© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01692 |
| Gene name | |
| Location | scaffold_02:162039..165652 |
| Strand | + |
| Gene length (bp) | 3613 |
| Transcript length (bp) | 2310 |
| Coding sequence length (bp) | 2310 |
| Protein length (aa) | 770 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01793 | Glyco_transf_15 | Glycolipid 2-alpha-mannosyltransferase | 1.2E-96 | 109 | 422 |
| PF00828 | Ribosomal_L27A | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | 7.8E-32 | 533 | 655 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0000030 | mannosyltransferase activity | Yes |
| GO:0006486 | protein glycosylation | Yes |
| GO:0019538 | protein metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0036211 | protein modification process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0016740 | transferase activity | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0016758 | hexosyltransferase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0043413 | macromolecule glycosylation | No |
| GO:0043412 | macromolecule modification | No |
| GO:0070085 | glycosylation | No |
| GO:0008150 | biological_process | No |
| GO:0016757 | glycosyltransferase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 53 | 75 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01692 MDLFRRASRMVPSPRPLQLPEHDEKRAPSRRKGFASRLAFFRRPLRLRGNSSVSVPLGVVIIFPLLVVVLILVLF VRHPSSPSRIMMPAGAPPSIRKISEKHDKVFVTGCLEPDTSKPRANAAFVVLARNKELDGVIQSIKSVERHFNRW YHYPYVFLNDGEFDDTFKDTVRNYTSANVEFGRVGPDMWGYPDWIDPKVAKEGIAKQGDAAVMYGGLESYHAMCR FYSGFFYKHELLLKYDWYWRVEPEITYFCDITYDPFLKMMEHNKTYGFTIAVKELRETVPNIFRYASAYKRVNNI TSQGLWEMFVEPQDPADEKRKDPNLPEEVLQTDPSKLAPAEIDPEAMEGEKYNMCHFWSNFEIARLDWFRSKEYN DFFDMMDRSGGFWMERWGDAPIHSLAAGALLSPGDIHYFRDFGYRHTTIQHCPANAPARQLPRQPYLETTTLDEK KRIEEDQYWANWDEVKENGVGCRCRCDTDIVDVEGKEGSCLADCLAGIALQQPRHASILASLANNKGAVKERRRV GRGPSSGRGKTSGRGHKGQGQHGKVKPWFQGGQTPLIVRHGRMGFENKRALKMSEVNLDRLQDWIDNGRIDASKP ITPKEMILSKLSGSIKDGIKILSRGVTKLRQPIKITASRASAGAIAAIEAAGGSIITRYYTKTALRRLVRGESVH SDEPLPRGEEFVEGMVARAREAGFPYRLPDATSRRDIEYYRDAAHRGYLSGMLKKGESPSLYWKVPEEGREKKRK RKKGVVKVQEKKVAVTTMW* |
