© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01685 |
| Gene name | |
| Location | scaffold_02:148135..148462 |
| Strand | + |
| Gene length (bp) | 327 |
| Transcript length (bp) | 267 |
| Coding sequence length (bp) | 267 |
| Protein length (aa) | 89 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 49 | 71 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 185.38 | 77.32 | 293.44 |
| Alive | In ants, during behavior modification | 132.00 | 46.96 | 217.04 |
| Dead | In ants, recently dead | 153.84 | 59.51 | 248.18 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.210123 | no |
| Alive | Dead | 0.561170 | no |
| Dead | Fungus | 0.522819 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01685 MAVLDAFSSFFASLSDALSSLVQAIYGLISGLFQSVAGVIGSGLRMLGGAGQFVLANSLALVIGAAVTLAFIKYT TQGRRLASGVKRN* |
| Coding | >Ophcf2|01685 ATGGCCGTCCTCGACGCATTCTCCAGCTTCTTCGCCTCCCTCTCCGATGCCTTGTCCTCCTTGGTTCAAGCCATC TACGGCCTCATCTCGGGACTCTTCCAGTCGGTAGCCGGCGTCATTGGTTCAGGGTTGAGGATGCTGGGAGGTGCC GGCCAGTTTGTACTCGCAAACTCCCTTGCCCTCGTCATCGGTGCTGCCGTCACACTGGCTTTCATCAAGTACACG ACTCAAGGTCGACGACTGGCTTCGGGCGTCAAGAGGAATTAG |
| Transcript | >Ophcf2|01685 ATGGCCGTCCTCGACGCATTCTCCAGCTTCTTCGCCTCCCTCTCCGATGCCTTGTCCTCCTTGGTTCAAGCCATC TACGGCCTCATCTCGGGACTCTTCCAGTCGGTAGCCGGCGTCATTGGTTCAGGGTTGAGGATGCTGGGAGGTGCC GGCCAGTTTGTACTCGCAAACTCCCTTGCCCTCGTCATCGGTGCTGCCGTCACACTGGCTTTCATCAAGTACACG ACTCAAGGTCGACGACTGGCTTCGGGCGTCAAGAGGAATTAG |
| Gene | >Ophcf2|01685 ATGGCCGTCCTCGACGCATTCTCCAGCTTCTTCGCCTCCCTCTCCGATGCCTTGTCCTCCTTGGTTCAAGCCATC TACGGCCTCATCTCGGGACTCTTCCAGTCGGTAGCCGGCGTCATTGGTTCAGGGTTGAGGATGCTGGGAGGTGCC GGCCAGTTTGTACTCGGTAAGCTTCAAACGTTACTCCGTGCGACGGACTTTATGCTGATGGTTGTTGTTTCTCAA GCAAACTCCCTTGCCCTCGTCATCGGTGCTGCCGTCACACTGGCTTTCATCAAGTACACGACTCAAGGTCGACGA CTGGCTTCGGGCGTCAAGAGGAATTAG |