© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01613 |
| Gene name | |
| Location | scaffold_01:5524530..5526288 |
| Strand | - |
| Gene length (bp) | 1758 |
| Transcript length (bp) | 1188 |
| Coding sequence length (bp) | 1188 |
| Protein length (aa) | 396 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 6.1E-20 | 20 | 356 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 31 | 19 |
| 2 | 51 | 70 | 19 |
| 3 | 77 | 99 | 22 |
| 4 | 103 | 121 | 18 |
| 5 | 142 | 164 | 22 |
| 6 | 179 | 196 | 17 |
| 7 | 240 | 262 | 22 |
| 8 | 277 | 299 | 22 |
| 9 | 306 | 325 | 19 |
| 10 | 330 | 352 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 1.26 | 0.09 | 2.43 |
| Alive | In ants, during behavior modification | 15.12 | 6.11 | 24.12 |
| Dead | In ants, recently dead | 7.83 | 2.56 | 13.10 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.006330 | yes |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01613 MAQPRVQPKWLFPVCLVTSLFFLWGFSYGLLDTLNKHFQDTLGIGKSRSAGLQAAYFGAYPLASLGHAAWTLQRF GYRVTFVWGLCLFGLGAVLAIPAIKSRSFGGFCACIFVIGSGLGSLETAANPFMGVCGPARQSEIRLNVAQAFSG VGSVIAPVIGSFAFFRLDAEGALRNVQWIYLAVALLVFVLAAIFFVSDIPEPREEDADLLGEKDREAEEGRDQGH DDGGRSLTSSQRWRLFHAASAQFCCTGAQIAIAGYFINYVMETRPLTRPATASQLLAGAQGAFALGRFVGALLMR WIRPRLVLFVFTTLSTALVMPSIWVRGDAAPAIICLAMFFESVCFPTIVALGIRGLGRHSRRGSGAVVDGEVEGE AVGARREEGVLEMGRRWYRG* |
| Coding | >Ophcf2|01613 ATGGCTCAACCTCGAGTACAACCAAAGTGGCTGTTTCCCGTCTGCCTCGTCACCAGCCTCTTCTTCCTCTGGGGC TTCTCGTACGGCTTGCTGGACACGCTCAACAAGCATTTCCAGGACACGCTGGGCATCGGCAAATCGCGATCTGCC GGCCTGCAAGCCGCGTACTTTGGAGCATACCCCCTGGCCTCGCTAGGCCACGCAGCCTGGACCCTGCAGCGGTTC GGATATCGCGTTACCTTTGTCTGGGGCCTCTGCCTGTTCGGCCTTGGAGCCGTCTTGGCCATTCCAGCCATCAAG AGTCGCAGTTTTGGCGGCTTTTGCGCCTGTATCTTCGTCATCGGCAGCGGGCTCGGCTCCCTCGAGACTGCGGCG AACCCTTTCATGGGCGTCTGCGGACCCGCGAGGCAGTCCGAGATACGGCTCAACGTAGCGCAGGCCTTTAGCGGC GTCGGATCCGTCATCGCCCCCGTGATAGGCTCCTTTGCCTTCTTCCGTCTCGACGCTGAGGGCGCGCTGCGCAAC GTCCAGTGGATCTACCTCGCTGTCGCTTTGCTCGTCTTCGTCCTGGCCGCCATCTTCTTCGTCTCTGATATTCCG GAGCCGCGGGAGGAGGATGCCGACTTGTTGGGAGAGAAGGATAGGGAGGCGGAGGAGGGGAGGGATCAGGGTCAT GATGATGGGGGTCGATCCCTGACTTCGTCTCAGCGGTGGCGTCTTTTTCATGCTGCTTCGGCGCAGTTTTGCTGT ACGGGTGCACAGATTGCTATTGCTGGATACTTCATCAACTACGTGATGGAGACTCGGCCCCTGACTCGACCCGCG ACGGCATCACAGCTTCTGGCCGGTGCACAGGGGGCTTTCGCGCTGGGCCGCTTCGTCGGCGCACTGCTGATGCGC TGGATCCGACCGCGTCTCGTACTGTTCGTCTTCACCACGCTGAGCACCGCGCTGGTGATGCCCTCCATCTGGGTA AGAGGCGACGCCGCCCCGGCCATCATCTGTCTAGCCATGTTCTTCGAGTCGGTCTGCTTCCCGACCATCGTTGCG CTGGGGATCCGCGGCCTGGGGCGTCATAGCCGAAGGGGGTCTGGGGCTGTTGTTGATGGGGAGGTCGAGGGAGAG GCCGTTGGGGCGAGGAGGGAGGAGGGCGTGTTGGAGATGGGGAGGCGTTGGTATCGGGGGTGA |
