© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01789 |
| Gene name | |
| Location | scaffold_02:492215..493025 |
| Strand | - |
| Gene length (bp) | 810 |
| Transcript length (bp) | 732 |
| Coding sequence length (bp) | 732 |
| Protein length (aa) | 244 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03798 | TRAM_LAG1_CLN8 | TLC domain | 2.2E-42 | 1 | 204 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide | 0.1427 | 0.2185 | 0.0466 | 0.0403 | 0.2391 | 0.0055 | 0.6237 | 0.0903 | 0.2405 | 0.1699 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 30 | 52 | 22 |
| 2 | 59 | 81 | 22 |
| 3 | 85 | 107 | 22 |
| 4 | 120 | 137 | 17 |
| 5 | 178 | 200 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 1899 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01789 MIQSILISVLAVWIRIVDDELGGMSWEERIWGYTGASGMIQALATGYFLWDLIVTSRNLDVFGYGTLAHALAALL VFSFGFRPFVNYYACVFILWEISTPFLNVHWFLDKTKRTGSRAQLYNGYMLLFTFFSTRLVYGTYSSLICFFDVW ASIGRSMDTVPRNDTIMAFVDDSATVPLWLGHIYLASNITLNGLNFYWFVMMIKAVRKRFQPGRTDQPLTEAEIS IASGLAPDVSTNKTRRRA* |
| Coding | >Ophcf2|01789 ATGATACAGAGCATCCTCATCAGCGTGCTCGCTGTTTGGATCAGGATCGTTGATGACGAGCTTGGCGGCATGAGC TGGGAAGAGCGCATATGGGGCTACACCGGCGCTTCCGGCATGATCCAGGCATTGGCCACTGGCTACTTTCTCTGG GACCTGATTGTCACGAGCCGCAACCTTGATGTTTTCGGCTACGGAACTTTGGCTCACGCCTTGGCCGCCTTACTC GTCTTTTCCTTTGGCTTTAGACCATTCGTCAATTACTACGCCTGCGTGTTCATCCTCTGGGAAATCTCGACGCCT TTTTTGAATGTCCACTGGTTTTTGGATAAGACGAAAAGGACCGGGTCTCGAGCACAGCTTTACAACGGTTACATG TTGCTTTTCACCTTTTTCTCCACCCGCCTCGTCTACGGAACCTACTCTTCTTTGATTTGCTTCTTCGACGTCTGG GCATCCATCGGCCGCAGCATGGACACTGTTCCACGAAACGACACAATCATGGCCTTTGTCGACGACAGTGCCACT GTTCCCCTCTGGCTGGGTCACATTTACCTGGCCAGCAACATCACCCTGAACGGTTTGAACTTTTATTGGTTTGTC ATGATGATCAAGGCTGTTCGAAAGCGCTTTCAGCCCGGCAGAACAGATCAGCCTCTGACCGAGGCGGAGATCTCT ATTGCCTCAGGCTTAGCCCCAGATGTCTCAACCAACAAGACACGCCGCAGGGCATGA |
| Transcript | >Ophcf2|01789 ATGATACAGAGCATCCTCATCAGCGTGCTCGCTGTTTGGATCAGGATCGTTGATGACGAGCTTGGCGGCATGAGC TGGGAAGAGCGCATATGGGGCTACACCGGCGCTTCCGGCATGATCCAGGCATTGGCCACTGGCTACTTTCTCTGG GACCTGATTGTCACGAGCCGCAACCTTGATGTTTTCGGCTACGGAACTTTGGCTCACGCCTTGGCCGCCTTACTC GTCTTTTCCTTTGGCTTTAGACCATTCGTCAATTACTACGCCTGCGTGTTCATCCTCTGGGAAATCTCGACGCCT TTTTTGAATGTCCACTGGTTTTTGGATAAGACGAAAAGGACCGGGTCTCGAGCACAGCTTTACAACGGTTACATG TTGCTTTTCACCTTTTTCTCCACCCGCCTCGTCTACGGAACCTACTCTTCTTTGATTTGCTTCTTCGACGTCTGG GCATCCATCGGCCGCAGCATGGACACTGTTCCACGAAACGACACAATCATGGCCTTTGTCGACGACAGTGCCACT GTTCCCCTCTGGCTGGGTCACATTTACCTGGCCAGCAACATCACCCTGAACGGTTTGAACTTTTATTGGTTTGTC ATGATGATCAAGGCTGTTCGAAAGCGCTTTCAGCCCGGCAGAACAGATCAGCCTCTGACCGAGGCGGAGATCTCT ATTGCCTCAGGCTTAGCCCCAGATGTCTCAACCAACAAGACACGCCGCAGGGCATGA |
| Gene | >Ophcf2|01789 ATGATACAGAGCATCCTCATCAGCGTGCTCGCTGTTTGGATCAGGATCGTTGATGACGAGCTTGGCGGCATGAGC TGGGAAGAGCGCATATGGGGCTACACCGGCGCTTCCGGCATGATCCAGGCATTGGCCACTGGCTACTTTCTCTGG GACCTGATTGTCACGAGCCGCAACCTTGATGTTTTCGGCTACGGAACTTTGGCTCACGCCTTGGCCGCCTTACTC GTCTTTTCCTTTGGCTTTGTAAGAAAACCCCCCGTATTCGTTATTCTCTTCCTTACGATTGTCATTCTTGTGCAA GATAAACTGACTTGAACGCAGAGACCATTCGTCAATTACTACGCCTGCGTGTTCATCCTCTGGGAAATCTCGACG CCTTTTTTGAATGTCCACTGGTTTTTGGATAAGACGAAAAGGACCGGGTCTCGAGCACAGCTTTACAACGGTTAC ATGTTGCTTTTCACCTTTTTCTCCACCCGCCTCGTCTACGGAACCTACTCTTCTTTGATTTGCTTCTTCGACGTC TGGGCATCCATCGGCCGCAGCATGGACACTGTTCCACGAAACGACACAATCATGGCCTTTGTCGACGACAGTGCC ACTGTTCCCCTCTGGCTGGGTCACATTTACCTGGCCAGCAACATCACCCTGAACGGTTTGAACTTTTATTGGTTT GTCATGATGATCAAGGCTGTTCGAAAGCGCTTTCAGCCCGGCAGAACAGATCAGCCTCTGACCGAGGCGGAGATC TCTATTGCCTCAGGCTTAGCCCCAGATGTCTCAACCAACAAGACACGCCGCAGGGCATGA |