© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01508 |
| Gene name | |
| Location | scaffold_01:5184871..5186038 |
| Strand | + |
| Gene length (bp) | 1167 |
| Transcript length (bp) | 1098 |
| Coding sequence length (bp) | 1098 |
| Protein length (aa) | 366 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00742 | Homoserine_dh | Homoserine dehydrogenase | 2.7E-50 | 155 | 358 |
| PF03447 | NAD_binding_3 | Homoserine dehydrogenase, NAD binding domain | 2.3E-16 | 13 | 147 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006520 | cellular amino acid metabolic process | Yes |
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0050661 | NADP binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0043436 | oxoacid metabolic process | No |
| GO:0019752 | carboxylic acid metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0005488 | binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0000166 | nucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 109.06 | 62.72 | 155.40 |
| Alive | In ants, during behavior modification | 89.24 | 51.00 | 127.47 |
| Dead | In ants, recently dead | 74.44 | 41.99 | 106.88 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.302695 | no |
| Alive | Dead | 0.286245 | no |
| Dead | Fungus | 0.037163 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01508 MSAPNRVLIAVIGVGGVGKCFLSQLRLLAARRPSPKLSLCYISSSRKALYNDDYSEIAVEGVIEALAASRKAPPS LPEVVEYLAAAPDKVILVDNTSSQHVADAYPLALGLGVNIVTPNKKAFSGPYELWQDILAASTASGAKFYHESSV GAGLPVISTLRDLIDTGDKVTKIEGVFSGTMSFLFNSFAPTDGQGGAWSAEVIKAKALGYTEPDPRDDLNGLDVA RKLTILARLVGLPIQSPTSFPVQSLIPKELESCQSGDEFLEKLAAFDSQMEVTKSAAEMEGKVVRFVGSIDVGTK QVKVGLDMFEPSHPIAALKGSDNIISFYTERYGSNPLIVQGAGAGGEVTAMGVTADMLKVVAQIS* |
| Coding | >Ophcf2|01508 ATGAGCGCCCCAAACAGAGTCTTGATCGCCGTCATCGGCGTCGGCGGCGTGGGCAAATGCTTCCTCTCTCAGCTG CGATTGCTGGCCGCGCGCAGACCGTCACCGAAGCTCAGTCTTTGCTACATCTCGTCCAGTCGCAAGGCTCTGTAC AATGATGATTACTCCGAGATCGCCGTCGAGGGCGTCATCGAGGCTCTGGCCGCGTCGAGAAAAGCCCCCCCTTCG CTCCCCGAAGTCGTCGAGTATCTCGCTGCTGCTCCCGACAAGGTGATACTCGTCGACAACACCAGCTCGCAGCAT GTTGCCGATGCGTACCCGCTCGCTCTCGGCCTGGGCGTCAACATCGTCACTCCCAATAAAAAGGCTTTCTCCGGT CCCTACGAGCTCTGGCAGGACATCCTGGCCGCGTCGACCGCGTCTGGCGCCAAGTTCTACCACGAGTCGTCCGTC GGTGCCGGCTTGCCCGTCATCTCGACGCTAAGGGACCTGATAGACACGGGCGACAAGGTGACCAAGATCGAGGGT GTATTCAGCGGCACCATGTCTTTCCTCTTCAATTCCTTCGCCCCCACCGACGGGCAAGGCGGCGCCTGGTCAGCC GAGGTCATCAAGGCCAAGGCGCTCGGCTACACCGAACCGGACCCGCGCGATGACCTCAACGGACTCGACGTCGCT CGCAAGTTGACGATTCTGGCCCGCCTCGTCGGCCTCCCGATACAATCTCCGACGTCGTTTCCCGTCCAGAGTCTC ATCCCGAAGGAGCTCGAGTCCTGTCAGAGCGGCGACGAGTTTCTCGAAAAGCTCGCCGCCTTTGATAGTCAGATG GAGGTGACCAAGTCCGCGGCGGAGATGGAGGGCAAGGTGGTCCGGTTCGTGGGCAGCATCGATGTGGGCACCAAA CAGGTCAAGGTTGGACTGGACATGTTTGAGCCGTCGCATCCGATTGCGGCGCTCAAGGGAAGCGACAACATCATA AGCTTCTACACCGAGAGATACGGAAGCAATCCCCTGATTGTACAGGGTGCCGGGGCGGGGGGCGAGGTGACGGCA ATGGGCGTGACGGCCGACATGCTCAAGGTGGTGGCGCAAATCTCATAG |
