© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|01753 |
| Gene name | |
| Location | scaffold_02:374162..375977 |
| Strand | + |
| Gene length (bp) | 1815 |
| Transcript length (bp) | 1530 |
| Coding sequence length (bp) | 1530 |
| Protein length (aa) | 510 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00515 | TPR_1 | Tetratricopeptide repeat | 7.8E-09 | 37 | 67 |
| PF07719 | TPR_2 | Tetratricopeptide repeat | 1.4E-06 | 37 | 66 |
| PF13424 | TPR_12 | Tetratricopeptide repeat | 3.0E-07 | 35 | 97 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 3.2E-06 | 37 | 67 |
| PF13174 | TPR_6 | Tetratricopeptide repeat | 5.6E-02 | 39 | 64 |
| PF00564 | PB1 | PB1 domain | 5.4E-08 | 420 | 496 |
| PF13176 | TPR_7 | Tetratricopeptide repeat | 7.3E-06 | 39 | 68 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 51 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 56.43 | 32.21 | 80.64 |
| Alive | In ants, during behavior modification | 250.98 | 118.94 | 383.02 |
| Dead | In ants, recently dead | 186.04 | 96.11 | 275.97 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.116877 | no |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01753 MSLKQEIETWVAALNHYDNNEFEEALGEFDKIADTSKILFNMGVIHATLGEHEKAVECYQRAIKLDQYLAVAYFQ QGVSNFLLGDFEEALANFNDTLLYLRGNNQIDYAQLGLLFKLYSCEVLFNRGLCYIYLQQMDAGMQDLVYAVKEK VVEDHNVIDEAIGEEAEGYTVFSIPVGVVYRPNDAKVRNLKAKDYLGKARLVAASDRANAFTGFAGSEIRNAGKS EGKDDRPTDNISFAATNLVRPELQSRRQQSEPSGSRNVFPPTPPPENDRASRNGSIRGGGPQRPPAKLSIPSDVG SRRYMKSASPQDGRPWPTRSASTSTASRGFPRRPSRMTVDEEDMYPDDLYDMYQGGGGYGSRGSRPSGLARSRYA DDDDGSDYDDGSLDGAEFEMLSSNRRGPSYRSGSRAQSRRPDIRKIRVKVHAEDVRYVMVGVAIEFPDLVDCIRE KFNLRRRFKMKVPDEDAPDGDLITLADQDDLEMAIQSVTDTARRQRQDVARLEIWVYEL* |
| Coding | >Ophcf2|01753 ATGTCTCTCAAGCAGGAAATCGAGACATGGGTGGCGGCCCTGAATCATTACGACAACAATGAGTTCGAAGAAGCC CTCGGCGAATTCGACAAGATCGCCGACACCAGCAAGATTCTCTTCAACATGGGCGTCATTCATGCCACCCTCGGC GAGCATGAAAAGGCTGTCGAGTGTTACCAGCGAGCAATCAAACTTGATCAGTACCTTGCTGTCGCTTACTTTCAG CAAGGAGTGTCCAACTTTTTGCTAGGAGACTTCGAGGAGGCGCTCGCCAACTTCAACGACACTCTCTTGTACCTG CGCGGGAACAACCAAATCGACTATGCTCAGCTGGGACTTCTCTTCAAGCTCTACTCTTGCGAGGTCCTTTTCAAT CGTGGCCTGTGCTATATCTATCTCCAGCAGATGGACGCCGGCATGCAGGACTTGGTCTATGCTGTCAAGGAAAAG GTGGTTGAAGATCATAACGTCATTGACGAGGCCATTGGTGAAGAGGCCGAGGGATACACCGTCTTCTCCATCCCG