© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01755 |
| Gene name | |
| Location | scaffold_02:379233..380692 |
| Strand | + |
| Gene length (bp) | 1459 |
| Transcript length (bp) | 1272 |
| Coding sequence length (bp) | 1272 |
| Protein length (aa) | 424 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01556 | DnaJ_C | DnaJ C terminal domain | 2.1E-35 | 130 | 350 |
| PF00226 | DnaJ | DnaJ domain | 4.8E-22 | 17 | 81 |
| PF00684 | DnaJ_CXXCXGXG | DnaJ central domain | 1.1E-14 | 154 | 221 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0051082 | unfolded protein binding | Yes |
| GO:0031072 | heat shock protein binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:0005515 | protein binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus|Endoplasmic reticulum | 0.7074 | 0.5864 | 0.0168 | 0.143 | 0.4583 | 0.0223 | 0.67 | 0.0973 | 0.2647 | 0.0921 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 72.07 | 41.17 | 102.96 |
| Alive | In ants, during behavior modification | 68.64 | 38.87 | 98.42 |
| Dead | In ants, recently dead | 69.77 | 39.80 | 99.73 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.835393 | no |
| Alive | Dead | 0.939176 | no |
| Dead | Fungus | 0.890893 | no |
| Orthofinder run ID | 4 |
| Orthogroup | 4977 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01755 MAANAPFHGAAEEQEVDLYELLSVDRNASQEQLKKAYRKAALRYHPDKVPAEQRQESEIKFKEMTSAYEILSDEE KRHLYDTHGMAAFDGSRGAGAGVNLDDILSQMFGFDVGGPGRPQRPRKGPNDEQEYKVTLEELYKGKTVKFVANK QVVCAHCKGSGGKDKAKPNKCDRCKGNGKVEALRQIGPGMIGREAVICDHCLGSGQLFKDKDRCKKCKGKRTVQE KKALEMYIPRGSLQGERIVLEGEADQTPDQTPGDIIFTLEEEHHETFSRIGNDLSAELDITLGEALTGFSRVVLT HLDGRGISITRPRGKILRPGDCLRIEGEGMPLKRGESRGDLYLVVNIEFPADNWIKDDAAYEALSKMLPAPNSPI RADEVDEVEYEEGADVDKMGEDSGDPRFTDEWEDEDGEEEVPTQCQTQ* |
| Coding | >Ophcf2|01755 ATGGCCGCCAATGCGCCTTTTCATGGGGCTGCTGAGGAGCAAGAGGTTGATCTCTACGAGCTGCTGTCTGTCGAT AGGAATGCCTCGCAAGAGCAGTTAAAAAAGGCCTATCGCAAGGCCGCCCTTCGCTACCACCCGGACAAGGTCCCG GCCGAGCAACGGCAAGAATCCGAAATCAAGTTCAAGGAGATGACGAGCGCGTACGAGATTCTCAGCGACGAGGAG AAGCGCCATCTGTACGATACACACGGCATGGCAGCCTTCGATGGCTCTCGCGGTGCCGGCGCCGGCGTCAATCTC GATGATATCCTGTCGCAAATGTTTGGCTTCGACGTCGGTGGCCCCGGCAGACCTCAGCGGCCGCGGAAAGGCCCC AACGACGAGCAGGAATACAAGGTGACGCTGGAGGAGCTCTATAAGGGCAAGACGGTCAAGTTTGTCGCCAACAAA CAAGTCGTCTGCGCTCATTGCAAGGGCTCGGGCGGCAAGGACAAGGCCAAGCCAAACAAGTGTGATCGCTGCAAG GGTAACGGTAAGGTCGAGGCCTTGCGGCAGATCGGGCCTGGTATGATTGGGCGCGAGGCTGTCATTTGTGATCAC TGCCTTGGATCCGGCCAGCTCTTTAAAGATAAAGACCGCTGCAAGAAGTGCAAAGGGAAGCGCACCGTTCAGGAG AAGAAGGCGCTTGAGATGTACATCCCCCGAGGATCTCTACAAGGCGAGCGCATCGTGTTGGAGGGAGAGGCCGAT CAGACGCCCGATCAGACGCCGGGAGACATCATCTTCACCCTGGAAGAGGAGCACCACGAGACATTTTCTCGCATC GGTAACGATCTTTCTGCCGAACTCGACATCACGCTCGGCGAAGCTCTGACGGGTTTCTCCCGCGTCGTTCTCACC CACCTGGACGGGCGAGGCATCTCGATAACGCGACCGCGGGGCAAGATCCTGAGGCCTGGCGACTGTCTGAGGATT GAGGGAGAGGGCATGCCTCTGAAGCGAGGCGAGAGCCGGGGCGACTTGTATCTCGTCGTCAACATCGAATTCCCC GCGGACAACTGGATAAAGGACGATGCGGCGTACGAAGCTCTCAGCAAGATGCTACCCGCCCCGAACTCGCCCATC CGAGCCGACGAGGTGGACGAGGTCGAGTACGAGGAGGGAGCCGACGTGGACAAAATGGGCGAGGACTCTGGAGAC CCGCGCTTCACCGACGAATGGGAGGACGAAGACGGCGAAGAAGAAGTACCGACTCAATGCCAGACGCAATAG |
