Protein ID | Ophcf2|01753 |
Gene name | |
Location | scaffold_02:374162..375977 |
Strand | + |
Gene length (bp) | 1815 |
Transcript length (bp) | 1530 |
Coding sequence length (bp) | 1530 |
Protein length (aa) | 510 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00515 | TPR_1 | Tetratricopeptide repeat | 7.8E-09 | 37 | 67 |
PF07719 | TPR_2 | Tetratricopeptide repeat | 1.4E-06 | 37 | 66 |
PF13424 | TPR_12 | Tetratricopeptide repeat | 3.0E-07 | 35 | 97 |
PF13181 | TPR_8 | Tetratricopeptide repeat | 3.2E-06 | 37 | 67 |
PF13174 | TPR_6 | Tetratricopeptide repeat | 5.6E-02 | 39 | 64 |
PF00564 | PB1 | PB1 domain | 5.4E-08 | 420 | 496 |
PF13176 | TPR_7 | Tetratricopeptide repeat | 7.3E-06 | 39 | 68 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005515 | protein binding | Yes |
GO:0005488 | binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 51 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|01753 MSLKQEIETWVAALNHYDNNEFEEALGEFDKIADTSKILFNMGVIHATLGEHEKAVECYQRAIKLDQYLAVAYFQ QGVSNFLLGDFEEALANFNDTLLYLRGNNQIDYAQLGLLFKLYSCEVLFNRGLCYIYLQQMDAGMQDLVYAVKEK VVEDHNVIDEAIGEEAEGYTVFSIPVGVVYRPNDAKVRNLKAKDYLGKARLVAASDRANAFTGFAGSEIRNAGKS EGKDDRPTDNISFAATNLVRPELQSRRQQSEPSGSRNVFPPTPPPENDRASRNGSIRGGGPQRPPAKLSIPSDVG SRRYMKSASPQDGRPWPTRSASTSTASRGFPRRPSRMTVDEEDMYPDDLYDMYQGGGGYGSRGSRPSGLARSRYA DDDDGSDYDDGSLDGAEFEMLSSNRRGPSYRSGSRAQSRRPDIRKIRVKVHAEDVRYVMVGVAIEFPDLVDCIRE KFNLRRRFKMKVPDEDAPDGDLITLADQDDLEMAIQSVTDTARRQRQDVARLEIWVYEL* |
Coding | >Ophcf2|01753 ATGTCTCTCAAGCAGGAAATCGAGACATGGGTGGCGGCCCTGAATCATTACGACAACAATGAGTTCGAAGAAGCC CTCGGCGAATTCGACAAGATCGCCGACACCAGCAAGATTCTCTTCAACATGGGCGTCATTCATGCCACCCTCGGC GAGCATGAAAAGGCTGTCGAGTGTTACCAGCGAGCAATCAAACTTGATCAGTACCTTGCTGTCGCTTACTTTCAG CAAGGAGTGTCCAACTTTTTGCTAGGAGACTTCGAGGAGGCGCTCGCCAACTTCAACGACACTCTCTTGTACCTG CGCGGGAACAACCAAATCGACTATGCTCAGCTGGGACTTCTCTTCAAGCTCTACTCTTGCGAGGTCCTTTTCAAT CGTGGCCTGTGCTATATCTATCTCCAGCAGATGGACGCCGGCATGCAGGACTTGGTCTATGCTGTCAAGGAAAAG GTGGTTGAAGATCATAACGTCATTGACGAGGCCATTGGTGAAGAGGCCGAGGGATACACCGTCTTCTCCATCCCG GTCGGCGTCGTCTATCGCCCCAACGATGCTAAAGTACGGAATCTCAAGGCCAAGGACTATCTGGGCAAGGCGAGA CTGGTTGCTGCTTCGGATCGGGCCAACGCCTTTACCGGATTCGCCGGCTCTGAAATCAGAAACGCTGGAAAGTCC