© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01452 |
| Gene name | |
| Location | scaffold_01:5038581..5039643 |
| Strand | - |
| Gene length (bp) | 1062 |
| Transcript length (bp) | 1062 |
| Coding sequence length (bp) | 1062 |
| Protein length (aa) | 354 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 85 | 104 | 19 |
| 2 | 147 | 169 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 105.78 | 60.75 | 150.82 |
| Alive | In ants, during behavior modification | 87.59 | 49.37 | 125.80 |
| Dead | In ants, recently dead | 97.72 | 55.86 | 139.59 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.349196 | no |
| Alive | Dead | 0.547496 | no |
| Dead | Fungus | 0.720850 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01452 MAEKPQRRRYENATDLILARKQFQPVIHEQVQRLLNRDSDGVPLRKSSKVAIVTEKFAVDVATTWGSQLSDEQIM AVARRSSQALNWILFFKISVGCFAGYRTFKGRKTFRFPLWTPKPDTWSPRLNPYTCGDGGRYVWHGLRWASYYAL YSALFAPISSLFITTSFAIELEKDPQFRSMVMNDQQNDAQPPTDQNGWGSRSQSERITDQASVYAENSISARARP GWAASRRQQNEAPQQDSLDNVLDDASPVSSTTPQDDGLDTNFSGSAWDRVRQQSRDQQGHDARNAETAYGHDRRA AGPQDRGGNESYTFSSSDEDGAAAKTVSQKEFDDLLERERRGIDQQSTSGRRS* |
| Coding | >Ophcf2|01452 ATGGCGGAAAAGCCCCAACGCCGACGATATGAAAACGCCACGGATCTCATTCTCGCCCGCAAACAGTTCCAGCCA GTAATCCACGAGCAGGTCCAGCGCCTACTCAACAGGGACAGCGACGGCGTCCCACTCCGCAAATCCTCCAAAGTC GCTATAGTGACGGAGAAGTTCGCCGTCGACGTTGCCACCACGTGGGGAAGTCAACTTAGCGATGAACAGATCATG GCAGTGGCCCGGAGAAGCTCCCAGGCCCTCAACTGGATATTGTTCTTCAAGATCAGTGTAGGATGCTTCGCAGGC TATCGGACTTTCAAGGGCCGCAAGACTTTTCGATTTCCCTTGTGGACTCCTAAGCCAGACACCTGGAGTCCTAGA CTCAATCCATACACGTGCGGAGACGGTGGTCGATATGTTTGGCATGGGCTTCGCTGGGCCTCGTACTATGCCTTG TACAGCGCCCTTTTTGCCCCGATATCGTCTCTGTTCATCACGACCTCATTTGCAATCGAATTGGAAAAGGACCCG CAGTTCCGGAGCATGGTAATGAATGACCAGCAGAACGATGCTCAGCCCCCGACCGATCAGAATGGATGGGGATCT AGGTCACAATCGGAGCGTATCACGGATCAAGCATCCGTCTACGCGGAGAACAGTATATCAGCTCGAGCTCGACCC GGATGGGCCGCGTCTCGACGACAGCAAAACGAAGCCCCGCAACAGGACTCGTTGGATAATGTCCTCGACGACGCC TCTCCAGTCTCTTCTACCACACCACAAGATGACGGCCTCGACACCAACTTCAGCGGCTCAGCCTGGGATCGCGTC CGCCAACAATCGCGAGATCAGCAGGGTCACGACGCCCGCAACGCTGAGACGGCTTATGGGCACGATCGCCGCGCG GCAGGTCCTCAGGACCGGGGAGGCAACGAGAGCTATACCTTCTCGAGCTCTGACGAGGATGGGGCCGCGGCCAAG ACGGTCTCGCAAAAGGAGTTTGACGACCTCTTGGAGAGAGAGCGTCGTGGCATTGACCAGCAGTCGACTTCCGGG CGCCGGAGTTGA |
