Protein ID | Ophcf2|01557 |
Gene name | |
Location | scaffold_01:5322994..5324362 |
Strand | - |
Gene length (bp) | 1368 |
Transcript length (bp) | 1368 |
Coding sequence length (bp) | 1368 |
Protein length (aa) | 456 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane | Signal peptide|Transmembrane domain | 0.1069 | 0.1563 | 0.3959 | 0.6715 | 0.1333 | 0.0075 | 0.0709 | 0.4289 | 0.1672 | 0.0156 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 224 | 246 | 22 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
Fungus | Fungus in pure culture | 127.33 | 71.26 | 183.40 |
Alive | In ants, during behavior modification | 68.68 | 37.88 | 99.48 |
Dead | In ants, recently dead | 112.46 | 62.08 | 162.84 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
Alive | Fungus | 0.000454 | yes |
Alive | Dead | 0.001945 | yes |
Dead | Fungus | 0.574632 | no |
Orthofinder run ID | 4 |
Orthogroup | 2886 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|01557 MPPEPEPDINGANRSEAFQDKRPSRLADLNMSAPTSQAPTSVVESASTPSADHAAASSAVALPAAASSSSTPSNP PPAASASTRAAPLPSSSSPSSSPVPLPTQQAPPLVPSSSSSTTTPLQHASMATPTSAPTQPSSSSSPPVAVVPSS SSPQPEASSTVITVTSSNVATSVQVVTSTKTHAPVGGLSSSTATSSSPSSTSSAAAAAIETPSSATGLTQASKVA IGVVVPIAAIAFLAIVGLFWWKKRRARQEVEEQRRKEVEDYSYNPNADPTMPAVGHTVEHAYEAKDDGGYRGWGS TATTTGSGRGRKASTTMSGGAAGTYSDPASPVRANMSDARSGEALVDGSPTHEGEILGAMGPSAANNRGGDMRRG PSNASSSYSAAARSDGSDGAMYGNGAAGYYEQCGQNPYEQRPNDQGGGQAVIRDNPARRNTRIENSSHYPQQSAG IAQNF* |
Coding | >Ophcf2|01557 ATGCCACCCGAGCCGGAGCCGGACATCAATGGCGCTAACAGGAGTGAGGCATTCCAGGACAAGAGGCCATCTCGT CTCGCCGACTTGAACATGTCGGCTCCCACGAGCCAGGCCCCGACGTCCGTCGTTGAGAGCGCCTCGACGCCTTCG GCTGATCATGCCGCTGCTTCTTCTGCCGTTGCTCTTCCCGCTGCCGCCTCGTCCTCGTCTACCCCTTCCAATCCG CCGCCTGCCGCCAGTGCCAGCACTCGAGCCGCTCCTTTGCCCTCCAGCTCATCACCGTCGTCGTCGCCAGTACCT TTGCCCACGCAACAGGCGCCGCCTCTTGTTCCTTCGTCCAGCTCATCAACGACGACGCCTCTCCAGCATGCCTCT ATGGCAACCCCGACTTCAGCCCCGACTCAGCCTTCTTCGTCCTCGTCTCCTCCCGTCGCCGTCGTCCCCTCGTCA