GAGGGTAAGGACGATCGGCCGACCGACAACATCTCATTTGCCGCCACAAACCTCGTTAGGCCCGAGCTTCAGTCC AGGAGACAGCAATCCGAGCCATCCGGTAGCCGCAACGTCTTCCCTCCGACGCCACCGCCCGAGAATGACCGCGCC AGCCGCAACGGTTCCATCCGGGGGGGAGGACCGCAGAGGCCGCCTGCGAAACTGAGCATCCCCTCGGATGTTGGC AGTCGGAGGTATATGAAGTCGGCCTCGCCGCAGGATGGTCGGCCGTGGCCGACGAGGTCGGCCTCCACGTCTACT GCGAGCAGGGGTTTCCCGCGAAGGCCTTCGAGGATGACTGTCGACGAAGAAGACATGTACCCGGATGATCTGTAC GACATGTATCAGGGAGGCGGAGGTTACGGGTCGAGGGGCAGCCGACCATCCGGTCTGGCGAGATCACGATATGCC GACGATGACGATGGCTCTGACTACGATGACGGGTCGCTGGACGGGGCTGAGTTCGAGATGCTGTCAAGCAACAGG CGCGGTCCGTCTTACAGGTCTGGCTCTCGCGCGCAATCGCGGCGGCCCGACATTCGCAAGATCAGAGTCAAGGTA CACGCCGAGGACGTCCGCTACGTCATGGTCGGTGTTGCCATTGAGTTTCCGGACCTCGTCGATTGTATCCGGGAA AAGTTCAATCTGCGTCGCAGATTCAAGATGAAGGTTCCGGACGAGGACGCGCCGGACGGTGACCTCATCACATTG GCGGACCAGGACGATTTAGAAATGGCCATCCAGTCAGTCACGGACACGGCGAGGAGGCAGAGACAGGATGTGGCG AGGTTGGAGATTTGGGTGTACGAGCTATGA |
Transcript | >Ophcf2|01753 ATGTCTCTCAAGCAGGAAATCGAGACATGGGTGGCGGCCCTGAATCATTACGACAACAATGAGTTCGAAGAAGCC CTCGGCGAATTCGACAAGATCGCCGACACCAGCAAGATTCTCTTCAACATGGGCGTCATTCATGCCACCCTCGGC GAGCATGAAAAGGCTGTCGAGTGTTACCAGCGAGCAATCAAACTTGATCAGTACCTTGCTGTCGCTTACTTTCAG CAAGGAGTGTCCAACTTTTTGCTAGGAGACTTCGAGGAGGCGCTCGCCAACTTCAACGACACTCTCTTGTACCTG CGCGGGAACAACCAAATCGACTATGCTCAGCTGGGACTTCTCTTCAAGCTCTACTCTTGCGAGGTCCTTTTCAAT CGTGGCCTGTGCTATATCTATCTCCAGCAGATGGACGCCGGCATGCAGGACTTGGTCTATGCTGTCAAGGAAAAG GTGGTTGAAGATCATAACGTCATTGACGAGGCCATTGGTGAAGAGGCCGAGGGATACACCGTCTTCTCCATCCCG GTCGGCGTCGTCTATCGCCCCAACGATGCTAAAGTACGGAATCTCAAGGCCAAGGACTATCTGGGCAAGGCGAGA CTGGTTGCTGCTTCGGATCGGGCCAACGCCTTTACCGGATTCGCCGGCTCTGAAATCAGAAACGCTGGAAAGTCC GAGGGTAAGGACGATCGGCCGACCGACAACATCTCATTTGCCGCCACAAACCTCGTTAGGCCCGAGCTTCAGTCC AGGAGACAGCAATCCGAGCCATCCGGTAGCCGCAACGTCTTCCCTCCGACGCCACCGCCCGAGAATGACCGCGCC AGCCGCAACGGTTCCATCCGGGGGGGAGGACCGCAGAGGCCGCCTGCGAAACTGAGCATCCCCTCGGATGTTGGC AGTCGGAGGTATATGAAGTCGGCCTCGCCGCAGGATGGTCGGCCGTGGCCGACGAGGTCGGCCTCCACGTCTACT GCGAGCAGGGGTTTCCCGCGAAGGCCTTCGAGGATGACTGTCGACGAAGAAGACATGTACCCGGATGATCTGTAC GACATGTATCAGGGAGGCGGAGGTTACGGGTCGAGGGGCAGCCGACCATCCGGTCTGGCGAGATCACGATATGCC GACGATGACGATGGCTCTGACTACGATGACGGGTCGCTGGACGGGGCTGAGTTCGAGATGCTGTCAAGCAACAGG CGCGGTCCGTCTTACAGGTCTGGCTCTCGCGCGCAATCGCGGCGGCCCGACATTCGCAAGATCAGAGTCAAGGTA CACGCCGAGGACGTCCGCTACGTCATGGTCGGTGTTGCCATTGAGTTTCCGGACCTCGTCGATTGTATCCGGGAA AAGTTCAATCTGCGTCGCAGATTCAAGATGAAGGTTCCGGACGAGGACGCGCCGGACGGTGACCTCATCACATTG GCGGACCAGGACGATTTAGAAATGGCCATCCAGTCAGTCACGGACACGGCGAGGAGGCAGAGACAGGATGTGGCG AGGTTGGAGATTTGGGTGTACGAGCTATGA |