GTCGGCGTCGTCTATCGCCCCAACGATGCTAAAGTACGGAATCTCAAGGCCAAGGACTATCTGGGCAAGGCGAGA CTGGTTGCTGCTTCGGATCGGGCCAACGCCTTTACCGGATTCGCCGGCTCTGAAATCAGAAACGCTGGAAAGTCC GAGGGTAAGGACGATCGGCCGACCGACAACATCTCATTTGCCGCCACAAACCTCGTTAGGCCCGAGCTTCAGTCC AGGAGACAGCAATCCGAGCCATCCGGTAGCCGCAACGTCTTCCCTCCGACGCCACCGCCCGAGAATGACCGCGCC AGCCGCAACGGTTCCATCCGGGGGGGAGGACCGCAGAGGCCGCCTGCGAAACTGAGCATCCCCTCGGATGTTGGC AGTCGGAGGTATATGAAGTCGGCCTCGCCGCAGGATGGTCGGCCGTGGCCGACGAGGTCGGCCTCCACGTCTACT GCGAGCAGGGGTTTCCCGCGAAGGCCTTCGAGGATGACTGTCGACGAAGAAGACATGTACCCGGATGATCTGTAC GACATGTATCAGGGAGGCGGAGGTTACGGGTCGAGGGGCAGCCGACCATCCGGTCTGGCGAGATCACGATATGCC GACGATGACGATGGCTCTGACTACGATGACGGGTCGCTGGACGGGGCTGAGTTCGAGATGCTGTCAAGCAACAGG CGCGGTCCGTCTTACAGGTCTGGCTCTCGCGCGCAATCGCGGCGGCCCGACATTCGCAAGATCAGAGTCAAGGTA CACGCCGAGGACGTCCGCTACGTCATGGTCGGTGTTGCCATTGAGTTTCCGGACCTCGTCGATTGTATCCGGGAA AAGTTCAATCTGCGTCGCAGATTCAAGATGAAGGTTCCGGACGAGGACGCGCCGGACGGTGACCTCATCACATTG GCGGACCAGGACGATTTAGAAATGGCCATCCAGTCAGTCACGGACACGGCGAGGAGGCAGAGACAGGATGTGGCG AGGTTGGAGATTTGGGTGTACGAGCTATGA |
| Transcript | >Ophcf2|01753 ATGTCTCTCAAGCAGGAAATCGAGACATGGGTGGCGGCCCTGAATCATTACGACAACAATGAGTTCGAAGAAGCC CTCGGCGAATTCGACAAGATCGCCGACACCAGCAAGATTCTCTTCAACATGGGCGTCATTCATGCCACCCTCGGC GAGCATGAAAAGGCTGTCGAGTGTTACCAGCGAGCAATCAAACTTGATCAGTACCTTGCTGTCGCTTACTTTCAG CAAGGAGTGTCCAACTTTTTGCTAGGAGACTTCGAGGAGGCGCTCGCCAACTTCAACGACACTCTCTTGTACCTG CGCGGGAACAACCAAATCGACTATGCTCAGCTGGGACTTCTCTTCAAGCTCTACTCTTGCGAGGTCCTTTTCAAT CGTGGCCTGTGCTATATCTATCTCCAGCAGATGGACGCCGGCATGCAGGACTTGGTCTATGCTGTCAAGGAAAAG GTGGTTGAAGATCATAACGTCATTGACGAGGCCATTGGTGAAGAGGCCGAGGGATACACCGTCTTCTCCATCCCG GTCGGCGTCGTCTATCGCCCCAACGATGCTAAAGTACGGAATCTCAAGGCCAAGGACTATCTGGGCAAGGCGAGA CTGGTTGCTGCTTCGGATCGGGCCAACGCCTTTACCGGATTCGCCGGCTCTGAAATCAGAAACGCTGGAAAGTCC GAGGGTAAGGACGATCGGCCGACCGACAACATCTCATTTGCCGCCACAAACCTCGTTAGGCCCGAGCTTCAGTCC AGGAGACAGCAATCCGAGCCATCCGGTAGCCGCAACGTCTTCCCTCCGACGCCACCGCCCGAGAATGACCGCGCC AGCCGCAACGGTTCCATCCGGGGGGGAGGACCGCAGAGGCCGCCTGCGAAACTGAGCATCCCCTCGGATGTTGGC AGTCGGAGGTATATGAAGTCGGCCTCGCCGCAGGATGGTCGGCCGTGGCCGACGAGGTCGGCCTCCACGTCTACT GCGAGCAGGGGTTTCCCGCGAAGGCCTTCGAGGATGACTGTCGACGAAGAAGACATGTACCCGGATGATCTGTAC GACATGTATCAGGGAGGCGGAGGTTACGGGTCGAGGGGCAGCCGACCATCCGGTCTGGCGAGATCACGATATGCC GACGATGACGATGGCTCTGACTACGATGACGGGTCGCTGGACGGGGCTGAGTTCGAGATGCTGTCAAGCAACAGG