| Transcript | >Ophcf2|01613 ATGGCTCAACCTCGAGTACAACCAAAGTGGCTGTTTCCCGTCTGCCTCGTCACCAGCCTCTTCTTCCTCTGGGGC TTCTCGTACGGCTTGCTGGACACGCTCAACAAGCATTTCCAGGACACGCTGGGCATCGGCAAATCGCGATCTGCC GGCCTGCAAGCCGCGTACTTTGGAGCATACCCCCTGGCCTCGCTAGGCCACGCAGCCTGGACCCTGCAGCGGTTC GGATATCGCGTTACCTTTGTCTGGGGCCTCTGCCTGTTCGGCCTTGGAGCCGTCTTGGCCATTCCAGCCATCAAG AGTCGCAGTTTTGGCGGCTTTTGCGCCTGTATCTTCGTCATCGGCAGCGGGCTCGGCTCCCTCGAGACTGCGGCG AACCCTTTCATGGGCGTCTGCGGACCCGCGAGGCAGTCCGAGATACGGCTCAACGTAGCGCAGGCCTTTAGCGGC GTCGGATCCGTCATCGCCCCCGTGATAGGCTCCTTTGCCTTCTTCCGTCTCGACGCTGAGGGCGCGCTGCGCAAC GTCCAGTGGATCTACCTCGCTGTCGCTTTGCTCGTCTTCGTCCTGGCCGCCATCTTCTTCGTCTCTGATATTCCG GAGCCGCGGGAGGAGGATGCCGACTTGTTGGGAGAGAAGGATAGGGAGGCGGAGGAGGGGAGGGATCAGGGTCAT GATGATGGGGGTCGATCCCTGACTTCGTCTCAGCGGTGGCGTCTTTTTCATGCTGCTTCGGCGCAGTTTTGCTGT ACGGGTGCACAGATTGCTATTGCTGGATACTTCATCAACTACGTGATGGAGACTCGGCCCCTGACTCGACCCGCG ACGGCATCACAGCTTCTGGCCGGTGCACAGGGGGCTTTCGCGCTGGGCCGCTTCGTCGGCGCACTGCTGATGCGC TGGATCCGACCGCGTCTCGTACTGTTCGTCTTCACCACGCTGAGCACCGCGCTGGTGATGCCCTCCATCTGGGTA AGAGGCGACGCCGCCCCGGCCATCATCTGTCTAGCCATGTTCTTCGAGTCGGTCTGCTTCCCGACCATCGTTGCG CTGGGGATCCGCGGCCTGGGGCGTCATAGCCGAAGGGGGTCTGGGGCTGTTGTTGATGGGGAGGTCGAGGGAGAG GCCGTTGGGGCGAGGAGGGAGGAGGGCGTGTTGGAGATGGGGAGGCGTTGGTATCGGGGGTGA |
| Gene | >Ophcf2|01613 ATGGCTCAACCTCGAGTACAACCAAAGTGGCTGTTTCCCGTCTGCCTCGTCACCAGCCTCTTCTTCCTCTGGGGC TTCTCGTACGGCTTGCTGGACACGCTCAACAAGCATTTCCAGGACACGCTGGGCATCGGCAAATCGCGATCTGCC GGCCTGCAAGCCGCGTACTTTGGGTGCGTCCTGCTCGATATATATATATACATACATAACTCCGTTGCATGCCAT GGAATGTCCGGATCCTGACACAGGCCACGTCAAGAGCATACCCCCTGGCCTCGCTAGGCCACGCAGCCTGGACCC TGCAGCGGTTCGGATATCGCGTTACCTTTGTCTGGGGCCTCTGCCTGTTCGGTATGTTATACACACACACACACA CATGCACACATGCACACATGCACACATACACACATACACACATACACACAAACACACATACACACATACATGCTT TCGCCTGTTGTTCTCTTTGCCGTTGTCTTCTTTCTTGTTGTATGTATGTACATACATACATACATACATACATAC ATACATGGCCTTGGCTCATGCGATGACTGACCCGCTCCAAGGCCTTGGAGCCGTCTTGGCCATTCCAGCCATCAA GAGTCGCAGTTTTGGCGGCTTTTGCGCCTGTATCTTCGTCATCGGCAGCGGGCTCGGCTCCCTCGAGACTGCGGC GAACCCTTTCATGGGCGGTATGTGCGTTCCCCTGACTATCCTCACGGGCAGTGACGCTGAAGAACTGGGTCAGTC TGCGGACCCGCGAGGCAGTCCGAGATACGGCTCAACGTAGCGCAGGCCTTTAGCGGCGTCGGATCCGTCATCGCC CCCGTGATAGGCTCCTTTGCCTTCTTCCGTCTCGACGCTGAGGGCGCGCTGCGCAACGTCCAGTGGATCTACCTC GCTGTCGCTTTGCTCGTCTTCGTCCTGGCCGCCATCTTCTTCGTCTCTGATATTCCGGAGCCGCGGGAGGAGGAT GCCGACTTGTTGGGAGAGAAGGATAGGGAGGCGGAGGAGGGGAGGGATCAGGGTCATGATGATGGGGGTCGATCC CTGACTTCGTCTCAGCGGTGGCGTCTTTTTCATGCTGCTTCGGCGCAGTTTTGCTGTACGGGTGCACAGATTGCT ATTGCTGGGTAAGAAGATGACATGCCGCTACATCGTCCATTGACTGACGGACGAGCATCACAGATACTTCATCAA CTACGTGATGGAGACTCGGCCCCTGACTCGACCCGCGACGGCATCACAGCTTCTGGCCGGTGCACAGGGGGCTTT CGCGCTGGGCCGCTTCGTCGGCGCACTGCTGATGCGCTGGATCCGACCGCGTCTCGTACTGTTCGTCTTCACCAC GCTGAGCACCGCGCTGGTGATGCCCTCCATCTGGGTAAGAGGCGACGCCGCCCCGGCCATCATCTGTCTAGCCAT GTTCTTCGAGTCGGTCTGCTTCCCGACCATCGTTGCGCTGGGGATCCGCGGCCTGGGGCGTCATAGCCGAAGGGG GTCTGGGTATGTGGTTGGGGGGATCGTGGGTGGTGCGTGCGTGCCTCCGCTTATGGGGGCCGTTGCGGATGGTAG GGGACGGCGGTGGGGATGGCGGTGCCTTGTGCCTTTCTGGTGGTTGGGTGGACGTATGCCGTTGCTGTGAATGTT GTGCCTGGGTATAGGGCTGTTGTTGATGGGGAGGTCGAGGGAGAGGCCGTTGGGGCGAGGAGGGAGGAGGGCGTG TTGGAGATGGGGAGGCGTTGGTATCGGGGGTGA |