© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|01658 |
| Gene name | |
| Location | scaffold_02:80649..81717 |
| Strand | + |
| Gene length (bp) | 1068 |
| Transcript length (bp) | 924 |
| Coding sequence length (bp) | 924 |
| Protein length (aa) | 308 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07859 | Abhydrolase_3 | alpha/beta hydrolase fold | 2.5E-57 | 63 | 275 |
| PF20434 | BD-FAE | BD-FAE | 1.5E-13 | 60 | 155 |
| PF07224 | Chlorophyllase | Chlorophyllase | 1.2E-04 | 36 | 164 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0015996 | chlorophyll catabolic process | Yes |
| GO:0016787 | hydrolase activity | Yes |
| GO:0047746 | chlorophyllase activity | Yes |
| GO:0009056 | catabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:1901565 | organonitrogen compound catabolic process | No |
| GO:0046700 | heterocycle catabolic process | No |
| GO:0006787 | porphyrin-containing compound catabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0033013 | tetrapyrrole metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0006778 | porphyrin-containing compound metabolic process | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0044248 | cellular catabolic process | No |
| GO:0052689 | carboxylic ester hydrolase activity | No |
| GO:0015994 | chlorophyll metabolic process | No |
| GO:1901361 | organic cyclic compound catabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0044270 | cellular nitrogen compound catabolic process | No |
| GO:0042440 | pigment metabolic process | No |
| GO:0033015 | tetrapyrrole catabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0046149 | pigment catabolic process | No |
| GO:0019439 | aromatic compound catabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.6405 | 0.5148 | 0.0556 | 0.0162 | 0.1192 | 0.116 | 0.1387 | 0.225 | 0.2172 | 0.1532 |
| Orthofinder run ID | 4 |
| Orthogroup | 3034 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01658 MHLVPLSQARSIGGKFVPGAGPEQPVGRTVEASVPRTVSTGPPIPVRCLVPEGEPPEGGWPALLYFHGGGWVFGD LDTENVGATHLCSRSACVVACVDYRLALKTLPAAVDDAWEASLWLSTEAQTLLPINTTRLAVGGSSAGGNLAAVI AQRASATPSSNLVFQLQLLLVPVIDNTASTATSSTYAANEHAPGLSVAKMLWYRDHYLPRVEDWAHPEASPLLWE GDWASLPPAVVVLAGVDPLRDEGERFASRLEGAGVRVELRVFEGQPHPFISMDGVLEDGRRGLIWASDAVRDVLY PSGEEGE* |