| Transcript | >Ophcf2|01452 ATGGCGGAAAAGCCCCAACGCCGACGATATGAAAACGCCACGGATCTCATTCTCGCCCGCAAACAGTTCCAGCCA GTAATCCACGAGCAGGTCCAGCGCCTACTCAACAGGGACAGCGACGGCGTCCCACTCCGCAAATCCTCCAAAGTC GCTATAGTGACGGAGAAGTTCGCCGTCGACGTTGCCACCACGTGGGGAAGTCAACTTAGCGATGAACAGATCATG GCAGTGGCCCGGAGAAGCTCCCAGGCCCTCAACTGGATATTGTTCTTCAAGATCAGTGTAGGATGCTTCGCAGGC TATCGGACTTTCAAGGGCCGCAAGACTTTTCGATTTCCCTTGTGGACTCCTAAGCCAGACACCTGGAGTCCTAGA CTCAATCCATACACGTGCGGAGACGGTGGTCGATATGTTTGGCATGGGCTTCGCTGGGCCTCGTACTATGCCTTG TACAGCGCCCTTTTTGCCCCGATATCGTCTCTGTTCATCACGACCTCATTTGCAATCGAATTGGAAAAGGACCCG CAGTTCCGGAGCATGGTAATGAATGACCAGCAGAACGATGCTCAGCCCCCGACCGATCAGAATGGATGGGGATCT AGGTCACAATCGGAGCGTATCACGGATCAAGCATCCGTCTACGCGGAGAACAGTATATCAGCTCGAGCTCGACCC GGATGGGCCGCGTCTCGACGACAGCAAAACGAAGCCCCGCAACAGGACTCGTTGGATAATGTCCTCGACGACGCC TCTCCAGTCTCTTCTACCACACCACAAGATGACGGCCTCGACACCAACTTCAGCGGCTCAGCCTGGGATCGCGTC CGCCAACAATCGCGAGATCAGCAGGGTCACGACGCCCGCAACGCTGAGACGGCTTATGGGCACGATCGCCGCGCG GCAGGTCCTCAGGACCGGGGAGGCAACGAGAGCTATACCTTCTCGAGCTCTGACGAGGATGGGGCCGCGGCCAAG ACGGTCTCGCAAAAGGAGTTTGACGACCTCTTGGAGAGAGAGCGTCGTGGCATTGACCAGCAGTCGACTTCCGGG CGCCGGAGTTGA |
| Gene | >Ophcf2|01452 ATGGCGGAAAAGCCCCAACGCCGACGATATGAAAACGCCACGGATCTCATTCTCGCCCGCAAACAGTTCCAGCCA GTAATCCACGAGCAGGTCCAGCGCCTACTCAACAGGGACAGCGACGGCGTCCCACTCCGCAAATCCTCCAAAGTC GCTATAGTGACGGAGAAGTTCGCCGTCGACGTTGCCACCACGTGGGGAAGTCAACTTAGCGATGAACAGATCATG GCAGTGGCCCGGAGAAGCTCCCAGGCCCTCAACTGGATATTGTTCTTCAAGATCAGTGTAGGATGCTTCGCAGGC TATCGGACTTTCAAGGGCCGCAAGACTTTTCGATTTCCCTTGTGGACTCCTAAGCCAGACACCTGGAGTCCTAGA CTCAATCCATACACGTGCGGAGACGGTGGTCGATATGTTTGGCATGGGCTTCGCTGGGCCTCGTACTATGCCTTG TACAGCGCCCTTTTTGCCCCGATATCGTCTCTGTTCATCACGACCTCATTTGCAATCGAATTGGAAAAGGACCCG CAGTTCCGGAGCATGGTAATGAATGACCAGCAGAACGATGCTCAGCCCCCGACCGATCAGAATGGATGGGGATCT AGGTCACAATCGGAGCGTATCACGGATCAAGCATCCGTCTACGCGGAGAACAGTATATCAGCTCGAGCTCGACCC GGATGGGCCGCGTCTCGACGACAGCAAAACGAAGCCCCGCAACAGGACTCGTTGGATAATGTCCTCGACGACGCC TCTCCAGTCTCTTCTACCACACCACAAGATGACGGCCTCGACACCAACTTCAGCGGCTCAGCCTGGGATCGCGTC CGCCAACAATCGCGAGATCAGCAGGGTCACGACGCCCGCAACGCTGAGACGGCTTATGGGCACGATCGCCGCGCG GCAGGTCCTCAGGACCGGGGAGGCAACGAGAGCTATACCTTCTCGAGCTCTGACGAGGATGGGGCCGCGGCCAAG ACGGTCTCGCAAAAGGAGTTTGACGACCTCTTGGAGAGAGAGCGTCGTGGCATTGACCAGCAGTCGACTTCCGGG CGCCGGAGTTGA |