| Transcript | >Ophcf2|01755 ATGGCCGCCAATGCGCCTTTTCATGGGGCTGCTGAGGAGCAAGAGGTTGATCTCTACGAGCTGCTGTCTGTCGAT AGGAATGCCTCGCAAGAGCAGTTAAAAAAGGCCTATCGCAAGGCCGCCCTTCGCTACCACCCGGACAAGGTCCCG GCCGAGCAACGGCAAGAATCCGAAATCAAGTTCAAGGAGATGACGAGCGCGTACGAGATTCTCAGCGACGAGGAG AAGCGCCATCTGTACGATACACACGGCATGGCAGCCTTCGATGGCTCTCGCGGTGCCGGCGCCGGCGTCAATCTC GATGATATCCTGTCGCAAATGTTTGGCTTCGACGTCGGTGGCCCCGGCAGACCTCAGCGGCCGCGGAAAGGCCCC AACGACGAGCAGGAATACAAGGTGACGCTGGAGGAGCTCTATAAGGGCAAGACGGTCAAGTTTGTCGCCAACAAA CAAGTCGTCTGCGCTCATTGCAAGGGCTCGGGCGGCAAGGACAAGGCCAAGCCAAACAAGTGTGATCGCTGCAAG GGTAACGGTAAGGTCGAGGCCTTGCGGCAGATCGGGCCTGGTATGATTGGGCGCGAGGCTGTCATTTGTGATCAC TGCCTTGGATCCGGCCAGCTCTTTAAAGATAAAGACCGCTGCAAGAAGTGCAAAGGGAAGCGCACCGTTCAGGAG AAGAAGGCGCTTGAGATGTACATCCCCCGAGGATCTCTACAAGGCGAGCGCATCGTGTTGGAGGGAGAGGCCGAT CAGACGCCCGATCAGACGCCGGGAGACATCATCTTCACCCTGGAAGAGGAGCACCACGAGACATTTTCTCGCATC GGTAACGATCTTTCTGCCGAACTCGACATCACGCTCGGCGAAGCTCTGACGGGTTTCTCCCGCGTCGTTCTCACC CACCTGGACGGGCGAGGCATCTCGATAACGCGACCGCGGGGCAAGATCCTGAGGCCTGGCGACTGTCTGAGGATT GAGGGAGAGGGCATGCCTCTGAAGCGAGGCGAGAGCCGGGGCGACTTGTATCTCGTCGTCAACATCGAATTCCCC GCGGACAACTGGATAAAGGACGATGCGGCGTACGAAGCTCTCAGCAAGATGCTACCCGCCCCGAACTCGCCCATC CGAGCCGACGAGGTGGACGAGGTCGAGTACGAGGAGGGAGCCGACGTGGACAAAATGGGCGAGGACTCTGGAGAC CCGCGCTTCACCGACGAATGGGAGGACGAAGACGGCGAAGAAGAAGTACCGACTCAATGCCAGACGCAATAG |
| Gene | >Ophcf2|01755 ATGGCCGCCAATGCGCCTTTTCATGGGGCTGCTGAGGAGCAAGAGGTTGATCTCTACGGTGAGATTGCTTCGGGC TTCGAGTCGTCGCCTCTTTTCTAACATGACATCAAGAGCTGCTGTCTGTCGATAGGAATGCCTCGCAAGAGCAGT TAAAAAAGGCCTATCGCAAGGTCAATACCCCCCCCCCCCATATCTTCCCCATCTTCGTGTCCAGATCGCTCATCA TGCATGTTCTGCTCAGGCCGCCCTTCGCTACCACCCGGACAAGGTCCCGGCCGAGCAACGGCAAGAATCCGAAAT CAAGTTCAAGGAGATGACGAGCGCGTACGAGATTCTCAGCGACGAGGAGAAGCGCCATCTGTACGATACACACGG CATGGCAGCCTTCGATGGCTCTCGCGGTGCCGGCGCCGGCGTCAATCTCGATGATATCCTGTCGCAAATGTTTGG CTTCGACGTCGGTGGCCCCGGCAGACCTCAGCGGCCGCGGAAAGGCCCCAACGACGAGCAGGAATACAAGGTGAC GCTGGAGGAGCTCTATAAGGGCAAGACGGTCAAGTTTGTCGCCAACAAACAAGTCGTCTGCGCTCATTGCAAGGG CTCGGGCGGCAAGGACAAGGCCAAGCCAAACAAGTGTGATCGCTGCAAGGGTAACGGTAAGGTCGAGGCCTTGCG GCAGATCGGGCCTGGTATGATTGGGCGCGAGGCTGTCATTTGTGATCACTGCCTTGGATCCGGCCAGCTCTTTAA AGATAAAGACCGCTGCAAGAAGTGCAAAGGGAAGCGCACCGTTCAGGAGAAGAAGGCGCTTGAGATGTACATCCC CCGAGGATCTCTACAAGGCGAGCGCATCGTGTTGGAGGGAGAGGCCGATCAGACGCCCGATCAGACGCCGGGAGA CATCATCTTCACCCTGGAAGAGGAGCACCACGAGACATTTTCTCGCATCGGTAACGATCTTTCTGCCGAACTCGA CATCACGCTCGGCGAAGCTCTGACGGGTTTCTCCCGCGTCGTTCTCACCCACCTGGACGGGCGAGGCATCTCGAT AACGCGACCGCGGGGCAAGATCCTGAGGCCTGGCGACTGTCTGAGGATTGAGGGAGAGGGCATGCCTCTGAAGCG AGGCGAGAGCCGGGGCGACTTGTATCTCGTCGTCAACATCGAATTCCCCGCGGACAACTGGATAAAGGACGATGC GGCGTACGAAGCTCTCAGCAAGATGCTACCCGCCCCGAACTCGCCCATCCGAGCCGACGAGGTGGACGAGGTCGA GTACGAGGAGGGAGCCGACGTGGACAAAGTCAGTCTTCCTTTTCCTCCTCCTGACTCTTGGGGAACAGCCGCTGA CAGCTTGACATGACAGATGGGCGAGGACTCTGGAGACCCGCGCTTCACCGACGAATGGGAGGACGAAGACGGCGA AGAAGAAGTACCGACTCAATGCCAGACGCAATAG |