynthetic process No
GO:1901576 organic substance biosynthetic process No
GO:0043170 macromolecule metabolic process No
GO:0018130 heterocycle biosynthetic process No
GO:0009059 macromolecule biosynthetic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0071704 organic substance metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0044238 primary metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0016070 RNA metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0097659 nucleic acid-templated transcription No
GO:0044249 cellular biosynthetic process No
GO:0019438 aromatic compound biosynthetic process No
GO:0008150 biological_process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0044271 cellular nitrogen compound biosynthetic process No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.6136 0.4191 0.1632 0.0635 0.1016 0.0255 0.2693 0.1168 0.1526 0.0088

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Orthologs

Orthofinder run ID4
Orthogroup5335
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|4472
Ophiocordyceps australis map64 (Brazil) OphauB2|1117
Ophiocordyceps camponoti-floridani Ophcf2|01792 (this protein)
Ophiocordyceps camponoti-rufipedis Ophun1|3259
Ophiocordyceps kimflemingae Ophio5|869
Ophiocordyceps subramaniannii Hirsu2|5079

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|01792
MSSATGGDATLCEESFTITDYNQSKYDRVARISCTSSDTQTVMTLDVNIELFPCAVSDSLHVVLTTTLSPDGAKE
DEKGWRDTGKGGDAAATIADLFDYVCYGKIYKFEETYDGNTINAYISFGGLLMSLQGPVKKLTPLRVDYVYLLIK
K*
Coding >Ophcf2|01792
ATGTCAAGTGCCACCGGTGGCGATGCAACTCTTTGTGAGGAAAGCTTCACCATAACCGACTACAATCAGTCGAAA
TATGATCGTGTCGCCAGAATCTCGTGCACGTCAAGTGATACGCAGACGGTTATGACTCTCGATGTCAATATTGAG
CTGTTTCCATGTGCCGTGTCTGACTCACTGCACGTTGTTCTTACCACCACGCTCTCCCCCGATGGCGCCAAAGAG
GACGAGAAAGGCTGGCGAGATACGGGCAAAGGAGGGGACGCGGCGGCGACTATAGCCGATTTATTCGATTATGTG
TGTTACGGCAAGATTTACAAATTCGAGGAGACGTATGACGGAAATACAATCAACGCATACATATCGTTTGGCGGC
CTCTTGATGTCACTACAAGGACCCGTCAAAAAGTTAACACCACTACGTGTCGACTACGTCTACCTTTTAATCAAG
AAATAA
Transcript >Ophcf2|01792
ATGTCAAGTGCCACCGGTGGCGATGCAACTCTTTGTGAGGAAAGCTTCACCATAACCGACTACAATCAGTCGAAA
TATGATCGTGTCGCCAGAATCTCGTGCACGTCAAGTGATACGCAGACGGTTATGACTCTCGATGTCAATATTGAG
CTGTTTCCATGTGCCGTGTCTGACTCACTGCACGTTGTTCTTACCACCACGCTCTCCCCCGATGGCGCCAAAGAG
GACGAGAAAGGCTGGCGAGATACGGGCAAAGGAGGGGACGCGGCGGCGACTATAGCCGATTTATTCGATTATGTG
TGTTACGGCAAGATTTACAAATTCGAGGAGACGTATGACGGAAATACAATCAACGCATACATATCGTTTGGCGGC
CTCTTGATGTCACTACAAGGACCCGTCAAAAAGTTAACACCACTACGTGTCGACTACGTCTACCTTTTAATCAAG
AAATAA
Gene >Ophcf2|01792
ATGTCAAGTGCCACCGGTGGCGATGCAACTCTTTGTGAGGAAAGCTTCACCATAACCGACTACAATCAGTCGAAA
TATGATCGTGTCGCCAGAATCTCGTGCACGTCAAGTGATACGCAGACGGTTATGACTCTCGATGTCAATATTGAG
CTGTTTCCATGTGCCGTGTCTGACTCACTGCACGTTGTTCTTACCACCACGCTCTCCCCCGATGGCGCCAAAGAG
GACGAGAAAGGCTGGCGAGATACGGGCAAAGGAGGGGACGCGGCGGCGACTATAGCCGATTTATTCGATTATGTG
TGTTACGGCAAGATTTACAAATTCGAGGAGACGTATGACGGAAATACAATGTGCGCACACCTGACCAAAATTGTT
TGTTGAATGGGCATATACTGACGATTGATTATCTGCAGCAACGCATACATATCGTTTGGCGGCCTCTTGATGTCA
CTACAAGGACCCGTCAAAAAGTTAACACCACTACGTGTCGACTACGTCTACCTTTTAATCAAGAAATAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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