| Coding | >Ophcf2|01692 ATGGATCTCTTCAGGCGGGCTTCGAGGATGGTCCCCTCGCCCAGACCGCTGCAGTTACCCGAGCACGACGAGAAG CGGGCGCCCTCGAGACGCAAAGGCTTCGCTTCCCGTTTGGCTTTCTTTCGCAGGCCTCTGAGGTTACGCGGCAAC TCGTCCGTCTCCGTCCCGCTCGGCGTCGTCATCATCTTTCCCCTCCTCGTCGTCGTCCTCATCCTCGTCCTCTTC GTCAGGCATCCCAGCTCTCCCAGCCGCATCATGATGCCCGCTGGCGCTCCGCCCTCTATCCGCAAGATAAGCGAA AAGCATGACAAGGTCTTCGTCACTGGTTGCCTCGAGCCCGACACTAGCAAGCCCCGAGCCAATGCCGCCTTTGTC GTCCTCGCCCGCAACAAGGAGCTCGACGGCGTCATCCAGTCCATCAAGTCGGTCGAGCGCCACTTCAATCGCTGG TATCACTATCCCTACGTCTTCCTCAACGACGGCGAGTTCGACGACACCTTCAAGGACACCGTCCGCAACTACACG TCGGCAAATGTCGAGTTTGGCAGGGTCGGGCCCGACATGTGGGGTTATCCTGACTGGATCGATCCCAAGGTTGCC AAGGAGGGCATTGCCAAACAGGGAGACGCTGCCGTCATGTACGGCGGCTTGGAGAGCTATCATGCCATGTGTCGC TTCTACTCTGGTTTTTTTTACAAGCACGAACTCTTGCTCAAGTACGATTGGTACTGGCGCGTCGAGCCCGAAATC ACCTACTTTTGCGACATCACCTACGACCCCTTTCTCAAGATGATGGAGCACAACAAGACGTACGGCTTCACCATT GCCGTCAAGGAGCTCCGCGAGACGGTGCCCAACATCTTTCGCTACGCCTCGGCATACAAGCGCGTCAACAACATT ACCTCGCAGGGCCTCTGGGAGATGTTTGTCGAGCCCCAGGACCCCGCCGACGAGAAGCGCAAGGACCCCAACCTT CCCGAAGAAGTCCTCCAGACCGATCCCAGCAAGCTCGCGCCGGCCGAGATCGATCCCGAGGCTATGGAGGGCGAA AAGTACAACATGTGTCATTTTTGGTCCAACTTCGAGATTGCCCGCCTCGACTGGTTCCGCAGCAAAGAGTACAAC GACTTTTTCGACATGATGGATCGCAGTGGTGGCTTCTGGATGGAACGGTGGGGTGACGCGCCCATTCACTCGTTG GCCGCAGGAGCCCTGCTGTCTCCTGGCGATATCCATTACTTTCGCGACTTTGGCTACCGGCACACGACGATACAG CACTGTCCCGCCAACGCGCCGGCCCGGCAGCTACCACGCCAGCCTTACCTCGAGACGACGACGTTGGACGAGAAG AAGCGGATCGAGGAGGACCAATACTGGGCCAACTGGGACGAGGTCAAGGAGAACGGCGTCGGTTGCCGCTGTCGA TGCGACACGGACATCGTCGACGTCGAGGGCAAGGAGGGATCTTGCCTGGCCGACTGCCTGGCGGGCATCGCGCTC CAGCAGCCACGGCATGCTTCGATCCTCGCCAGCCTGGCCAACAACAAGGGGGCTGTCAAAGAACGGAGGAGGGTC GGGCGAGGGCCGTCGTCTGGTCGTGGCAAGACTTCGGGGAGAGGTCACAAGGGTCAGGGTCAGCATGGGAAGGTG AAGCCTTGGTTTCAAGGTGGACAGACGCCGTTGATTGTGAGGCATGGACGAATGGGATTTGAGAATAAACGAGCG CTCAAGATGTCGGAGGTCAACCTCGATAGGCTGCAGGACTGGATCGACAATGGACGGATAGACGCGAGCAAGCCC ATTACGCCCAAGGAGATGATCCTCAGCAAGCTTTCGGGCAGCATCAAGGACGGCATCAAGATTCTCTCCCGCGGC GTAACCAAACTCCGGCAACCCATCAAGATAACGGCATCGCGAGCCTCGGCGGGCGCCATCGCAGCCATCGAGGCA GCGGGCGGGAGCATCATCACGCGCTACTACACCAAGACGGCGCTACGGCGTCTTGTGCGAGGCGAGTCGGTGCAC AGCGACGAGCCGCTTCCTCGGGGAGAGGAGTTCGTCGAGGGGATGGTGGCCCGGGCGCGCGAGGCGGGGTTCCCG TACCGGTTGCCGGACGCGACGAGCAGGAGGGATATCGAGTATTATCGCGATGCGGCGCATAGGGGGTATCTGAGT GGGATGCTGAAGAAGGGGGAGTCGCCGAGTCTGTATTGGAAGGTTCCCGAGGAGGGGAGGGAGAAGAAGAGGAAG AGGAAGAAGGGGGTTGTGAAGGTTCAGGAGAAGAAGGTGGCTGTTACTACGATGTGGTGA |
