© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|01673 |
| Gene name | |
| Location | scaffold_02:123005..124713 |
| Strand | + |
| Gene length (bp) | 1708 |
| Transcript length (bp) | 1596 |
| Coding sequence length (bp) | 1596 |
| Protein length (aa) | 532 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 4.4E-65 | 25 | 470 |
| PF00324 | AA_permease | Amino acid permease | 3.6E-32 | 39 | 474 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 28 | 50 | 22 |
| 2 | 60 | 93 | 33 |
| 3 | 113 | 135 | 22 |
| 4 | 150 | 169 | 19 |
| 5 | 176 | 198 | 22 |
| 6 | 225 | 247 | 22 |
| 7 | 260 | 282 | 22 |
| 8 | 309 | 331 | 22 |
| 9 | 364 | 386 | 22 |
| 10 | 390 | 412 | 22 |
| 11 | 425 | 447 | 22 |
| 12 | 462 | 481 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01673 MQDSRLSADQALANLGYRAELPRTFSMLSILGLSFAIMAVPFGLSTTLYITLTNGQSVAILYGWILVSLVSLCIA ASLAEICAVFPTAGGVYYWSATLSPRAWAPLVSFVDGWLTLVGNWTVTLSINFSGAQLILSAVTIFNPDFVANQW QTVLCFWALMLFCALVNAFGSRHLGLVNSLCLYWTAAAVVIILVTLLATSRHRRDAAFVFAHYDASASGWPSGWS FFVGLLQPAYTLTGYGMVASMCEEVQDPQHQVPRAIVLSVLVAGLTGIVYLVPLLFVLPDVKMLLQVANSQPIGL LFKTVTGSAAAGFGLLFLILGILLFAGIGALTAASRCTYAFARDGAIPGHRLWSRVNKRLDMPLWALALSTLVDC LLGCIYFGSSAAFNSFTGVATICLSTSYGVPVLVSLVRRRKHVRDSPYSLGRFGPLINAISLVWIAFAVVIFCMP VSLPVDASTMNYASVVFAAFAAIAVAWYFAYARRNFTGPPVIKADLLDRGVTVGKTLRGAVSNGAVSVSQDSEQT SQKRKS* |
| Coding | >Ophcf2|01673 ATGCAAGACTCTCGCCTCTCAGCAGACCAAGCCCTCGCAAACCTAGGCTACAGAGCCGAACTCCCCCGCACCTTC AGCATGCTCTCCATCCTAGGCCTCTCCTTCGCCATCATGGCCGTCCCCTTCGGCCTCTCCACGACCCTCTACATC ACCCTCACAAACGGCCAATCCGTAGCCATCCTGTACGGCTGGATCCTCGTCTCCCTCGTCTCCCTCTGCATCGCC GCCTCCCTCGCCGAAATCTGCGCCGTCTTCCCTACCGCCGGGGGCGTCTACTACTGGTCCGCGACTCTGAGTCCC CGCGCCTGGGCTCCCCTCGTCAGCTTCGTCGACGGATGGCTCACCCTGGTTGGCAACTGGACCGTTACCCTCTCC ATCAACTTCTCGGGAGCCCAGCTCATACTCAGCGCCGTCACCATCTTCAACCCCGACTTCGTCGCCAATCAGTGG CAGACCGTCCTCTGCTTCTGGGCTCTGATGCTCTTCTGCGCCCTCGTCAACGCCTTCGGCTCGAGACATCTCGGC CTCGTCAATAGCCTCTGTCTCTACTGGACCGCTGCTGCCGTCGTCATCATCCTCGTCACCCTACTGGCCACGTCT CGTCACCGCCGTGACGCCGCCTTCGTCTTCGCCCACTACGATGCCTCTGCCAGCGGTTGGCCCAGCGGCTGGTCC TTTTTCGTCGGGCTGCTTCAGCCCGCCTACACCCTCACCGGCTACGGCATGGTGGCCTCCATGTGTGAAGAAGTT