Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|01557
Gene name
Location	scaffold_01:5322994..5324362
Strand	-
Gene length (bp)	1368
Transcript length (bp)	1368
Coding sequence length (bp)	1368
Protein length (aa)	456

Overview

PFAM Domains

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]

Localizations	Signals	Cytoplasm	Nucleus	Extracellular	Cell membrane	Mitochondrion	Plastid	Endoplasmic reticulum	Lysosome vacuole	Golgi apparatus	Peroxisome
Cell membrane	Signal peptide\|Transmembrane domain	0.1069	0.1563	0.3959	0.6715	0.1333	0.0075	0.0709	0.4289	0.1672	0.0156

SignalP

(None)

Transmembrane Domains

Domain #	Start	End	Length
1	224	246	22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	127.33	71.26	183.40
Alive	In ants, during behavior modification	68.68	37.88	99.48
Dead	In ants, recently dead	112.46	62.08	162.84

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.000454	yes
Alive	Dead	0.001945	yes
Dead	Fungus	0.574632	no

Orthologs

Orthofinder run ID	4
Orthogroup	2886
Change Orthofinder run

Species	Protein ID
Ophiocordyceps australis 1348a (Ghana)	OphauG2\|1479
Ophiocordyceps australis map64 (Brazil)	OphauB2\|5121
Ophiocordyceps camponoti-floridani	Ophcf2\|01557 (this protein)
Ophiocordyceps camponoti-rufipedis	Ophun1\|3650
Ophiocordyceps kimflemingae	Ophio5\|5559
Ophiocordyceps subramaniannii	Hirsu2\|4792