CGCGGTCCGTCTTACAGGTCTGGCTCTCGCGCGCAATCGCGGCGGCCCGACATTCGCAAGATCAGAGTCAAGGTA CACGCCGAGGACGTCCGCTACGTCATGGTCGGTGTTGCCATTGAGTTTCCGGACCTCGTCGATTGTATCCGGGAA AAGTTCAATCTGCGTCGCAGATTCAAGATGAAGGTTCCGGACGAGGACGCGCCGGACGGTGACCTCATCACATTG GCGGACCAGGACGATTTAGAAATGGCCATCCAGTCAGTCACGGACACGGCGAGGAGGCAGAGACAGGATGTGGCG AGGTTGGAGATTTGGGTGTACGAGCTATGA |
| Gene | >Ophcf2|01753 ATGTCTCTCAAGCAGGTGAGCATTCTGCTGCCGTACGTCAGCAGAGACGACGATTGACCGGTTCCGGCTAGGAAA TCGAGACATGGGTGGCGGCCCTGAATCATTACGACAACAATGAGTTCGAAGAAGCCCTCGGCGAATTCGACAAGA TCGCCGACACCAGCAAGATTCTCTTCAACATGGGCGTCATTCATGCCACCCTCGGCGAGCATGAAAAGGCTGTAA GACCCTCGTGCCTCTTATCCATGCAAAGCTCAACGCTGATATTTTTGTTCAGGTCGAGTGTTACCAGCGAGCAAT CAAACTTGATCAGTACCTTGCTGTCGCTTACTTTCAGCAAGGAGTGTCCAACTTTTTGCTAGGAGACTTCGAGGA GGCGCTCGCCAACTTCAACGACACTCTCTTGTACCTGCGCGGGAACAACCAAATCGACTATGCTCAGCTGGGACT TCTCTTCAAGCTCTACTCTTGCGAGGTCCTTTTCAATCGTGGCCTGTGCTATATCTATCTCCAGCAGATGGACGC CGGCATGCAGGACTTGGTCTATGCTGTCAAGGAAAAGGTGGTTGAAGATCATAACGTCATTGACGAGGCCATTGG TGAAGAGGCCGAGGTGAGTGGCTTTGTTCCCTGCACCGTTCAAGGCCGGATCACTCACAGCCGTGTCTCAGGGAT ACACCGTCTTCTCCATCCCGGTCGGCGTCGTCTATCGCCCCAACGATGCTAAAGTACGGAATCTCAAGGCCAAGG ACTATCTGGGCAAGGCGAGACTGGTTGCTGCTTCGGATCGGGCCAACGCCTTTACCGGATTCGCCGGCTCTGAAA TCAGAAACGTAAGTTCTCGTGGTATCTTGGGCCGATTAACCTCTTTACTCAACCCCAATTCTGTTGATAGGCTGG AAAGTCCGAGGGTAAGGACGATCGGCCGACCGACAACATCTCATTTGCCGCCACAAACCTCGTTAGGCCCGAGCT TCAGTCCAGGAGACAGCAATCCGAGCCATCCGGTAGCCGCAACGTCTTCCCTCCGACGCCACCGCCCGAGAATGA CCGCGCCAGCCGCAACGGTTCCATCCGGGGGGGAGGACCGCAGAGGCCGCCTGCGAAACTGAGCATCCCCTCGGA TGTTGGCAGTCGGAGGTATATGAAGTCGGCCTCGCCGCAGGATGGTCGGCCGTGGCCGACGAGGTCGGCCTCCAC GTCTACTGCGAGCAGGGGTTTCCCGCGAAGGCCTTCGAGGATGACTGTCGACGAAGAAGACATGTACCCGGATGA TCTGTACGACATGTATCAGGGAGGCGGAGGTTACGGGTCGAGGGGCAGCCGACCATCCGGTCTGGCGAGATCACG ATATGCCGACGATGACGATGGCTCTGACTACGATGACGGGTCGCTGGACGGGGCTGAGTTCGAGATGCTGTCAAG CAACAGGCGCGGTCCGTCTTACAGGTCTGGCTCTCGCGCGCAATCGCGGCGGCCCGACATTCGCAAGATCAGAGT CAAGGTACACGCCGAGGACGTCCGCTACGTCATGGTCGGTGTTGCCATTGAGTTTCCGGACCTCGTCGATTGTAT CCGGGAAAAGTTCAATCTGCGTCGCAGATTCAAGATGAAGGTTCCGGACGAGGACGCGCCGGACGGTGACCTCAT CACATTGGCGGACCAGGACGATTTAGAAATGGCCATCCAGTCAGTCACGGACACGGCGAGGAGGCAGAGACAGGA TGTGGCGAGGTTGGAGGTGAGCAAGCCCCCGACTGAGTCTCGTTGCGATTGGGCTAACGGCAGTGGCAGATTTGG GTGTACGAGCTATGA |