Protein ID | Ophcf2|01608 |
Gene name | |
Location | scaffold_01:5476793..5477885 |
Strand | + |
Gene length (bp) | 1092 |
Transcript length (bp) | 1092 |
Coding sequence length (bp) | 1092 |
Protein length (aa) | 364 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04488 | Gly_transf_sug | Glycosyltransferase sugar-binding region containing DXD motif | 6.0E-08 | 161 | 204 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 17 | 0.5 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 5 | 27 | 22 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
Fungus | Fungus in pure culture | 40.16 | 20.60 | 59.72 |
Alive | In ants, during behavior modification | 48.92 | 25.62 | 72.22 |
Dead | In ants, recently dead | 60.39 | 33.48 | 87.30 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
Alive | Fungus | 0.383472 | no |
Alive | Dead | 0.241555 | no |
Dead | Fungus | 0.047545 | yes |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|01608 MVSLFRICLLIALAFSIYHVFPPLILFGEWLSQNHPFSNQRAVEQDFTPTPKELACLHGLPLPGTLATTTEQTPI PNVVNFVFFQQLPSSKPEGDFGFLAYLAVRSAIVSLKPDHVYIHYGFASSPSRFGRVSQAPLGESIIMRNPWIRR LRPHVELKPYTKPFDRSLKHREHLADRVRLEILLQHGGIYMDLDAFALRPFAEALSPSPPHDAILGYEGGNRAGL CNAVIAARPNSSFIHRWLHTYDKADLNAEWNYHSVILPRQLAHNHPDEVCELPPDAFFWPTWTWGDVRWMHEPLS PPDAEFWKGRIQELGGSLFPNQLVYHAWSQMSRNRYLKRLRPDVIRAENTRFNLLMRRFLEDD* |
Coding | >Ophcf2|01608 ATGGTCTCCCTCTTCCGCATCTGCCTCCTCATCGCCCTCGCCTTCTCCATCTACCACGTCTTCCCACCACTCATC CTCTTCGGCGAATGGCTATCACAGAACCATCCCTTCTCCAACCAAAGAGCCGTCGAGCAAGACTTCACCCCGACA CCCAAGGAACTCGCCTGCCTGCACGGCCTGCCTCTTCCCGGAACCCTCGCGACGACCACAGAACAGACGCCGATA CCAAACGTCGTCAACTTCGTCTTCTTCCAGCAGCTCCCTTCCAGCAAGCCAGAGGGAGACTTTGGCTTCCTCGCC TACCTCGCCGTCCGGAGCGCCATAGTCTCCCTGAAGCCCGACCATGTCTACATCCACTACGGCTTTGCCTCCTCG CCTTCGCGCTTCGGTCGTGTCTCTCAGGCGCCGCTCGGCGAGAGCATCATCATGCGCAATCCCTGGATCCGACGA CTGAGGCCGCATGTCGAGCTGAAGCCATACACGAAGCCCTTTGATCGCTCCCTCAAGCATAGAGAGCACCTCGCC GACCGCGTTCGACTCGAGATTTTACTCCAACACGGCGGCATCTACATGGATCTGGACGCCTTTGCCCTCCGGCCT TTTGCAGAAGCGCTCTCGCCCTCGCCGCCTCACGATGCTATCCTCGGTTATGAAGGCGGTAACCGCGCCGGTCTA TGCAACGCCGTCATCGCCGCTCGACCAAACAGCTCCTTTATCCATCGCTGGCTTCACACGTATGACAAGGCCGAC CTCAACGCCGAGTGGAACTACCACAGCGTTATCCTCCCGCGCCAGCTCGCCCACAATCACCCAGACGAAGTCTGC GAGCTGCCTCCCGATGCCTTCTTCTGGCCGACCTGGACATGGGGCGACGTTCGGTGGATGCATGAGCCCCTGAGC CCGCCGGATGCCGAGTTCTGGAAGGGCCGAATACAGGAGTTGGGCGGTAGCTTGTTCCCGAATCAGCTCGTCTAT CATGCCTGGAGCCAGATGAGCAGGAACCGCTATCTGAAACGCCTGAGGCCGGATGTCATCCGTGCGGAAAACACG AGGTTCAATCTGCTTATGAGACGTTTTCTGGAGGATGACTGA |