| Transcript | >Ophcf2|01692 ATGGATCTCTTCAGGCGGGCTTCGAGGATGGTCCCCTCGCCCAGACCGCTGCAGTTACCCGAGCACGACGAGAAG CGGGCGCCCTCGAGACGCAAAGGCTTCGCTTCCCGTTTGGCTTTCTTTCGCAGGCCTCTGAGGTTACGCGGCAAC TCGTCCGTCTCCGTCCCGCTCGGCGTCGTCATCATCTTTCCCCTCCTCGTCGTCGTCCTCATCCTCGTCCTCTTC GTCAGGCATCCCAGCTCTCCCAGCCGCATCATGATGCCCGCTGGCGCTCCGCCCTCTATCCGCAAGATAAGCGAA AAGCATGACAAGGTCTTCGTCACTGGTTGCCTCGAGCCCGACACTAGCAAGCCCCGAGCCAATGCCGCCTTTGTC GTCCTCGCCCGCAACAAGGAGCTCGACGGCGTCATCCAGTCCATCAAGTCGGTCGAGCGCCACTTCAATCGCTGG TATCACTATCCCTACGTCTTCCTCAACGACGGCGAGTTCGACGACACCTTCAAGGACACCGTCCGCAACTACACG TCGGCAAATGTCGAGTTTGGCAGGGTCGGGCCCGACATGTGGGGTTATCCTGACTGGATCGATCCCAAGGTTGCC AAGGAGGGCATTGCCAAACAGGGAGACGCTGCCGTCATGTACGGCGGCTTGGAGAGCTATCATGCCATGTGTCGC TTCTACTCTGGTTTTTTTTACAAGCACGAACTCTTGCTCAAGTACGATTGGTACTGGCGCGTCGAGCCCGAAATC ACCTACTTTTGCGACATCACCTACGACCCCTTTCTCAAGATGATGGAGCACAACAAGACGTACGGCTTCACCATT GCCGTCAAGGAGCTCCGCGAGACGGTGCCCAACATCTTTCGCTACGCCTCGGCATACAAGCGCGTCAACAACATT ACCTCGCAGGGCCTCTGGGAGATGTTTGTCGAGCCCCAGGACCCCGCCGACGAGAAGCGCAAGGACCCCAACCTT CCCGAAGAAGTCCTCCAGACCGATCCCAGCAAGCTCGCGCCGGCCGAGATCGATCCCGAGGCTATGGAGGGCGAA AAGTACAACATGTGTCATTTTTGGTCCAACTTCGAGATTGCCCGCCTCGACTGGTTCCGCAGCAAAGAGTACAAC GACTTTTTCGACATGATGGATCGCAGTGGTGGCTTCTGGATGGAACGGTGGGGTGACGCGCCCATTCACTCGTTG GCCGCAGGAGCCCTGCTGTCTCCTGGCGATATCCATTACTTTCGCGACTTTGGCTACCGGCACACGACGATACAG CACTGTCCCGCCAACGCGCCGGCCCGGCAGCTACCACGCCAGCCTTACCTCGAGACGACGACGTTGGACGAGAAG AAGCGGATCGAGGAGGACCAATACTGGGCCAACTGGGACGAGGTCAAGGAGAACGGCGTCGGTTGCCGCTGTCGA TGCGACACGGACATCGTCGACGTCGAGGGCAAGGAGGGATCTTGCCTGGCCGACTGCCTGGCGGGCATCGCGCTC CAGCAGCCACGGCATGCTTCGATCCTCGCCAGCCTGGCCAACAACAAGGGGGCTGTCAAAGAACGGAGGAGGGTC GGGCGAGGGCCGTCGTCTGGTCGTGGCAAGACTTCGGGGAGAGGTCACAAGGGTCAGGGTCAGCATGGGAAGGTG AAGCCTTGGTTTCAAGGTGGACAGACGCCGTTGATTGTGAGGCATGGACGAATGGGATTTGAGAATAAACGAGCG CTCAAGATGTCGGAGGTCAACCTCGATAGGCTGCAGGACTGGATCGACAATGGACGGATAGACGCGAGCAAGCCC