| Transcript | >Ophcf2|01508 ATGAGCGCCCCAAACAGAGTCTTGATCGCCGTCATCGGCGTCGGCGGCGTGGGCAAATGCTTCCTCTCTCAGCTG CGATTGCTGGCCGCGCGCAGACCGTCACCGAAGCTCAGTCTTTGCTACATCTCGTCCAGTCGCAAGGCTCTGTAC AATGATGATTACTCCGAGATCGCCGTCGAGGGCGTCATCGAGGCTCTGGCCGCGTCGAGAAAAGCCCCCCCTTCG CTCCCCGAAGTCGTCGAGTATCTCGCTGCTGCTCCCGACAAGGTGATACTCGTCGACAACACCAGCTCGCAGCAT GTTGCCGATGCGTACCCGCTCGCTCTCGGCCTGGGCGTCAACATCGTCACTCCCAATAAAAAGGCTTTCTCCGGT CCCTACGAGCTCTGGCAGGACATCCTGGCCGCGTCGACCGCGTCTGGCGCCAAGTTCTACCACGAGTCGTCCGTC GGTGCCGGCTTGCCCGTCATCTCGACGCTAAGGGACCTGATAGACACGGGCGACAAGGTGACCAAGATCGAGGGT GTATTCAGCGGCACCATGTCTTTCCTCTTCAATTCCTTCGCCCCCACCGACGGGCAAGGCGGCGCCTGGTCAGCC GAGGTCATCAAGGCCAAGGCGCTCGGCTACACCGAACCGGACCCGCGCGATGACCTCAACGGACTCGACGTCGCT CGCAAGTTGACGATTCTGGCCCGCCTCGTCGGCCTCCCGATACAATCTCCGACGTCGTTTCCCGTCCAGAGTCTC ATCCCGAAGGAGCTCGAGTCCTGTCAGAGCGGCGACGAGTTTCTCGAAAAGCTCGCCGCCTTTGATAGTCAGATG GAGGTGACCAAGTCCGCGGCGGAGATGGAGGGCAAGGTGGTCCGGTTCGTGGGCAGCATCGATGTGGGCACCAAA CAGGTCAAGGTTGGACTGGACATGTTTGAGCCGTCGCATCCGATTGCGGCGCTCAAGGGAAGCGACAACATCATA AGCTTCTACACCGAGAGATACGGAAGCAATCCCCTGATTGTACAGGGTGCCGGGGCGGGGGGCGAGGTGACGGCA ATGGGCGTGACGGCCGACATGCTCAAGGTGGTGGCGCAAATCTCATAG |
| Gene | >Ophcf2|01508 ATGAGCGCCCCAAACAGAGTCTTGATCGCCGTCATCGGTCGGTCCGCCCGCGTCTGTCTCGGGCCAAAGAGCCGC CGCTGACCAGGAATTTCTTCGCTCTTCCCAGGCGTCGGCGGCGTGGGCAAATGCTTCCTCTCTCAGCTGCGATTG CTGGCCGCGCGCAGACCGTCACCGAAGCTCAGTCTTTGCTACATCTCGTCCAGTCGCAAGGCTCTGTACAATGAT GATTACTCCGAGATCGCCGTCGAGGGCGTCATCGAGGCTCTGGCCGCGTCGAGAAAAGCCCCCCCTTCGCTCCCC GAAGTCGTCGAGTATCTCGCTGCTGCTCCCGACAAGGTGATACTCGTCGACAACACCAGCTCGCAGCATGTTGCC GATGCGTACCCGCTCGCTCTCGGCCTGGGCGTCAACATCGTCACTCCCAATAAAAAGGCTTTCTCCGGTCCCTAC GAGCTCTGGCAGGACATCCTGGCCGCGTCGACCGCGTCTGGCGCCAAGTTCTACCACGAGTCGTCCGTCGGTGCC GGCTTGCCCGTCATCTCGACGCTAAGGGACCTGATAGACACGGGCGACAAGGTGACCAAGATCGAGGGTGTATTC AGCGGCACCATGTCTTTCCTCTTCAATTCCTTCGCCCCCACCGACGGGCAAGGCGGCGCCTGGTCAGCCGAGGTC ATCAAGGCCAAGGCGCTCGGCTACACCGAACCGGACCCGCGCGATGACCTCAACGGACTCGACGTCGCTCGCAAG TTGACGATTCTGGCCCGCCTCGTCGGCCTCCCGATACAATCTCCGACGTCGTTTCCCGTCCAGAGTCTCATCCCG AAGGAGCTCGAGTCCTGTCAGAGCGGCGACGAGTTTCTCGAAAAGCTCGCCGCCTTTGATAGTCAGATGGAGGTG ACCAAGTCCGCGGCGGAGATGGAGGGCAAGGTGGTCCGGTTCGTGGGCAGCATCGATGTGGGCACCAAACAGGTC AAGGTTGGACTGGACATGTTTGAGCCGTCGCATCCGATTGCGGCGCTCAAGGGAAGCGACAACATCATAAGCTTC TACACCGAGAGATACGGAAGCAATCCCCTGATTGTACAGGGTGCCGGGGCGGGGGGCGAGGTGACGGCAATGGGC GTGACGGCCGACATGCTCAAGGTGGTGGCGCAAATCTCATAG |