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|01557 MPPEPEPDINGANRSEAFQDKRPSRLADLNMSAPTSQAPTSVVESASTPSADHAAASSAVALPAAASSSSTPSNP PPAASASTRAAPLPSSSSPSSSPVPLPTQQAPPLVPSSSSSTTTPLQHASMATPTSAPTQPSSSSSPPVAVVPSS SSPQPEASSTVITVTSSNVATSVQVVTSTKTHAPVGGLSSSTATSSSPSSTSSAAAAAIETPSSATGLTQASKVA IGVVVPIAAIAFLAIVGLFWWKKRRARQEVEEQRRKEVEDYSYNPNADPTMPAVGHTVEHAYEAKDDGGYRGWGS TATTTGSGRGRKASTTMSGGAAGTYSDPASPVRANMSDARSGEALVDGSPTHEGEILGAMGPSAANNRGGDMRRG PSNASSSYSAAARSDGSDGAMYGNGAAGYYEQCGQNPYEQRPNDQGGGQAVIRDNPARRNTRIENSSHYPQQSAG IAQNF*
Coding	>Ophcf2\|01557 ATGCCACCCGAGCCGGAGCCGGACATCAATGGCGCTAACAGGAGTGAGGCATTCCAGGACAAGAGGCCATCTCGT CTCGCCGACTTGAACATGTCGGCTCCCACGAGCCAGGCCCCGACGTCCGTCGTTGAGAGCGCCTCGACGCCTTCG GCTGATCATGCCGCTGCTTCTTCTGCCGTTGCTCTTCCCGCTGCCGCCTCGTCCTCGTCTACCCCTTCCAATCCG CCGCCTGCCGCCAGTGCCAGCACTCGAGCCGCTCCTTTGCCCTCCAGCTCATCACCGTCGTCGTCGCCAGTACCT TTGCCCACGCAACAGGCGCCGCCTCTTGTTCCTTCGTCCAGCTCATCAACGACGACGCCTCTCCAGCATGCCTCT ATGGCAACCCCGACTTCAGCCCCGACTCAGCCTTCTTCGTCCTCGTCTCCTCCCGTCGCCGTCGTCCCCTCGTCA TCCTCCCCGCAGCCCGAGGCTTCTTCGACCGTCATCACCGTGACATCCAGCAATGTGGCCACAAGTGTACAGGTC GTGACGTCGACCAAGACGCATGCCCCCGTCGGCGGGCTATCATCGTCGACGGCGACGTCGTCCTCGCCCTCGTCC ACCTCGTCCGCCGCCGCCGCCGCCATCGAAACCCCCAGCTCTGCCACAGGCCTTACACAGGCGTCAAAGGTGGCC ATTGGCGTCGTGGTGCCCATCGCCGCCATCGCCTTTCTAGCCATCGTCGGTCTTTTCTGGTGGAAGAAGCGGAGG GCGCGTCAGGAGGTCGAGGAGCAACGCCGTAAGGAGGTCGAGGATTACTCGTACAACCCCAACGCGGACCCGACC ATGCCCGCCGTCGGCCACACGGTCGAGCACGCCTACGAGGCCAAGGACGACGGCGGATACCGCGGCTGGGGCTCG ACGGCCACCACCACGGGCTCCGGCAGGGGACGCAAGGCCTCGACCACCATGTCCGGGGGCGCGGCCGGCACCTAC TCGGATCCGGCGTCGCCCGTGCGGGCCAACATGTCGGACGCTCGTTCGGGCGAGGCTCTCGTCGACGGCTCGCCG ACGCACGAGGGCGAGATTCTGGGCGCCATGGGCCCGTCGGCGGCCAATAACCGCGGCGGCGACATGCGCAGGGGC CCGTCCAACGCCTCTTCGTCTTACAGCGCGGCCGCCAGGTCTGACGGCTCCGACGGCGCCATGTACGGCAACGGG GCGGCCGGCTATTACGAGCAGTGCGGCCAGAACCCCTACGAACAGCGACCCAACGACCAGGGCGGTGGCCAGGCC GTCATCCGTGACAATCCGGCCCGACGCAACACGCGCATCGAGAATTCGTCTCACTACCCGCAGCAGAGCGCTGGC ATTGCTCAGAACTTTTGA
Transcript	>Ophcf2\|01557 ATGCCACCCGAGCCGGAGCCGGACATCAATGGCGCTAACAGGAGTGAGGCATTCCAGGACAAGAGGCCATCTCGT CTCGCCGACTTGAACATGTCGGCTCCCACGAGCCAGGCCCCGACGTCCGTCGTTGAGAGCGCCTCGACGCCTTCG GCTGATCATGCCGCTGCTTCTTCTGCCGTTGCTCTTCCCGCTGCCGCCTCGTCCTCGTCTACCCCTTCCAATCCG CCGCCTGCCGCCAGTGCCAGCACTCGAGCCGCTCCTTTGCCCTCCAGCTCATCACCGTCGTCGTCGCCAGTACCT TTGCCCACGCAACAGGCGCCGCCTCTTGTTCCTTCGTCCAGCTCATCAACGACGACGCCTCTCCAGCATGCCTCT ATGGCAACCCCGACTTCAGCCCCGACTCAGCCTTCTTCGTCCTCGTCTCCTCCCGTCGCCGTCGTCCCCTCGTCA