CAAGACCCCCAGCATCAAGTCCCCCGAGCCATCGTCCTCTCCGTCCTCGTCGCCGGCCTCACGGGCATCGTCTAC CTCGTCCCCCTCCTCTTCGTCCTCCCCGACGTCAAGATGCTCCTCCAGGTGGCGAACTCTCAACCCATCGGCCTC CTCTTCAAGACCGTCACCGGCTCGGCAGCCGCCGGCTTCGGCCTCCTCTTCCTCATCCTCGGCATCCTCCTCTTC GCCGGTATCGGTGCCCTCACGGCCGCCTCTCGCTGCACCTACGCCTTTGCCCGGGACGGTGCCATCCCCGGTCAT CGCCTCTGGAGTCGCGTCAACAAGAGGCTCGATATGCCGCTATGGGCCCTCGCCTTGTCCACCCTCGTCGATTGC CTGCTCGGCTGCATCTATTTCGGCTCCTCGGCCGCCTTCAACTCCTTCACCGGCGTCGCCACCATCTGCCTCTCC ACCTCGTACGGCGTCCCCGTCCTCGTGAGCCTCGTCCGTCGCCGAAAGCACGTCCGAGACTCTCCCTATTCCCTC GGCCGCTTCGGTCCCCTCATCAACGCCATCAGTCTCGTCTGGATCGCCTTTGCCGTCGTCATCTTCTGCATGCCC GTTTCCCTGCCCGTCGACGCCAGCACCATGAACTACGCCTCCGTCGTCTTTGCCGCCTTTGCCGCCATCGCCGTC GCCTGGTACTTTGCCTATGCGCGCCGCAACTTCACCGGCCCGCCCGTCATCAAGGCCGACCTCCTCGACCGTGGC GTCACCGTCGGCAAGACGCTCAGGGGTGCTGTCAGCAACGGCGCCGTCTCCGTCTCCCAGGATTCAGAGCAGACG TCGCAAAAAAGAAAGTCGTAG |
| Transcript | >Ophcf2|01673 ATGCAAGACTCTCGCCTCTCAGCAGACCAAGCCCTCGCAAACCTAGGCTACAGAGCCGAACTCCCCCGCACCTTC AGCATGCTCTCCATCCTAGGCCTCTCCTTCGCCATCATGGCCGTCCCCTTCGGCCTCTCCACGACCCTCTACATC ACCCTCACAAACGGCCAATCCGTAGCCATCCTGTACGGCTGGATCCTCGTCTCCCTCGTCTCCCTCTGCATCGCC GCCTCCCTCGCCGAAATCTGCGCCGTCTTCCCTACCGCCGGGGGCGTCTACTACTGGTCCGCGACTCTGAGTCCC CGCGCCTGGGCTCCCCTCGTCAGCTTCGTCGACGGATGGCTCACCCTGGTTGGCAACTGGACCGTTACCCTCTCC ATCAACTTCTCGGGAGCCCAGCTCATACTCAGCGCCGTCACCATCTTCAACCCCGACTTCGTCGCCAATCAGTGG CAGACCGTCCTCTGCTTCTGGGCTCTGATGCTCTTCTGCGCCCTCGTCAACGCCTTCGGCTCGAGACATCTCGGC CTCGTCAATAGCCTCTGTCTCTACTGGACCGCTGCTGCCGTCGTCATCATCCTCGTCACCCTACTGGCCACGTCT CGTCACCGCCGTGACGCCGCCTTCGTCTTCGCCCACTACGATGCCTCTGCCAGCGGTTGGCCCAGCGGCTGGTCC TTTTTCGTCGGGCTGCTTCAGCCCGCCTACACCCTCACCGGCTACGGCATGGTGGCCTCCATGTGTGAAGAAGTT CAAGACCCCCAGCATCAAGTCCCCCGAGCCATCGTCCTCTCCGTCCTCGTCGCCGGCCTCACGGGCATCGTCTAC CTCGTCCCCCTCCTCTTCGTCCTCCCCGACGTCAAGATGCTCCTCCAGGTGGCGAACTCTCAACCCATCGGCCTC CTCTTCAAGACCGTCACCGGCTCGGCAGCCGCCGGCTTCGGCCTCCTCTTCCTCATCCTCGGCATCCTCCTCTTC GCCGGTATCGGTGCCCTCACGGCCGCCTCTCGCTGCACCTACGCCTTTGCCCGGGACGGTGCCATCCCCGGTCAT CGCCTCTGGAGTCGCGTCAACAAGAGGCTCGATATGCCGCTATGGGCCCTCGCCTTGTCCACCCTCGTCGATTGC CTGCTCGGCTGCATCTATTTCGGCTCCTCGGCCGCCTTCAACTCCTTCACCGGCGTCGCCACCATCTGCCTCTCC ACCTCGTACGGCGTCCCCGTCCTCGTGAGCCTCGTCCGTCGCCGAAAGCACGTCCGAGACTCTCCCTATTCCCTC