TCCTCCCCGCAGCCCGAGGCTTCTTCGACCGTCATCACCGTGACATCCAGCAATGTGGCCACAAGTGTACAGGTC GTGACGTCGACCAAGACGCATGCCCCCGTCGGCGGGCTATCATCGTCGACGGCGACGTCGTCCTCGCCCTCGTCC ACCTCGTCCGCCGCCGCCGCCGCCATCGAAACCCCCAGCTCTGCCACAGGCCTTACACAGGCGTCAAAGGTGGCC ATTGGCGTCGTGGTGCCCATCGCCGCCATCGCCTTTCTAGCCATCGTCGGTCTTTTCTGGTGGAAGAAGCGGAGG GCGCGTCAGGAGGTCGAGGAGCAACGCCGTAAGGAGGTCGAGGATTACTCGTACAACCCCAACGCGGACCCGACC ATGCCCGCCGTCGGCCACACGGTCGAGCACGCCTACGAGGCCAAGGACGACGGCGGATACCGCGGCTGGGGCTCG ACGGCCACCACCACGGGCTCCGGCAGGGGACGCAAGGCCTCGACCACCATGTCCGGGGGCGCGGCCGGCACCTAC TCGGATCCGGCGTCGCCCGTGCGGGCCAACATGTCGGACGCTCGTTCGGGCGAGGCTCTCGTCGACGGCTCGCCG ACGCACGAGGGCGAGATTCTGGGCGCCATGGGCCCGTCGGCGGCCAATAACCGCGGCGGCGACATGCGCAGGGGC CCGTCCAACGCCTCTTCGTCTTACAGCGCGGCCGCCAGGTCTGACGGCTCCGACGGCGCCATGTACGGCAACGGG GCGGCCGGCTATTACGAGCAGTGCGGCCAGAACCCCTACGAACAGCGACCCAACGACCAGGGCGGTGGCCAGGCC GTCATCCGTGACAATCCGGCCCGACGCAACACGCGCATCGAGAATTCGTCTCACTACCCGCAGCAGAGCGCTGGC ATTGCTCAGAACTTTTGA |
Transcript | >Ophcf2|01557 ATGCCACCCGAGCCGGAGCCGGACATCAATGGCGCTAACAGGAGTGAGGCATTCCAGGACAAGAGGCCATCTCGT CTCGCCGACTTGAACATGTCGGCTCCCACGAGCCAGGCCCCGACGTCCGTCGTTGAGAGCGCCTCGACGCCTTCG GCTGATCATGCCGCTGCTTCTTCTGCCGTTGCTCTTCCCGCTGCCGCCTCGTCCTCGTCTACCCCTTCCAATCCG CCGCCTGCCGCCAGTGCCAGCACTCGAGCCGCTCCTTTGCCCTCCAGCTCATCACCGTCGTCGTCGCCAGTACCT TTGCCCACGCAACAGGCGCCGCCTCTTGTTCCTTCGTCCAGCTCATCAACGACGACGCCTCTCCAGCATGCCTCT ATGGCAACCCCGACTTCAGCCCCGACTCAGCCTTCTTCGTCCTCGTCTCCTCCCGTCGCCGTCGTCCCCTCGTCA TCCTCCCCGCAGCCCGAGGCTTCTTCGACCGTCATCACCGTGACATCCAGCAATGTGGCCACAAGTGTACAGGTC GTGACGTCGACCAAGACGCATGCCCCCGTCGGCGGGCTATCATCGTCGACGGCGACGTCGTCCTCGCCCTCGTCC ACCTCGTCCGCCGCCGCCGCCGCCATCGAAACCCCCAGCTCTGCCACAGGCCTTACACAGGCGTCAAAGGTGGCC ATTGGCGTCGTGGTGCCCATCGCCGCCATCGCCTTTCTAGCCATCGTCGGTCTTTTCTGGTGGAAGAAGCGGAGG GCGCGTCAGGAGGTCGAGGAGCAACGCCGTAAGGAGGTCGAGGATTACTCGTACAACCCCAACGCGGACCCGACC ATGCCCGCCGTCGGCCACACGGTCGAGCACGCCTACGAGGCCAAGGACGACGGCGGATACCGCGGCTGGGGCTCG