Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|01516
Gene name
Locationscaffold_01:5199025..5199802
Strand+
Gene length (bp)777
Transcript length (bp)717
Coding sequence length (bp)717
Protein length (aa) 239

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05648 PEX11 Peroxisomal biogenesis factor 11 (PEX11) 3.2E-64 12 234

GO

GO Term Description Terminal node
GO:0005779 integral component of peroxisomal membrane Yes
GO:0016559 peroxisome fission Yes
GO:0005575 cellular_component No
GO:0071840 cellular component organization or biogenesis No
GO:0048285 organelle fission No
GO:0031231 intrinsic component of peroxisomal membrane No
GO:0008150 biological_process No
GO:0031224 intrinsic component of membrane No
GO:0031300 intrinsic component of organelle membrane No
GO:0006996 organelle organization No
GO:0009987 cellular process No
GO:0016021 integral component of membrane No
GO:0016043 cellular component organization No
GO:0031301 integral component of organelle membrane No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 51 0.45

Transmembrane Domains

Domain # Start End Length
1 143 162 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|01516
MVADALVYHPSLAHYLRFAATTLGRDKLLRTIQYFARFYAWYLLRTNALATRIDPWATLKRHLSLTRRILRLGKP
VEHLRAAAVALDGQNQRKQDAGFLRYVAVARQLAYAVYLSLDTLALPDALGLVKSPRAPAMQRQANRFWAFGIIF
SLAAQLYSLRALRMREARIDRKDGEGVVESKRIAFERNTSQIQLLCDLCDLTIPASALGWVALDDGFVGLAGLCS
SLIGIHSQWNKTA*
Coding >Ophcf2|01516
ATGGTCGCCGACGCCCTCGTCTACCACCCCTCCCTCGCCCACTACCTCCGCTTCGCCGCCACGACCCTCGGCCGC
GACAAACTCCTCCGCACAATCCAATACTTCGCCCGCTTCTACGCCTGGTACCTCCTACGCACCAACGCCCTCGCC
ACCCGAATCGACCCCTGGGCCACGCTCAAGCGCCACCTTTCCCTCACCCGCCGCATCCTCCGCCTCGGCAAGCCA
GTAGAGCACCTGCGAGCCGCGGCCGTGGCCCTCGATGGCCAAAACCAGCGGAAGCAGGATGCGGGATTCCTACGT
TATGTTGCCGTGGCGAGGCAGCTTGCTTATGCTGTTTACCTATCTCTTGATACCCTCGCTCTCCCTGATGCGCTT
GGGCTGGTAAAGTCGCCTCGCGCTCCGGCTATGCAACGACAGGCCAATCGCTTCTGGGCCTTTGGCATCATCTTC
AGCCTCGCCGCTCAGCTATACTCCCTCCGCGCTCTACGCATGCGCGAGGCCCGTATCGATCGCAAGGATGGCGAG
GGTGTCGTCGAGAGCAAGCGGATCGCCTTCGAGAGAAACACCAGCCAGATCCAGCTCCTCTGCGATCTCTGCGAC
CTCACCATCCCGGCCTCTGCCCTCGGCTGGGTCGCCCTCGACGATGGCTTCGTCGGCTTGGCCGGTCTCTGCAGC
AGCCTCATCGGCATCCACTCCCAATGGAACAAGACCGCCTAA
Transcript >Ophcf2|01516
ATGGTCGCCGACGCCCTCGTCTACCACCCCTCCCTCGCCCACTACCTCCGCTTCGCCGCCACGACCCTCGGCCGC
GACAAACTCCTCCGCACAATCCAATACTTCGCCCGCTTCTACGCCTGGTACCTCCTACGCACCAACGCCCTCGCC
ACCCGAATCGACCCCTGGGCCACGCTCAAGCGCCACCTTTCCCTCACCCGCCGCATCCTCCGCCTCGGCAAGCCA
GTAGAGCACCTGCGAGCCGCGGCCGTGGCCCTCGATGGCCAAAACCAGCGGAAGCAGGATGCGGGATTCCTACGT
TATGTTGCCGTGGCGAGGCAGCTTGCTTATGCTGTTTACCTATCTCTTGATACCCTCGCTCTCCCTGATGCGCTT
GGGCTGGTAAAGTCGCCTCGCGCTCCGGCTATGCAACGACAGGCCAATCGCTTCTGGGCCTTTGGCATCATCTTC
AGCCTCGCCGCTCAGCTATACTCCCTCCGCGCTCTACGCATGCGCGAGGCCCGTATCGATCGCAAGGATGGCGAG
GGTGTCGTCGAGAGCAAGCGGATCGCCTTCGAGAGAAACACCAGCCAGATCCAGCTCCTCTGCGATCTCTGCGAC
CTCACCATCCCGGCCTCTGCCCTCGGCTGGGTCGCCCTCGACGATGGCTTCGTCGGCTTGGCCGGTCTCTGCAGC
AGCCTCATCGGCATCCACTCCCAATGGAACAAGACCGCCTAA
Gene >Ophcf2|01516
ATGGTCGCCGACGCCCTCGTCTACCACCCCTCCCTCGCCCACTACCTCCGCTTCGCCGCCACGACCCTCGGCCGC
GACAAACTCCTCCGCACAATCCAATACTTCGCCCGCTTCTACGCCTGGTACCTCCTACGCACCAACGCCCTCGCC
ACCCGAATCGACCCCTGGGCCACGCTCAAGCGCCACCTTTCCCTCACCCGCCGCATCCTCCGCCTCGGCAAGCCA
GTAGAGCACCTGCGAGCCGCGGCCGTGGCCCTCGATGGCCAAAACCAGCGGAAGCAGGATGCGGGATTCCTACGT
TATGTTGCCGTGGCGAGGCAGCTTGCTTATGCTGTTTACCTATCTCTTGATACCCTCGCTCTCCCTGATGCGCTT
GGGCTGGTAAAGTCGCCTCGCGCTCCGGCTATGCAACGACAGGCCAATCGCTTCTGGGCCTTTGGCATCATCTTC
AGCCTCGCCGCTCAGCTATACTCCCTCCGCGCTCTACGCATGCGCGAGGCCCGTATCGATCGCAAGGATGGCGAG
GGTGTCGTCGAGAGCAAGCGGATCGCCTTGTGAGTTCTTCAATCCTTTTAACCCCCGCCCACTTATACTCACCTT
TTCCTCCTTCTCAGCGAGAGAAACACCAGCCAGATCCAGCTCCTCTGCGATCTCTGCGACCTCACCATCCCGGCC
TCTGCCCTCGGCTGGGTCGCCCTCGACGATGGCTTCGTCGGCTTGGCCGGTCTCTGCAGCAGCCTCATCGGCATC
CACTCCCAATGGAACAAGACCGCCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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