GGCCGCTTCGGTCCCCTCATCAACGCCATCAGTCTCGTCTGGATCGCCTTTGCCGTCGTCATCTTCTGCATGCCC GTTTCCCTGCCCGTCGACGCCAGCACCATGAACTACGCCTCCGTCGTCTTTGCCGCCTTTGCCGCCATCGCCGTC GCCTGGTACTTTGCCTATGCGCGCCGCAACTTCACCGGCCCGCCCGTCATCAAGGCCGACCTCCTCGACCGTGGC GTCACCGTCGGCAAGACGCTCAGGGGTGCTGTCAGCAACGGCGCCGTCTCCGTCTCCCAGGATTCAGAGCAGACG TCGCAAAAAAGAAAGTCGTAG |
| Gene | >Ophcf2|01673 ATGCAAGACTCTCGCCTCTCAGCAGACCAAGCCCTCGCAAACCTAGGCTACAGAGCCGAACTCCCCCGCACCTTC AGCATGCTCTCCATCCTAGGCCTCTCCTTCGCCATCATGGCCGTCCCCTTCGGCCTCTCCACGACCCTCTACATC ACCCTCACAAACGGCCAATCCGTAGCCATCCTGTACGGCTGGATCCTCGTCTCCCTCGTCTCCCTCTGCATCGCC GCCTCCCTCGCCGAAATCTGCGCCGTCTTCCCTACCGCCGGGGGCGTCTACTACTGGTCCGCGACTCTGAGTCCC CGCGCCTGGGCTCCCCTCGTCAGCTTCGTCGACGGATGGCTCACCCTGGTTGGCAACTGGACCGTTACCCTCTCC ATCAACTTCTCGGGAGCCCAGCTCATACTCAGCGCCGTCACCATCTTCAACCCCGACTTCGTCGCCAATCAGTGG CAGACCGTCCTCTGCTTCTGGGCTCTGATGCTCTTCTGCGCCCTCGTCAACGCCTTCGGCTCGAGACATCTCGGC CTCGTCAATAGCCTCTGTCTCTACTGGACCGCTGCTGCCGTCGTCATCATCCTCGTCACCCTACTGGCCACGTCT CGTCACCGCCGTGACGCCGCCTTCGTCTTCGCCCACTACGATGCCTCTGCCAGCGGTTGGCCCAGCGGCTGGTCC TTTTTCGTCGGGCTGCTTCAGCGTGAGCATCTCGTCGTCCGACTCTTTTCTTTTCTGACTGGGCAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAGAACGAGGCTGACTGATACTTCCTTCACCTCTCCAGCCGCCTACACCCTCAC CGGCTACGGCATGGTGGCCTCCATGTGTGAAGAAGTTCAAGACCCCCAGCATCAAGTCCCCCGAGCCATCGTCCT CTCCGTCCTCGTCGCCGGCCTCACGGGCATCGTCTACCTCGTCCCCCTCCTCTTCGTCCTCCCCGACGTCAAGAT GCTCCTCCAGGTGGCGAACTCTCAACCCATCGGCCTCCTCTTCAAGACCGTCACCGGCTCGGCAGCCGCCGGCTT CGGCCTCCTCTTCCTCATCCTCGGCATCCTCCTCTTCGCCGGTATCGGTGCCCTCACGGCCGCCTCTCGCTGCAC CTACGCCTTTGCCCGGGACGGTGCCATCCCCGGTCATCGCCTCTGGAGTCGCGTCAACAAGAGGCTCGATATGCC GCTATGGGCCCTCGCCTTGTCCACCCTCGTCGATTGCCTGCTCGGCTGCATCTATTTCGGCTCCTCGGCCGCCTT CAACTCCTTCACCGGCGTCGCCACCATCTGCCTCTCCACCTCGTACGGCGTCCCCGTCCTCGTGAGCCTCGTCCG TCGCCGAAAGCACGTCCGAGACTCTCCCTATTCCCTCGGCCGCTTCGGTCCCCTCATCAACGCCATCAGTCTCGT CTGGATCGCCTTTGCCGTCGTCATCTTCTGCATGCCCGTTTCCCTGCCCGTCGACGCCAGCACCATGAACTACGC CTCCGTCGTCTTTGCCGCCTTTGCCGCCATCGCCGTCGCCTGGTACTTTGCCTATGCGCGCCGCAACTTCACCGG CCCGCCCGTCATCAAGGCCGACCTCCTCGACCGTGGCGTCACCGTCGGCAAGACGCTCAGGGGTGCTGTCAGCAA CGGCGCCGTCTCCGTCTCCCAGGATTCAGAGCAGACGTCGCAAAAAAGAAAGTCGTAG |