ACGGCCACCACCACGGGCTCCGGCAGGGGACGCAAGGCCTCGACCACCATGTCCGGGGGCGCGGCCGGCACCTAC TCGGATCCGGCGTCGCCCGTGCGGGCCAACATGTCGGACGCTCGTTCGGGCGAGGCTCTCGTCGACGGCTCGCCG ACGCACGAGGGCGAGATTCTGGGCGCCATGGGCCCGTCGGCGGCCAATAACCGCGGCGGCGACATGCGCAGGGGC CCGTCCAACGCCTCTTCGTCTTACAGCGCGGCCGCCAGGTCTGACGGCTCCGACGGCGCCATGTACGGCAACGGG GCGGCCGGCTATTACGAGCAGTGCGGCCAGAACCCCTACGAACAGCGACCCAACGACCAGGGCGGTGGCCAGGCC GTCATCCGTGACAATCCGGCCCGACGCAACACGCGCATCGAGAATTCGTCTCACTACCCGCAGCAGAGCGCTGGC ATTGCTCAGAACTTTTGA |
Gene | >Ophcf2|01557 ATGCCACCCGAGCCGGAGCCGGACATCAATGGCGCTAACAGGAGTGAGGCATTCCAGGACAAGAGGCCATCTCGT CTCGCCGACTTGAACATGTCGGCTCCCACGAGCCAGGCCCCGACGTCCGTCGTTGAGAGCGCCTCGACGCCTTCG GCTGATCATGCCGCTGCTTCTTCTGCCGTTGCTCTTCCCGCTGCCGCCTCGTCCTCGTCTACCCCTTCCAATCCG CCGCCTGCCGCCAGTGCCAGCACTCGAGCCGCTCCTTTGCCCTCCAGCTCATCACCGTCGTCGTCGCCAGTACCT TTGCCCACGCAACAGGCGCCGCCTCTTGTTCCTTCGTCCAGCTCATCAACGACGACGCCTCTCCAGCATGCCTCT ATGGCAACCCCGACTTCAGCCCCGACTCAGCCTTCTTCGTCCTCGTCTCCTCCCGTCGCCGTCGTCCCCTCGTCA TCCTCCCCGCAGCCCGAGGCTTCTTCGACCGTCATCACCGTGACATCCAGCAATGTGGCCACAAGTGTACAGGTC GTGACGTCGACCAAGACGCATGCCCCCGTCGGCGGGCTATCATCGTCGACGGCGACGTCGTCCTCGCCCTCGTCC ACCTCGTCCGCCGCCGCCGCCGCCATCGAAACCCCCAGCTCTGCCACAGGCCTTACACAGGCGTCAAAGGTGGCC ATTGGCGTCGTGGTGCCCATCGCCGCCATCGCCTTTCTAGCCATCGTCGGTCTTTTCTGGTGGAAGAAGCGGAGG GCGCGTCAGGAGGTCGAGGAGCAACGCCGTAAGGAGGTCGAGGATTACTCGTACAACCCCAACGCGGACCCGACC ATGCCCGCCGTCGGCCACACGGTCGAGCACGCCTACGAGGCCAAGGACGACGGCGGATACCGCGGCTGGGGCTCG ACGGCCACCACCACGGGCTCCGGCAGGGGACGCAAGGCCTCGACCACCATGTCCGGGGGCGCGGCCGGCACCTAC TCGGATCCGGCGTCGCCCGTGCGGGCCAACATGTCGGACGCTCGTTCGGGCGAGGCTCTCGTCGACGGCTCGCCG ACGCACGAGGGCGAGATTCTGGGCGCCATGGGCCCGTCGGCGGCCAATAACCGCGGCGGCGACATGCGCAGGGGC CCGTCCAACGCCTCTTCGTCTTACAGCGCGGCCGCCAGGTCTGACGGCTCCGACGGCGCCATGTACGGCAACGGG GCGGCCGGCTATTACGAGCAGTGCGGCCAGAACCCCTACGAACAGCGACCCAACGACCAGGGCGGTGGCCAGGCC GTCATCCGTGACAATCCGGCCCGACGCAACACGCGCATCGAGAATTCGTCTCACTACCCGCAGCAGAGCGCTGGC ATTGCTCAGAACTTTTGA |