Transcript | >Ophcf2|01608 ATGGTCTCCCTCTTCCGCATCTGCCTCCTCATCGCCCTCGCCTTCTCCATCTACCACGTCTTCCCACCACTCATC CTCTTCGGCGAATGGCTATCACAGAACCATCCCTTCTCCAACCAAAGAGCCGTCGAGCAAGACTTCACCCCGACA CCCAAGGAACTCGCCTGCCTGCACGGCCTGCCTCTTCCCGGAACCCTCGCGACGACCACAGAACAGACGCCGATA CCAAACGTCGTCAACTTCGTCTTCTTCCAGCAGCTCCCTTCCAGCAAGCCAGAGGGAGACTTTGGCTTCCTCGCC TACCTCGCCGTCCGGAGCGCCATAGTCTCCCTGAAGCCCGACCATGTCTACATCCACTACGGCTTTGCCTCCTCG CCTTCGCGCTTCGGTCGTGTCTCTCAGGCGCCGCTCGGCGAGAGCATCATCATGCGCAATCCCTGGATCCGACGA CTGAGGCCGCATGTCGAGCTGAAGCCATACACGAAGCCCTTTGATCGCTCCCTCAAGCATAGAGAGCACCTCGCC GACCGCGTTCGACTCGAGATTTTACTCCAACACGGCGGCATCTACATGGATCTGGACGCCTTTGCCCTCCGGCCT TTTGCAGAAGCGCTCTCGCCCTCGCCGCCTCACGATGCTATCCTCGGTTATGAAGGCGGTAACCGCGCCGGTCTA TGCAACGCCGTCATCGCCGCTCGACCAAACAGCTCCTTTATCCATCGCTGGCTTCACACGTATGACAAGGCCGAC CTCAACGCCGAGTGGAACTACCACAGCGTTATCCTCCCGCGCCAGCTCGCCCACAATCACCCAGACGAAGTCTGC GAGCTGCCTCCCGATGCCTTCTTCTGGCCGACCTGGACATGGGGCGACGTTCGGTGGATGCATGAGCCCCTGAGC CCGCCGGATGCCGAGTTCTGGAAGGGCCGAATACAGGAGTTGGGCGGTAGCTTGTTCCCGAATCAGCTCGTCTAT CATGCCTGGAGCCAGATGAGCAGGAACCGCTATCTGAAACGCCTGAGGCCGGATGTCATCCGTGCGGAAAACACG AGGTTCAATCTGCTTATGAGACGTTTTCTGGAGGATGACTGA |
Gene | >Ophcf2|01608 ATGGTCTCCCTCTTCCGCATCTGCCTCCTCATCGCCCTCGCCTTCTCCATCTACCACGTCTTCCCACCACTCATC CTCTTCGGCGAATGGCTATCACAGAACCATCCCTTCTCCAACCAAAGAGCCGTCGAGCAAGACTTCACCCCGACA CCCAAGGAACTCGCCTGCCTGCACGGCCTGCCTCTTCCCGGAACCCTCGCGACGACCACAGAACAGACGCCGATA CCAAACGTCGTCAACTTCGTCTTCTTCCAGCAGCTCCCTTCCAGCAAGCCAGAGGGAGACTTTGGCTTCCTCGCC TACCTCGCCGTCCGGAGCGCCATAGTCTCCCTGAAGCCCGACCATGTCTACATCCACTACGGCTTTGCCTCCTCG CCTTCGCGCTTCGGTCGTGTCTCTCAGGCGCCGCTCGGCGAGAGCATCATCATGCGCAATCCCTGGATCCGACGA CTGAGGCCGCATGTCGAGCTGAAGCCATACACGAAGCCCTTTGATCGCTCCCTCAAGCATAGAGAGCACCTCGCC GACCGCGTTCGACTCGAGATTTTACTCCAACACGGCGGCATCTACATGGATCTGGACGCCTTTGCCCTCCGGCCT TTTGCAGAAGCGCTCTCGCCCTCGCCGCCTCACGATGCTATCCTCGGTTATGAAGGCGGTAACCGCGCCGGTCTA TGCAACGCCGTCATCGCCGCTCGACCAAACAGCTCCTTTATCCATCGCTGGCTTCACACGTATGACAAGGCCGAC CTCAACGCCGAGTGGAACTACCACAGCGTTATCCTCCCGCGCCAGCTCGCCCACAATCACCCAGACGAAGTCTGC GAGCTGCCTCCCGATGCCTTCTTCTGGCCGACCTGGACATGGGGCGACGTTCGGTGGATGCATGAGCCCCTGAGC CCGCCGGATGCCGAGTTCTGGAAGGGCCGAATACAGGAGTTGGGCGGTAGCTTGTTCCCGAATCAGCTCGTCTAT CATGCCTGGAGCCAGATGAGCAGGAACCGCTATCTGAAACGCCTGAGGCCGGATGTCATCCGTGCGGAAAACACG AGGTTCAATCTGCTTATGAGACGTTTTCTGGAGGATGACTGA |