ATTACGCCCAAGGAGATGATCCTCAGCAAGCTTTCGGGCAGCATCAAGGACGGCATCAAGATTCTCTCCCGCGGC GTAACCAAACTCCGGCAACCCATCAAGATAACGGCATCGCGAGCCTCGGCGGGCGCCATCGCAGCCATCGAGGCA GCGGGCGGGAGCATCATCACGCGCTACTACACCAAGACGGCGCTACGGCGTCTTGTGCGAGGCGAGTCGGTGCAC AGCGACGAGCCGCTTCCTCGGGGAGAGGAGTTCGTCGAGGGGATGGTGGCCCGGGCGCGCGAGGCGGGGTTCCCG TACCGGTTGCCGGACGCGACGAGCAGGAGGGATATCGAGTATTATCGCGATGCGGCGCATAGGGGGTATCTGAGT GGGATGCTGAAGAAGGGGGAGTCGCCGAGTCTGTATTGGAAGGTTCCCGAGGAGGGGAGGGAGAAGAAGAGGAAG AGGAAGAAGGGGGTTGTGAAGGTTCAGGAGAAGAAGGTGGCTGTTACTACGATGTGGTGA |
| Gene | >Ophcf2|01692 ATGGATCTCTTCAGGCGGGCTTCGAGGATGGTCCCCTCGCCCAGACCGCTGCAGTTACCCGAGCACGACGAGAAG CGGGCGCCCTCGAGACGCAAAGGCTTCGCTTCCCGTTTGGCTTTCTTTCGCAGGCCTCTGAGGTTACGCGGCAAC TCGTCCGTCTCCGTCCCGCTCGGCGTCGTCATCATCTTTCCCCTCCTCGTCGTCGTCCTCATCCTCGTCCTCTTC GTCAGGCATCCCAGCTCTCCCAGCCGCATCATGATGCCCGCTGGCGCTCCGCCCTCTATCCGGTTAGCTCCATGA CCCGCGCTTGGCCCGCTCTTTGCTGACCCGAGTCGCGTCTGCAGCAAGATAAGCGAAAAGCATGACAAGGTCTTC GTCACTGGTTGCCTCGAGCCCGACACTAGCAAGCCCCGAGCCAATGCCGCCTTTGTCGTCCTCGCCCGCAACAAG GAGCTCGACGGCGTCATCCAGTCCATCAAGTCGGTCGAGCGCCACTTCAATCGCTGGTATCACTATCCCTACGTC TTCCTCAACGACGGCGAGTTCGACGACACCTTCAAGGACACCGTCCGCAACTACACGTCGGCAAATGTCGAGTTT GGCAGGGTCGGGCCCGACATGTGGGGTTATCCTGACTGGATCGATCCCAAGGTTGCCAAGGAGGGCATTGCCAAA CAGGGAGACGCTGCCGTCATGTACGGCGGCTTGGAGAGCTATCATGCCATGTGTCGCTTCTACTCTGGGTAAGCC GCCGCCGCCCATCTTTACTAGTCCGCTTCGGTGCCGTTGCTAAAGATGACGTCGACGCACAGTTTTTTTTACAAG CACGAACTCTTGCTCAAGTACGATTGGTACTGGCGCGTCGAGCCCGAAATCACCTACTTTTGCGACATCACCTAG TAAGCGCACCTCGCACGGCCCCCGTCGGCCCCCGTCGCCCACTGACTCTGCTGCCCGTCCCTCCAGCGACCCCTT TCTCAAGATGATGGAGCACAACAAGACGTACGGCTTCACCATTGCCGTCAAGGAGCTCCGCGAGACGGTGCCCAA CATCTTTCGCTACGCCTCGGCATACAAGCGCGTCAACAACATTACCTCGCAGGGCCTCTGGGAGATGTTTGTCGA GCCCCAGGACCCCGCCGACGAGAAGCGCAAGGACCCCAACCTTCCCGAAGAAGTCCTCCAGACCGATCCCAGCAA GCTCGCGCCGGCCGAGATCGATCCCGAGGCTATGGAGGGCGAAAAGTACAACATGTGTCATTTTTGGTCCAACTT CGAGATTGCCCGCCTCGACTGGTTCCGCAGCAAAGAGTACAACGACTTTTTCGACATGATGGATCGCAGTGGTGG CTTCTGGATGGAACGGGTTCGTTTCCTCCCCTTTCAGATCCGCAAGTCTCGCCTGTTGTCTGACCGTCGATAGTG GGGTGACGCGCCCATTCACTCGTTGGCCGCAGGAGCCCTGCTGTCTCCTGGCGATATCCATTACTTTCGCGACTT