Gene | >Ophcf2|01753 ATGTCTCTCAAGCAGGTGAGCATTCTGCTGCCGTACGTCAGCAGAGACGACGATTGACCGGTTCCGGCTAGGAAA TCGAGACATGGGTGGCGGCCCTGAATCATTACGACAACAATGAGTTCGAAGAAGCCCTCGGCGAATTCGACAAGA TCGCCGACACCAGCAAGATTCTCTTCAACATGGGCGTCATTCATGCCACCCTCGGCGAGCATGAAAAGGCTGTAA GACCCTCGTGCCTCTTATCCATGCAAAGCTCAACGCTGATATTTTTGTTCAGGTCGAGTGTTACCAGCGAGCAAT CAAACTTGATCAGTACCTTGCTGTCGCTTACTTTCAGCAAGGAGTGTCCAACTTTTTGCTAGGAGACTTCGAGGA GGCGCTCGCCAACTTCAACGACACTCTCTTGTACCTGCGCGGGAACAACCAAATCGACTATGCTCAGCTGGGACT TCTCTTCAAGCTCTACTCTTGCGAGGTCCTTTTCAATCGTGGCCTGTGCTATATCTATCTCCAGCAGATGGACGC CGGCATGCAGGACTTGGTCTATGCTGTCAAGGAAAAGGTGGTTGAAGATCATAACGTCATTGACGAGGCCATTGG TGAAGAGGCCGAGGTGAGTGGCTTTGTTCCCTGCACCGTTCAAGGCCGGATCACTCACAGCCGTGTCTCAGGGAT ACACCGTCTTCTCCATCCCGGTCGGCGTCGTCTATCGCCCCAACGATGCTAAAGTACGGAATCTCAAGGCCAAGG ACTATCTGGGCAAGGCGAGACTGGTTGCTGCTTCGGATCGGGCCAACGCCTTTACCGGATTCGCCGGCTCTGAAA TCAGAAACGTAAGTTCTCGTGGTATCTTGGGCCGATTAACCTCTTTACTCAACCCCAATTCTGTTGATAGGCTGG AAAGTCCGAGGGTAAGGACGATCGGCCGACCGACAACATCTCATTTGCCGCCACAAACCTCGTTAGGCCCGAGCT TCAGTCCAGGAGACAGCAATCCGAGCCATCCGGTAGCCGCAACGTCTTCCCTCCGACGCCACCGCCCGAGAATGA CCGCGCCAGCCGCAACGGTTCCATCCGGGGGGGAGGACCGCAGAGGCCGCCTGCGAAACTGAGCATCCCCTCGGA TGTTGGCAGTCGGAGGTATATGAAGTCGGCCTCGCCGCAGGATGGTCGGCCGTGGCCGACGAGGTCGGCCTCCAC GTCTACTGCGAGCAGGGGTTTCCCGCGAAGGCCTTCGAGGATGACTGTCGACGAAGAAGACATGTACCCGGATGA TCTGTACGACATGTATCAGGGAGGCGGAGGTTACGGGTCGAGGGGCAGCCGACCATCCGGTCTGGCGAGATCACG ATATGCCGACGATGACGATGGCTCTGACTACGATGACGGGTCGCTGGACGGGGCTGAGTTCGAGATGCTGTCAAG CAACAGGCGCGGTCCGTCTTACAGGTCTGGCTCTCGCGCGCAATCGCGGCGGCCCGACATTCGCAAGATCAGAGT CAAGGTACACGCCGAGGACGTCCGCTACGTCATGGTCGGTGTTGCCATTGAGTTTCCGGACCTCGTCGATTGTAT CCGGGAAAAGTTCAATCTGCGTCGCAGATTCAAGATGAAGGTTCCGGACGAGGACGCGCCGGACGGTGACCTCAT CACATTGGCGGACCAGGACGATTTAGAAATGGCCATCCAGTCAGTCACGGACACGGCGAGGAGGCAGAGACAGGA TGTGGCGAGGTTGGAGGTGAGCAAGCCCCCGACTGAGTCTCGTTGCGATTGGGCTAACGGCAGTGGCAGATTTGG GTGTACGAGCTATGA |