© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|01578 |
| Gene name | |
| Location | scaffold_01:5382666..5383194 |
| Strand | - |
| Gene length (bp) | 528 |
| Transcript length (bp) | 468 |
| Coding sequence length (bp) | 468 |
| Protein length (aa) | 156 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01284 | MARVEL | Membrane-associating domain | 1.5E-12 | 8 | 132 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 44 | 63 | 19 |
| 3 | 75 | 97 | 22 |
| 4 | 117 | 139 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01578 MSRTTVLSLRIFQFLLAAVNLGLSSYIVNWYQVTTIRGSPPSVSLLLFAAILSLLSVGYLELAPRLFPRADRPGV ILGVEAGNAVFYFTAFISHAVFLGSLAMCHGVVCTVSRVDSVVAAAGFCAWVASTILTTRDMFLAGLVRPNDKPE DMGEA* |
| Coding | >Ophcf2|01578 ATGAGCCGAACTACCGTCCTCTCGCTGCGCATCTTCCAGTTCCTCTTGGCCGCCGTCAACCTCGGCCTCTCGTCT TACATCGTCAATTGGTATCAGGTGACGACAATCCGGGGCTCGCCCCCCTCTGTCAGCCTCCTTCTTTTCGCCGCC ATCTTGTCTCTCCTGTCCGTCGGCTACCTCGAGCTCGCACCGCGGCTGTTCCCTCGCGCCGACCGACCGGGCGTG ATCCTGGGCGTCGAGGCCGGCAACGCCGTATTCTACTTTACCGCCTTCATCAGCCATGCCGTCTTCCTCGGTAGC CTGGCCATGTGCCACGGCGTCGTCTGTACCGTCAGCCGGGTCGATTCCGTCGTGGCAGCCGCTGGCTTTTGCGCA TGGGTCGCGTCGACGATCCTGACGACGAGGGACATGTTCCTCGCTGGGCTCGTGAGGCCAAACGATAAACCCGAG GACATGGGCGAAGCGTGA |
| Transcript | >Ophcf2|01578 ATGAGCCGAACTACCGTCCTCTCGCTGCGCATCTTCCAGTTCCTCTTGGCCGCCGTCAACCTCGGCCTCTCGTCT TACATCGTCAATTGGTATCAGGTGACGACAATCCGGGGCTCGCCCCCCTCTGTCAGCCTCCTTCTTTTCGCCGCC ATCTTGTCTCTCCTGTCCGTCGGCTACCTCGAGCTCGCACCGCGGCTGTTCCCTCGCGCCGACCGACCGGGCGTG ATCCTGGGCGTCGAGGCCGGCAACGCCGTATTCTACTTTACCGCCTTCATCAGCCATGCCGTCTTCCTCGGTAGC CTGGCCATGTGCCACGGCGTCGTCTGTACCGTCAGCCGGGTCGATTCCGTCGTGGCAGCCGCTGGCTTTTGCGCA TGGGTCGCGTCGACGATCCTGACGACGAGGGACATGTTCCTCGCTGGGCTCGTGAGGCCAAACGATAAACCCGAG GACATGGGCGAAGCGTGA |
| Gene | >Ophcf2|01578 ATGAGCCGAACTACCGTCCTCTCGCTGCGCATCTTCCAGTTCCTCTTGGCCGCCGTCAACCTCGGCCTCTCGTCT TACAGTTAGTTGGTCGTCGTTCGAATGCGCCTTTCTTGCTACGAGACGCTGACCTGAATTGTAGTCGTCAATTGG TATCAGGTGACGACAATCCGGGGCTCGCCCCCCTCTGTCAGCCTCCTTCTTTTCGCCGCCATCTTGTCTCTCCTG TCCGTCGGCTACCTCGAGCTCGCACCGCGGCTGTTCCCTCGCGCCGACCGACCGGGCGTGATCCTGGGCGTCGAG GCCGGCAACGCCGTATTCTACTTTACCGCCTTCATCAGCCATGCCGTCTTCCTCGGTAGCCTGGCCATGTGCCAC GGCGTCGTCTGTACCGTCAGCCGGGTCGATTCCGTCGTGGCAGCCGCTGGCTTTTGCGCATGGGTCGCGTCGACG ATCCTGACGACGAGGGACATGTTCCTCGCTGGGCTCGTGAGGCCAAACGATAAACCCGAGGACATGGGCGAAGCG TGA |