TGGCTACCGGCACACGACGATACAGCACTGTCCCGCCAACGCGCCGGCCCGGCAGCTACCACGCCAGCCTTACCT CGAGACGACGACGTTGGACGAGAAGAAGCGGATCGAGGAGGACCAATACTGGGCCAACTGGGACGAGGTCAAGGA GAACGGCGTCGGTTGCCGCTGTCGATGCGACACGGACATCGTCGACGTCGAGGGCAAGGAGGGATCTTGCCTGGC CGAGTGGGTCGACGTGGCGGGCGGCTGGGCGAGCCCTTGAGAAGCTTGACGAGGTCGGCTTGGTCTCGACGACAG AGGAGGGAGGAAGAACGGCGCCGGGCCGCATCCTTGAGTCCCGCGAGTGGCGCGTCTGAAGGATAGGCCGGCCGC CCAAGCGCCCATGTCCTCCTCCGAGGAACAGCGCAGCCTCCGGGGCTGGCTCAGAGGCACGTCGAGGAAAGGGCG GCGAGGAGACGATGCCGGAAGAGCACAGCCGTTTGACACGCAGCCATGTTGGCAAGACGAGAAGAACGGCATCAC GACTTTTTTAATCTCAGCGAAACAGAATTTGGGGGCGTCGATATGCGAGGGAGCGCACCACATGTGGGATAAGGC ATCATCATGTCGGCGACAGCCGGCTTGTACACACATCGGGGTTTTTTTCCAAGGCTTCAGAGTCGGGCAGGCGGA CGGGCCGCTCGGTGGCACAAATGTGGGAACAGCATTTTGTTTTGGCGGCAGCGAGTCTTGTTTGATGCTCTTTGA ATCAAGACTAATTCTTTACCATTTACGTGTTTACTTTTGGACTCGGCCGTTGATGACGATGCTGAAGACTCGATA CAAGGAGAACTACGCCGAGGTTGAGGGCCGACCGTGTCTACATACATAAGCAGTCTCGCAGTATAAGCGGCTCAT CGTCCTTGTCCTGCCCTCGGAGGTTGAAGATGTTGAAGCGTGGAGCCTGGAGGAAGAGATGGTGGTGTAGGGTAG GGTAGGGTAGGGTAGGGTAGGGACTAGGGTAGATGCTCTGCTCGCAAACTTGATCACGTGACTGAACTATGACAA GCTGCAAAGCTCGAGATGGGTTCCAAGAACCATCAACCTCGGAAGCCTCTTGGGCACGATGCCTCCCCGGCCCCT GCCCATAACGGCGCTTGCATTGCGGGTCGCATCGAACAGAGCTTGCGCGACGTCTACGATAAGCTGCCTGGCGGG CATCGCGCTCCAGCAGCCACGGCATGCTTCGATCCTCGCCAGCCTGGCCAACAACAAGGGGGCTGTCAAAGAACG GAGGAGGGTCGGGCGAGGGCCGTCGTCTGGTCGTGGCAAGACTTCGGGGAGAGGTCACAAGGGTCAGGGTCAGCA TGGGAAGGTGAAGCCTTGGTTTCAAGGTGGACAGACGCCGTTGATTGTGAGGCATGGACGAATGGGATTTGAGAA TAAGTGAGGACCAGGACTGCCCCCCCCCTTTTTTTTATTTTTTGGAAACATTATATATATGTTATCCTCTTTGGA CAACTGACGGACGTGATGCAGACGAGCGCTCAAGATGTCGGAGGTCAACCTCGATAGGCTGCAGGACTGGATCGA CAATGGACGGATAGACGCGAGCAAGCCCATTACGCCCAAGGAGATGATCCTCAGCAAGCTTTCGGGCAGCATCAA GGACGGCATCAAGATTCTCTCCCGCGGCGTAACCAAACTCCGGCAACCCATCAAGATAACGGCATCGCGAGCCTC GGCGGGCGCCATCGCAGCCATCGAGGCAGCGGGCGGGAGCATCATCACGCGCTACTACACCAAGACGGCGCTACG GCGTCTTGTGCGAGGCGAGTCGGTGCACAGCGACGAGCCGCTTCCTCGGGGAGAGGAGTTCGTCGAGGGGATGGT GGCCCGGGCGCGCGAGGCGGGGTTCCCGTACCGGTTGCCGGACGCGACGAGCAGGAGGGATATCGAGTATTATCG CGATGCGGCGCATAGGGGGTATCTGAGTGGGATGCTGAAGAAGGGGGAGTCGCCGAGTCTGTATTGGAAGGTTCC CGAGGAGGGGAGGGAGAAGAAGAGGAAGAGGAAGAAGGGGGTTGTGAAGGTTCAGGAGAAGAAGGTGGCTGTTAC TACGATGTGGTGA |