| Coding | >Ophcf2|01658 ATGCACCTCGTCCCCCTCTCCCAAGCCCGGTCCATCGGCGGCAAATTCGTCCCCGGCGCCGGACCCGAGCAGCCC GTCGGCCGCACCGTCGAAGCCTCCGTCCCGCGAACCGTCTCTACCGGCCCGCCGATCCCCGTCCGCTGCCTCGTG CCCGAAGGCGAGCCTCCCGAGGGCGGATGGCCGGCGCTGCTGTACTTTCACGGCGGTGGTTGGGTTTTCGGCGAT CTGGATACGGAGAATGTCGGGGCTACTCATTTGTGTTCGAGGTCGGCCTGCGTCGTTGCATGTGTCGATTACCGC CTCGCCCTGAAGACCCTTCCCGCCGCCGTAGACGACGCCTGGGAAGCATCCCTCTGGCTCTCGACAGAGGCCCAA ACCCTCCTCCCCATAAACACCACCCGCCTGGCCGTAGGCGGCTCATCCGCAGGCGGCAACCTCGCCGCCGTCATC GCCCAACGCGCCTCGGCGACCCCGTCCTCCAACCTCGTCTTCCAGCTACAGCTCCTCCTCGTCCCCGTAATCGAC AACACGGCCTCGACCGCCACCAGCTCGACCTACGCCGCCAACGAGCACGCTCCGGGCCTCAGCGTCGCAAAGATG CTATGGTACCGCGACCATTACCTCCCCCGTGTCGAGGACTGGGCTCATCCCGAGGCCAGTCCCTTGCTTTGGGAG GGCGATTGGGCTTCATTGCCGCCTGCCGTCGTCGTCCTCGCCGGCGTTGATCCTCTGCGAGATGAGGGGGAGCGA TTCGCTTCTCGTCTCGAGGGGGCGGGTGTGCGTGTCGAGCTCAGGGTGTTTGAGGGCCAGCCACATCCGTTCATT TCCATGGATGGCGTGCTAGAGGATGGCCGTCGGGGCCTGATCTGGGCCTCTGATGCCGTGAGGGATGTCCTATAC CCATCGGGCGAAGAAGGAGAGTGA |
| Transcript | >Ophcf2|01658 ATGCACCTCGTCCCCCTCTCCCAAGCCCGGTCCATCGGCGGCAAATTCGTCCCCGGCGCCGGACCCGAGCAGCCC GTCGGCCGCACCGTCGAAGCCTCCGTCCCGCGAACCGTCTCTACCGGCCCGCCGATCCCCGTCCGCTGCCTCGTG CCCGAAGGCGAGCCTCCCGAGGGCGGATGGCCGGCGCTGCTGTACTTTCACGGCGGTGGTTGGGTTTTCGGCGAT CTGGATACGGAGAATGTCGGGGCTACTCATTTGTGTTCGAGGTCGGCCTGCGTCGTTGCATGTGTCGATTACCGC CTCGCCCTGAAGACCCTTCCCGCCGCCGTAGACGACGCCTGGGAAGCATCCCTCTGGCTCTCGACAGAGGCCCAA ACCCTCCTCCCCATAAACACCACCCGCCTGGCCGTAGGCGGCTCATCCGCAGGCGGCAACCTCGCCGCCGTCATC GCCCAACGCGCCTCGGCGACCCCGTCCTCCAACCTCGTCTTCCAGCTACAGCTCCTCCTCGTCCCCGTAATCGAC AACACGGCCTCGACCGCCACCAGCTCGACCTACGCCGCCAACGAGCACGCTCCGGGCCTCAGCGTCGCAAAGATG CTATGGTACCGCGACCATTACCTCCCCCGTGTCGAGGACTGGGCTCATCCCGAGGCCAGTCCCTTGCTTTGGGAG GGCGATTGGGCTTCATTGCCGCCTGCCGTCGTCGTCCTCGCCGGCGTTGATCCTCTGCGAGATGAGGGGGAGCGA TTCGCTTCTCGTCTCGAGGGGGCGGGTGTGCGTGTCGAGCTCAGGGTGTTTGAGGGCCAGCCACATCCGTTCATT TCCATGGATGGCGTGCTAGAGGATGGCCGTCGGGGCCTGATCTGGGCCTCTGATGCCGTGAGGGATGTCCTATAC CCATCGGGCGAAGAAGGAGAGTGA |
| Gene | >Ophcf2|01658 ATGCACCTCGTCCCCCTCTCCCAAGCCCGGTCCATCGGCGGCAAATTCGTCCCCGGCGCCGGACCCGAGCAGCCC GTCGGCCGCACCGTCGAAGCCTCCGTCCCGCGAACCGTCTCTACCGGCCCGCCGATCCCCGTCCGCTGCCTCGTG CCCGAAGGCGAGCCTCCCGAGGGCGGATGGCCGGCGCTGCTGTACTTTCACGGCGGTGGTTGGGTTTTCGGCGAT CTGGATACGGAGAATGTCGGGGCTACTCATTTGTGTTCGAGGTCGGCCTGCGTCGTTGCATGTGTCGATTACCGG TGAGCTTCTCTTCTTCCTCTCTACCCTGTATCTTCTTCCTCTTCACGTCATCTCTTCCTCACTTATACCACTCTT CCCTCACCTACATAACACCCAACCTACGTACATACACAGTTGCCCTCTCACTAAACCCCCCCTTTCAGCCTCGCC CTGAAGACCCTTCCCGCCGCCGTAGACGACGCCTGGGAAGCATCCCTCTGGCTCTCGACAGAGGCCCAAACCCTC CTCCCCATAAACACCACCCGCCTGGCCGTAGGCGGCTCATCCGCAGGCGGCAACCTCGCCGCCGTCATCGCCCAA CGCGCCTCGGCGACCCCGTCCTCCAACCTCGTCTTCCAGCTACAGCTCCTCCTCGTCCCCGTAATCGACAACACG GCCTCGACCGCCACCAGCTCGACCTACGCCGCCAACGAGCACGCTCCGGGCCTCAGCGTCGCAAAGATGCTATGG TACCGCGACCATTACCTCCCCCGTGTCGAGGACTGGGCTCATCCCGAGGCCAGTCCCTTGCTTTGGGAGGGCGAT TGGGCTTCATTGCCGCCTGCCGTCGTCGTCCTCGCCGGCGTTGATCCTCTGCGAGATGAGGGGGAGCGATTCGCT TCTCGTCTCGAGGGGGCGGGTGTGCGTGTCGAGCTCAGGGTGTTTGAGGGCCAGCCACATCCGTTCATTTCCATG GATGGCGTGCTAGAGGATGGCCGTCGGGGCCTGATCTGGGCCTCTGATGCCGTGAGGGATGTCCTATACCCATCG GGCGAAGAAGGAGAGTGA |