Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|01789
Gene name
Locationscaffold_02:492215..493025
Strand-
Gene length (bp)810
Transcript length (bp)732
Coding sequence length (bp)732
Protein length (aa) 244

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03798 TRAM_LAG1_CLN8 TLC domain 2.2E-42 1 204

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0005575 cellular_component No
GO:0031224 intrinsic component of membrane No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.5

Transmembrane Domains

Domain # Start End Length
1 30 52 22
2 59 81 22
3 85 107 22
4 120 137 17
5 178 200 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|01789
MIQSILISVLAVWIRIVDDELGGMSWEERIWGYTGASGMIQALATGYFLWDLIVTSRNLDVFGYGTLAHALAALL
VFSFGFRPFVNYYACVFILWEISTPFLNVHWFLDKTKRTGSRAQLYNGYMLLFTFFSTRLVYGTYSSLICFFDVW
ASIGRSMDTVPRNDTIMAFVDDSATVPLWLGHIYLASNITLNGLNFYWFVMMIKAVRKRFQPGRTDQPLTEAEIS
IASGLAPDVSTNKTRRRA*
Coding >Ophcf2|01789
ATGATACAGAGCATCCTCATCAGCGTGCTCGCTGTTTGGATCAGGATCGTTGATGACGAGCTTGGCGGCATGAGC
TGGGAAGAGCGCATATGGGGCTACACCGGCGCTTCCGGCATGATCCAGGCATTGGCCACTGGCTACTTTCTCTGG
GACCTGATTGTCACGAGCCGCAACCTTGATGTTTTCGGCTACGGAACTTTGGCTCACGCCTTGGCCGCCTTACTC
GTCTTTTCCTTTGGCTTTAGACCATTCGTCAATTACTACGCCTGCGTGTTCATCCTCTGGGAAATCTCGACGCCT
TTTTTGAATGTCCACTGGTTTTTGGATAAGACGAAAAGGACCGGGTCTCGAGCACAGCTTTACAACGGTTACATG
TTGCTTTTCACCTTTTTCTCCACCCGCCTCGTCTACGGAACCTACTCTTCTTTGATTTGCTTCTTCGACGTCTGG
GCATCCATCGGCCGCAGCATGGACACTGTTCCACGAAACGACACAATCATGGCCTTTGTCGACGACAGTGCCACT
GTTCCCCTCTGGCTGGGTCACATTTACCTGGCCAGCAACATCACCCTGAACGGTTTGAACTTTTATTGGTTTGTC
ATGATGATCAAGGCTGTTCGAAAGCGCTTTCAGCCCGGCAGAACAGATCAGCCTCTGACCGAGGCGGAGATCTCT
ATTGCCTCAGGCTTAGCCCCAGATGTCTCAACCAACAAGACACGCCGCAGGGCATGA
Transcript >Ophcf2|01789
ATGATACAGAGCATCCTCATCAGCGTGCTCGCTGTTTGGATCAGGATCGTTGATGACGAGCTTGGCGGCATGAGC
TGGGAAGAGCGCATATGGGGCTACACCGGCGCTTCCGGCATGATCCAGGCATTGGCCACTGGCTACTTTCTCTGG
GACCTGATTGTCACGAGCCGCAACCTTGATGTTTTCGGCTACGGAACTTTGGCTCACGCCTTGGCCGCCTTACTC
GTCTTTTCCTTTGGCTTTAGACCATTCGTCAATTACTACGCCTGCGTGTTCATCCTCTGGGAAATCTCGACGCCT
TTTTTGAATGTCCACTGGTTTTTGGATAAGACGAAAAGGACCGGGTCTCGAGCACAGCTTTACAACGGTTACATG
TTGCTTTTCACCTTTTTCTCCACCCGCCTCGTCTACGGAACCTACTCTTCTTTGATTTGCTTCTTCGACGTCTGG
GCATCCATCGGCCGCAGCATGGACACTGTTCCACGAAACGACACAATCATGGCCTTTGTCGACGACAGTGCCACT
GTTCCCCTCTGGCTGGGTCACATTTACCTGGCCAGCAACATCACCCTGAACGGTTTGAACTTTTATTGGTTTGTC
ATGATGATCAAGGCTGTTCGAAAGCGCTTTCAGCCCGGCAGAACAGATCAGCCTCTGACCGAGGCGGAGATCTCT
ATTGCCTCAGGCTTAGCCCCAGATGTCTCAACCAACAAGACACGCCGCAGGGCATGA
Gene >Ophcf2|01789
ATGATACAGAGCATCCTCATCAGCGTGCTCGCTGTTTGGATCAGGATCGTTGATGACGAGCTTGGCGGCATGAGC
TGGGAAGAGCGCATATGGGGCTACACCGGCGCTTCCGGCATGATCCAGGCATTGGCCACTGGCTACTTTCTCTGG
GACCTGATTGTCACGAGCCGCAACCTTGATGTTTTCGGCTACGGAACTTTGGCTCACGCCTTGGCCGCCTTACTC
GTCTTTTCCTTTGGCTTTGTAAGAAAACCCCCCGTATTCGTTATTCTCTTCCTTACGATTGTCATTCTTGTGCAA
GATAAACTGACTTGAACGCAGAGACCATTCGTCAATTACTACGCCTGCGTGTTCATCCTCTGGGAAATCTCGACG
CCTTTTTTGAATGTCCACTGGTTTTTGGATAAGACGAAAAGGACCGGGTCTCGAGCACAGCTTTACAACGGTTAC
ATGTTGCTTTTCACCTTTTTCTCCACCCGCCTCGTCTACGGAACCTACTCTTCTTTGATTTGCTTCTTCGACGTC
TGGGCATCCATCGGCCGCAGCATGGACACTGTTCCACGAAACGACACAATCATGGCCTTTGTCGACGACAGTGCC
ACTGTTCCCCTCTGGCTGGGTCACATTTACCTGGCCAGCAACATCACCCTGAACGGTTTGAACTTTTATTGGTTT
GTCATGATGATCAAGGCTGTTCGAAAGCGCTTTCAGCCCGGCAGAACAGATCAGCCTCTGACCGAGGCGGAGATC
TCTATTGCCTCAGGCTTAGCCCCAGATGTCTCAACCAACAAGACACGCCGCAGGGCATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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