TCCTCCCCGCAGCCCGAGGCTTCTTCGACCGTCATCACCGTGACATCCAGCAATGTGGCCACAAGTGTACAGGTC GTGACGTCGACCAAGACGCATGCCCCCGTCGGCGGGCTATCATCGTCGACGGCGACGTCGTCCTCGCCCTCGTCC ACCTCGTCCGCCGCCGCCGCCGCCATCGAAACCCCCAGCTCTGCCACAGGCCTTACACAGGCGTCAAAGGTGGCC ATTGGCGTCGTGGTGCCCATCGCCGCCATCGCCTTTCTAGCCATCGTCGGTCTTTTCTGGTGGAAGAAGCGGAGG GCGCGTCAGGAGGTCGAGGAGCAACGCCGTAAGGAGGTCGAGGATTACTCGTACAACCCCAACGCGGACCCGACC ATGCCCGCCGTCGGCCACACGGTCGAGCACGCCTACGAGGCCAAGGACGACGGCGGATACCGCGGCTGGGGCTCG ACGGCCACCACCACGGGCTCCGGCAGGGGACGCAAGGCCTCGACCACCATGTCCGGGGGCGCGGCCGGCACCTAC TCGGATCCGGCGTCGCCCGTGCGGGCCAACATGTCGGACGCTCGTTCGGGCGAGGCTCTCGTCGACGGCTCGCCG ACGCACGAGGGCGAGATTCTGGGCGCCATGGGCCCGTCGGCGGCCAATAACCGCGGCGGCGACATGCGCAGGGGC CCGTCCAACGCCTCTTCGTCTTACAGCGCGGCCGCCAGGTCTGACGGCTCCGACGGCGCCATGTACGGCAACGGG GCGGCCGGCTATTACGAGCAGTGCGGCCAGAACCCCTACGAACAGCGACCCAACGACCAGGGCGGTGGCCAGGCC GTCATCCGTGACAATCCGGCCCGACGCAACACGCGCATCGAGAATTCGTCTCACTACCCGCAGCAGAGCGCTGGC ATTGCTCAGAACTTTTGA
Gene	>Ophcf2\|01557 ATGCCACCCGAGCCGGAGCCGGACATCAATGGCGCTAACAGGAGTGAGGCATTCCAGGACAAGAGGCCATCTCGT CTCGCCGACTTGAACATGTCGGCTCCCACGAGCCAGGCCCCGACGTCCGTCGTTGAGAGCGCCTCGACGCCTTCG GCTGATCATGCCGCTGCTTCTTCTGCCGTTGCTCTTCCCGCTGCCGCCTCGTCCTCGTCTACCCCTTCCAATCCG CCGCCTGCCGCCAGTGCCAGCACTCGAGCCGCTCCTTTGCCCTCCAGCTCATCACCGTCGTCGTCGCCAGTACCT TTGCCCACGCAACAGGCGCCGCCTCTTGTTCCTTCGTCCAGCTCATCAACGACGACGCCTCTCCAGCATGCCTCT ATGGCAACCCCGACTTCAGCCCCGACTCAGCCTTCTTCGTCCTCGTCTCCTCCCGTCGCCGTCGTCCCCTCGTCA TCCTCCCCGCAGCCCGAGGCTTCTTCGACCGTCATCACCGTGACATCCAGCAATGTGGCCACAAGTGTACAGGTC GTGACGTCGACCAAGACGCATGCCCCCGTCGGCGGGCTATCATCGTCGACGGCGACGTCGTCCTCGCCCTCGTCC ACCTCGTCCGCCGCCGCCGCCGCCATCGAAACCCCCAGCTCTGCCACAGGCCTTACACAGGCGTCAAAGGTGGCC ATTGGCGTCGTGGTGCCCATCGCCGCCATCGCCTTTCTAGCCATCGTCGGTCTTTTCTGGTGGAAGAAGCGGAGG GCGCGTCAGGAGGTCGAGGAGCAACGCCGTAAGGAGGTCGAGGATTACTCGTACAACCCCAACGCGGACCCGACC ATGCCCGCCGTCGGCCACACGGTCGAGCACGCCTACGAGGCCAAGGACGACGGCGGATACCGCGGCTGGGGCTCG ACGGCCACCACCACGGGCTCCGGCAGGGGACGCAAGGCCTCGACCACCATGTCCGGGGGCGCGGCCGGCACCTAC TCGGATCCGGCGTCGCCCGTGCGGGCCAACATGTCGGACGCTCGTTCGGGCGAGGCTCTCGTCGACGGCTCGCCG ACGCACGAGGGCGAGATTCTGGGCGCCATGGGCCCGTCGGCGGCCAATAACCGCGGCGGCGACATGCGCAGGGGC CCGTCCAACGCCTCTTCGTCTTACAGCGCGGCCGCCAGGTCTGACGGCTCCGACGGCGCCATGTACGGCAACGGG GCGGCCGGCTATTACGAGCAGTGCGGCCAGAACCCCTACGAACAGCGACCCAACGACCAGGGCGGTGGCCAGGCC GTCATCCGTGACAATCCGGCCCGACGCAACACGCGCATCGAGAATTCGTCTCACTACCCGCAGCAGAGCGCTGGC ATTGCTCAGAACTTTTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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